Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:19696994-20007022

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apoe 7 19696244 to 19699188 2944 - protein coding gene apolipoprotein E
Cpgi18507 7 19696521 to 19697078 557 CpG island CpG island 18507
Tssr70997 7 19696981 to 19697035 54 - TSS region transcription start site region 70997
Tssr64893 7 19697011 to 19697084 73 + TSS region transcription start site region 64893
Tssr70998 7 19697043 to 19697055 12 - TSS region transcription start site region 70998
Tssr70999 7 19697061 to 19697111 50 - TSS region transcription start site region 70999
Tssr64894 7 19697465 to 19697498 33 + TSS region transcription start site region 64894
Tssr71000 7 19697504 to 19697522 18 - TSS region transcription start site region 71000
Tssr71001 7 19697534 to 19697588 54 - TSS region transcription start site region 71001
Tssr64895 7 19697561 to 19697577 16 + TSS region transcription start site region 64895
Tssr64896 7 19697587 to 19697601 14 + TSS region transcription start site region 64896
Tssr71002 7 19697594 to 19697607 13 - TSS region transcription start site region 71002
Tssr71003 7 19697612 to 19697635 23 - TSS region transcription start site region 71003
Tssr71004 7 19697640 to 19697653 13 - TSS region transcription start site region 71004
Tssr2122 7 19697655 to 19697665 10 - TSS region transcription start site region 2122
Sluc30 7 19697771 to 19697919 148 QTL susceptibility to lung cancer 30
D7Mit57 7 19697771 to 19697919 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 57
Tssr71005 7 19697991 to 19697998 7 - TSS region transcription start site region 71005
Tssr71006 7 19698024 to 19698031 7 - TSS region transcription start site region 71006
Tssr71007 7 19698082 to 19698093 11 - TSS region transcription start site region 71007
Tssr71008 7 19698188 to 19698199 11 - TSS region transcription start site region 71008
Tssr71009 7 19698206 to 19698261 55 - TSS region transcription start site region 71009
Tssr71010 7 19698350 to 19698381 31 - TSS region transcription start site region 71010
Tssr71011 7 19698383 to 19698405 22 - TSS region transcription start site region 71011
Cpgi18508 7 19698399 to 19698801 402 CpG island CpG island 18508
Tssr71012 7 19698419 to 19698435 16 - TSS region transcription start site region 71012
Tssr71013 7 19699045 to 19699063 18 - TSS region transcription start site region 71013
Tssr71014 7 19699594 to 19699607 13 - TSS region transcription start site region 71014
Tssr71015 7 19699719 to 19699737 18 - TSS region transcription start site region 71015
Tssr71016 7 19699955 to 19699961 6 - TSS region transcription start site region 71016
Tssr71017 7 19700404 to 19700434 30 - TSS region transcription start site region 71017
Tssr71018 7 19700445 to 19700458 13 - TSS region transcription start site region 71018
Tssr64897 7 19701309 to 19701329 20 + TSS region transcription start site region 64897
Tomm40 7 19701313 to 19715429 14116 - protein coding gene translocase of outer mitochondrial membrane 40
Tssr71019 7 19710239 to 19710243 4 - TSS region transcription start site region 71019
Tssr71020 7 19713717 to 19713733 16 - TSS region transcription start site region 71020
Cpgi18509 7 19714623 to 19716188 1565 CpG island CpG island 18509
Gm20512 7 19715016 to 19721731 6715 + antisense lncRNA gene predicted gene 20512
Tssr71021 7 19715255 to 19715280 25 - TSS region transcription start site region 71021
Tssr71022 7 19715382 to 19715393 11 - TSS region transcription start site region 71022
Tssr71023 7 19715395 to 19715460 65 - TSS region transcription start site region 71023
Gm38955 7 19715623 to 19720152 4529 + lncRNA gene predicted gene, 38955
Nectin2 7 19716644 to 19749573 32929 - protein coding gene nectin cell adhesion molecule 2
Tssr71024 7 19717492 to 19717511 19 - TSS region transcription start site region 71024
Cpgi18510 7 19732806 to 19733205 399 CpG island CpG island 18510
Tssr71025 7 19733126 to 19733137 11 - TSS region transcription start site region 71025
Tssr71026 7 19733158 to 19733167 9 - TSS region transcription start site region 71026
Tssr71027 7 19733171 to 19733179 8 - TSS region transcription start site region 71027
