Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:27641028-28081039

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38973 7 27649426 to 27651059 1633 - lncRNA gene predicted gene, 38973
Tssr65321 7 27649897 to 27649902 5 + TSS region transcription start site region 65321
Cpgi18670 7 27653582 to 27654425 843 CpG island CpG island 18670
Tssr65322 7 27653881 to 27653900 19 + TSS region transcription start site region 65322
Tssr65323 7 27653906 to 27653960 54 + TSS region transcription start site region 65323
Ttc9b 7 27653924 to 27656207 2283 + protein coding gene tetratricopeptide repeat domain 9B
Tssr65324 7 27653994 to 27654007 13 + TSS region transcription start site region 65324
Map3k10 7 27656375 to 27674598 18223 - protein coding gene mitogen-activated protein kinase kinase kinase 10
Cpgi18671 7 27657766 to 27658741 975 CpG island CpG island 18671
1500037F05Rik 7 27670932 to 27671782 850 unclassified gene RIKEN cDNA 1500037F05 gene
Cpgi18672 7 27673359 to 27675113 1754 CpG island CpG island 18672
Tssr71429 7 27674516 to 27674630 114 - TSS region transcription start site region 71429
Gm44684 7 27674659 to 27677844 3185 - unclassified non-coding RNA gene predicted gene 44684
Gm45976 7 27678831 to 27690211 11380 - lncRNA gene predicted gene, 45976
Zfp607b 7 27689340 to 27706484 17144 + protein coding gene zinc finger protein 607B
Tssr65325 7 27689529 to 27689572 43 + TSS region transcription start site region 65325
Phf5b-ps 7 27709721 to 27710513 792 + pseudogene PHD finger protein 5B, pseudogene
Cpgi18673 7 27731174 to 27731963 789 CpG island CpG island 18673
Tssr65326 7 27731373 to 27731397 24 + TSS region transcription start site region 65326
Tssr65327 7 27731398 to 27731441 43 + TSS region transcription start site region 65327
Zfp60 7 27731409 to 27751689 20280 + protein coding gene zinc finger protein 60
Tssr65328 7 27731445 to 27731456 11 + TSS region transcription start site region 65328
Tssr65329 7 27731612 to 27731621 9 + TSS region transcription start site region 65329
Tssr65330 7 27749545 to 27749550 5 + TSS region transcription start site region 65330
Tssr71430 7 27761332 to 27761353 21 - TSS region transcription start site region 71430
Tssr65331 7 27765659 to 27765732 73 + TSS region transcription start site region 65331
Gm10046 7 27765673 to 27770972 5299 + pseudogene predicted gene 10046
Cpgi18674 7 27766277 to 27766471 194 CpG island CpG island 18674
Gm29810 7 27784377 to 27795483 11106 + pseudogene predicted gene, 29810
Cpgi18675 7 27804727 to 27805055 328 CpG island CpG island 18675
Tssr65332 7 27804819 to 27804872 53 + TSS region transcription start site region 65332
Tssr65333 7 27804882 to 27804894 12 + TSS region transcription start site region 65333
Zfp626 7 27807196 to 27822916 15720 + protein coding gene zinc finger protein 626
Cpgi18676 7 27838467 to 27838622 155 CpG island CpG island 18676
Tssr65334 7 27838542 to 27838556 14 + TSS region transcription start site region 65334
Tssr65335 7 27838560 to 27838612 52 + TSS region transcription start site region 65335
Zfp59 7 27838607 to 27856438 17831 + protein coding gene zinc finger protein 59
Zfp607a 7 27857527 to 27880825 23298 + protein coding gene zinc finger protein 607A
Tssr65336 7 27860552 to 27860564 12 + TSS region transcription start site region 65336
Tssr65337 7 27860566 to 27860640 74 + TSS region transcription start site region 65337
Cpgi18677 7 27860567 to 27860898 331 CpG island CpG island 18677