Cpgi18511 7 19748906 to 19750023 1117 CpG island CpG island 18511
Tssr71028 7 19749464 to 19749542 78 - TSS region transcription start site region 71028
Gm34744 7 19749672 to 19790390 40718 + lncRNA gene predicted gene, 34744
Tssr64898 7 19749904 to 19749941 37 + TSS region transcription start site region 64898
Tssr64899 7 19749954 to 19749968 14 + TSS region transcription start site region 64899
Bcam 7 19756138 to 19770532 14394 - protein coding gene basal cell adhesion molecule
Tssr64900 7 19756202 to 19756237 35 + TSS region transcription start site region 64900
Tssr71029 7 19756784 to 19756804 20 - TSS region transcription start site region 71029
Tssr71030 7 19760085 to 19760111 26 - TSS region transcription start site region 71030
Gm45114 7 19760906 to 19762254 1348 - unclassified gene predicted gene 45114
Tssr71031 7 19764690 to 19764701 11 - TSS region transcription start site region 71031
Cpgi18512 7 19766715 to 19766974 259 CpG island CpG island 18512
Cpgi18513 7 19770359 to 19770871 512 CpG island CpG island 18513
Tssr71032 7 19770485 to 19770504 19 - TSS region transcription start site region 71032
Tssr71033 7 19770509 to 19770526 17 - TSS region transcription start site region 71033
Gm26600 7 19770611 to 19775403 4792 + antisense lncRNA gene predicted gene, 26600
Cblc 7 19779718 to 19796809 17091 - protein coding gene Casitas B-lineage lymphoma c
Cpgi18514 7 19796521 to 19796880 359 CpG island CpG island 18514
Tssr71034 7 19796789 to 19796829 40 - TSS region transcription start site region 71034
Tssr64901 7 19796918 to 19796933 15 + TSS region transcription start site region 64901
Bcl3 7 19808462 to 19822767 14305 - protein coding gene B cell leukemia/lymphoma 3
Cpgi18515 7 19809423 to 19809835 412 CpG island CpG island 18515
Tssr64902 7 19809578 to 19809587 9 + TSS region transcription start site region 64902
Gm16175 7 19809609 to 19811872 2263 + antisense lncRNA gene predicted gene 16175
Cpgi18516 7 19811014 to 19811616 602 CpG island CpG island 18516
Tssr64903 7 19815873 to 19815898 25 + TSS region transcription start site region 64903
Gm16174 7 19816553 to 19818625 2072 + antisense lncRNA gene predicted gene 16174
Tssr64904 7 19816578 to 19816594 16 + TSS region transcription start site region 64904
Tssr64905 7 19816613 to 19816631 18 + TSS region transcription start site region 64905
Cpgi18517 7 19817477 to 19817651 174 CpG island CpG island 18517
Tssr64906 7 19817717 to 19817732 15 + TSS region transcription start site region 64906
Tssr71035 7 19818804 to 19818848 44 - TSS region transcription start site region 71035
Tssr71036 7 19820204 to 19820214 10 - TSS region transcription start site region 71036
Cpgi18518 7 19822168 to 19823004 836 CpG island CpG island 18518
Tssr71037 7 19822698 to 19822776 78 - TSS region transcription start site region 71037
Tssr64907 7 19822897 to 19822916 19 + TSS region transcription start site region 64907
Tssr64908 7 19822928 to 19822943 15 + TSS region transcription start site region 64908
Tssr64909 7 19822958 to 19822967 9 + TSS region transcription start site region 64909
Tssr71038 7 19824248 to 19824259 11 - TSS region transcription start site region 71038
Tssr64910 7 19824480 to 19824498 18 + TSS region transcription start site region 64910
Gm34891 7 19830061 to 19847605 17544 + lncRNA gene predicted gene, 34891
Tssr71039 7 19831871 to 19831900 29 - TSS region transcription start site region 71039
Tssr71040 7 19831940 to 19831958 18 - TSS region transcription start site region 71040
Tssr64911 7 19832056 to 19832108 52 + TSS region transcription start site region 64911
Tssr71041 7 19844548 to 19844552 4 - TSS region transcription start site region 71041
Gm44658 7 19846973 to 19847609 636 + lincRNA gene predicted gene 44658
Tssr64912 7 19851994 to 19852022 28 + TSS region transcription start site region 64912
Gm19345 7 19852003 to 19858350 6347 + protein coding gene predicted gene, 19345
Tssr64913 7 19852024 to 19852045 21 + TSS region transcription start site region 64913
Cpgi18519 7 19852036 to 19852409 373 CpG island CpG island 18519
Tssr64914 7 19852054 to 19852061 7 + TSS region transcription start site region 64914
Ceacam16 7 19852097 to 19861299 9202 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 16
Cpgi18520 7 19853658 to 19853879 221 CpG island CpG island 18520
Cpgi18521 7 19857705 to 19858176 471 CpG island CpG island 18521
Tssr71042 7 19861222 to 19861225 3 - TSS region transcription start site region 71042
Tssr71043 7 19861228 to 19861242 14 - TSS region transcription start site region 71043
Tssr71044 7 19861295 to 19861299 4 - TSS region transcription start site region 71044
Gm44659 7 19868121 to 19871438 3317 - lincRNA gene predicted gene 44659
Tssr71045 7 19871302 to 19871315 13 - TSS region transcription start site region 71045
Tssr71046 7 19871331 to 19871345 14 - TSS region transcription start site region 71046
Tssr71047 7 19871360 to 19871375 15 - TSS region transcription start site region 71047
Tssr71048 7 19871409 to 19871424 15 - TSS region transcription start site region 71048
Ceacam19 7 19875742 to 19887965 12223 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 19
Tssr64915 7 19877159 to 19877161 2 + TSS region transcription start site region 64915
Tssr71049 7 19880284 to 19880327 43 - TSS region transcription start site region 71049
Tssr71050 7 19880428 to 19880440 12 - TSS region transcription start site region 71050
Tssr64916 7 19887341 to 19887350 9 + TSS region transcription start site region 64916
Tssr71051 7 19887908 to 19887945 37 - TSS region transcription start site region 71051
Tssr71052 7 19887946 to 19887962 16 - TSS region transcription start site region 71052
Tssr71053 7 19888067 to 19888091 24 - TSS region transcription start site region 71053
Gm44660 7 19897334 to 19899798 2464 + unclassified gene predicted gene 44660
Pvr 7 19903578 to 19921143 17565 - protein coding gene poliovirus receptor
Tssr71054 7 19904705 to 19904716 11 - TSS region transcription start site region 71054
Tssr71055 7 19906542 to 19906545 3 - TSS region transcription start site region 71055
Tssr64917 7 19911802 to 19911805 3 + TSS region transcription start site region 64917
Gm16184 7 19911843 to 19912406 563 + pseudogene predicted gene 16184
Tssr64918 7 19915501 to 19915504 3 + TSS region transcription start site region 64918
Cpgi18522 7 19920155 to 19921287 1132 CpG island CpG island 18522
Gm16251 7 19920729 to 19927607 6878 + antisense lncRNA gene predicted gene 16251
Tssr71056 7 19921104 to 19921121 17 - TSS region transcription start site region 71056
Tssr71057 7 19921126 to 19921136 10 - TSS region transcription start site region 71057
Tssr71058 7 19921139 to 19921146 7 - TSS region transcription start site region 71058
Cpgi18523 7 19935330 to 19935674 344 CpG island CpG island 18523
Tssr71059 7 19935437 to 19935456 19 - TSS region transcription start site region 71059
Tssr71060 7 19935487 to 19935509 22 - TSS region transcription start site region 71060
Igsf23 7 19937305 to 19950756 13451 - protein coding gene immunoglobulin superfamily, member 23
Tssr64919 7 19939872 to 19939877 5 + TSS region transcription start site region 64919
Tssr71061 7 19940353 to 19940388 35 - TSS region transcription start site region 71061
Tssr64920 7 19940451 to 19940465 14 + TSS region transcription start site region 64920
Tssr64921 7 19946123 to 19946140 17 + TSS region transcription start site region 64921
Gm44651 7 19949201 to 19949572 371 - pseudogene predicted gene 44651
Tssr71062 7 19950729 to 19950748 19 - TSS region transcription start site region 71062
Rpl7a-ps8 7 19953783 to 19954583 800 + pseudogene ribosomal protein L7A, pseudogene 8
Tssr64922 7 19965365 to 19965420 55 + TSS region transcription start site region 64922
Ceacam20 7 19965412 to 19991104 25692 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 20
Tssr64923 7 19965428 to 19965433 5 + TSS region transcription start site region 64923
Tssr64924 7 19965460 to 19965467 7 + TSS region transcription start site region 64924
Tssr64925 7 19965475 to 19965486 11 + TSS region transcription start site region 64925
Tssr64926 7 19965539 to 19965543 4 + TSS region transcription start site region 64926
Tssr2123 7 19989456 to 19989459 3 + TSS region transcription start site region 2123
Nlrp9b 7 19991393 to 20062942 71549 + protein coding gene NLR family, pyrin domain containing 9B