Tssr71431 7 27861028 to 27861039 11 - TSS region transcription start site region 71431
Prkcz2 7 27882755 to 27884510 1755 - pseudogene protein kinase C, zeta 2
Cpgi18678 7 27883952 to 27884684 732 CpG island CpG island 18678
Tssr65338 7 27887332 to 27887350 18 + TSS region transcription start site region 65338
Tssr65339 7 27899026 to 27899033 7 + TSS region transcription start site region 65339
Zfp974 7 27907392 to 27929430 22038 - protein coding gene zinc finger protein 974
Tssr71432 7 27912626 to 27912628 2 - TSS region transcription start site region 71432
Gm38720 7 27925378 to 27927382 2004 + lncRNA gene predicted gene, 38720
Gm26891 7 27927549 to 27928474 925 + antisense lncRNA gene predicted gene, 26891
Tssr65340 7 27927592 to 27927597 5 + TSS region transcription start site region 65340
Cpgi18679 7 27929087 to 27929488 401 CpG island CpG island 18679
Tssr71433 7 27929443 to 27929465 22 - TSS region transcription start site region 71433
Tssr71434 7 27929468 to 27929487 19 - TSS region transcription start site region 71434
Gm10651 7 27949155 to 27949763 608 - pseudogene predicted pseudogene 10651
Zfp780b 7 27959800 to 27979157 19357 - protein coding gene zinc finger protein 780B
Tssr71435 7 27970776 to 27970780 4 - TSS region transcription start site region 71435
Cpgi18680 7 27978962 to 27979294 332 CpG island CpG island 18680
Tssr71436 7 27979134 to 27979154 20 - TSS region transcription start site region 71436
Tssr71437 7 27979155 to 27979181 26 - TSS region transcription start site region 71437
Vmn1r-ps87 7 27982861 to 27983813 952 + pseudogene vomeronasal 1 receptor, pseudogene 87
Zfp850 7 27984854 to 28014115 29261 - protein coding gene zinc finger protein 850
Cpgi18681 7 28013689 to 28014355 666 CpG island CpG island 18681
Tssr71438 7 28014123 to 28014183 60 - TSS region transcription start site region 71438
Gm46025 7 28022462 to 28026145 3683 - pseudogene predicted gene, 46025
Psmc4 7 28041702 to 28050092 8390 - protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase, 4
Cpgi18682 7 28049794 to 28050396 602 CpG island CpG island 18682
Tssr71439 7 28050028 to 28050080 52 - TSS region transcription start site region 71439
Gm44744 7 28054732 to 28055837 1105 + lincRNA gene predicted gene 44744
Tssr71440 7 28055163 to 28055168 5 - TSS region transcription start site region 71440
Tssr71441 7 28055200 to 28055209 9 - TSS region transcription start site region 71441
Tssr65341 7 28070945 to 28070949 4 + TSS region transcription start site region 65341
Tssr65342 7 28070998 to 28071029 31 + TSS region transcription start site region 65342
Tssr65343 7 28071198 to 28071213 15 + TSS region transcription start site region 65343
Tssr65344 7 28071215 to 28071228 13 + TSS region transcription start site region 65344
Tssr65345 7 28071230 to 28071242 12 + TSS region transcription start site region 65345
Fcgbp 7 28071236 to 28120862 49626 + protein coding gene Fc fragment of IgG binding protein
Tssr65346 7 28075177 to 28075188 11 + TSS region transcription start site region 65346
Tssr65347 7 28075204 to 28075215 11 + TSS region transcription start site region 65347
Tssr65348 7 28075224 to 28075242 18 + TSS region transcription start site region 65348
Tssr65349 7 28075295 to 28075302 7 + TSS region transcription start site region 65349
Tssr65350 7 28075311 to 28075328 17 + TSS region transcription start site region 65350
Tssr65351 7 28075333 to 28075350 17 + TSS region transcription start site region 65351