Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:127578585-127838602

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phkg2 7 127573345 to 127583307 9962 + protein coding gene phosphorylase kinase, gamma 2 (testis)
Gm46028 7 127576018 to 127579244 3226 - lncRNA gene predicted gene, 46028
Ccdc189 7 127582383 to 127588595 6212 - protein coding gene coiled-coil domain containing 189
Tssr75011 7 127585171 to 127585208 37 - TSS region transcription start site region 75011
Tssr69262 7 127585313 to 127585326 13 + TSS region transcription start site region 69262
Cpgi19755 7 127587883 to 127589266 1383 CpG island CpG island 19755
Tssr75012 7 127588119 to 127588142 23 - TSS region transcription start site region 75012
Tssr75013 7 127588145 to 127588190 45 - TSS region transcription start site region 75013
Tssr75014 7 127588194 to 127588218 24 - TSS region transcription start site region 75014
Tssr75015 7 127588237 to 127588250 13 - TSS region transcription start site region 75015
Tssr75016 7 127588265 to 127588278 13 - TSS region transcription start site region 75016
Rnf40 7 127588698 to 127603605 14907 + protein coding gene ring finger protein 40
Tssr69263 7 127588714 to 127588725 11 + TSS region transcription start site region 69263
Tssr69264 7 127588739 to 127588791 52 + TSS region transcription start site region 69264
Gm44759 7 127590416 to 127595900 5484 - antisense lncRNA gene predicted gene 44759
Tssr69265 7 127598665 to 127598668 3 + TSS region transcription start site region 69265
Tssr69266 7 127603190 to 127603209 19 + TSS region transcription start site region 69266
1700120K04Rik 7 127603903 to 127604445 542 - antisense lncRNA gene RIKEN cDNA 1700120K04 gene
Tssr75017 7 127604416 to 127604450 34 - TSS region transcription start site region 75017
Tssr75018 7 127604454 to 127604465 11 - TSS region transcription start site region 75018
Zfp629 7 127607031 to 127615785 8754 - protein coding gene zinc finger protein 629
Cpgi19756 7 127611042 to 127612180 1138 CpG island CpG island 19756
Cpgi19757 7 127614211 to 127615688 1477 CpG island CpG island 19757
Tssr75019 7 127615208 to 127615219 11 - TSS region transcription start site region 75019
Tssr75020 7 127615226 to 127615269 43 - TSS region transcription start site region 75020
Cpgi19758 7 127636960 to 127637306 346 CpG island CpG island 19758
Gm39089 7 127647905 to 127651409 3504 - lncRNA gene predicted gene, 39089
Tssr75021 7 127649345 to 127649355 10 - TSS region transcription start site region 75021
Tssr75022 7 127649370 to 127649371 1 - TSS region transcription start site region 75022
Tssr69267 7 127652125 to 127652130 5 + TSS region transcription start site region 69267
Cpgi19759 7 127652159 to 127652430 271 CpG island CpG island 19759
Gm44760 7 127657062 to 127658234 1172 - unclassified gene predicted gene 44760
Bcl7c 7 127661456 to 127708933 47477 - protein coding gene B cell CLL/lymphoma 7C
Tssr75023 7 127686826 to 127686840 14 - TSS region transcription start site region 75023
Tssr69268 7 127691658 to 127691668 10 + TSS region transcription start site region 69268
Tssr69269 7 127691924 to 127691984 60 + TSS region transcription start site region 69269
Gm39090 7 127691935 to 127700793 8858 + lincRNA gene predicted gene, 39090
Cpgi19760 7 127707903 to 127709217 1314 CpG island CpG island 19760
Tssr75024 7 127708050 to 127708084 34 - TSS region transcription start site region 75024
Tssr75025 7 127708098 to 127708118 20 - TSS region transcription start site region 75025
Mir762 7 127708487 to 127708562 75 + miRNA gene microRNA 762
Tssr75026 7 127708585 to 127708602 17 - TSS region transcription start site region 75026
Tssr75027 7 127708620 to 127708665 45 - TSS region transcription start site region 75027
Tssr75028 7 127708680 to 127708706 26 - TSS region transcription start site region 75028
Tssr75029 7 127708738 to 127708791 53 - TSS region transcription start site region 75029
Tssr75030 7 127708849 to 127708877 28 - TSS region transcription start site region 75030
Tssr75031 7 127708886 to 127708918 32 - TSS region transcription start site region 75031
Tssr69270 7 127712709 to 127712745 36 + TSS region transcription start site region 69270
Ctf1 7 127712736 to 127718192 5456 + protein coding gene cardiotrophin 1
Cpgi19761 7 127713063 to 127713272 209 CpG island CpG island 19761
Cpgi19762 7 127716916 to 127717594 678 CpG island CpG island 19762
Ctf2 7 127718960 to 127725616 6656 - protein coding gene cardiotrophin 2
D7Ertd481e 7 127724318 to 127724527 209 DNA segment DNA segment, Chr 7, ERATO Doi 481, expressed
Tssr2408 7 127730912 to 127730914 2 + TSS region transcription start site region 2408
Tssr69271 7 127744299 to 127744321 22 + TSS region transcription start site region 69271
Fbxl19 7 127744543 to 127769483 24940 + protein coding gene F-box and leucine-rich repeat protein 19
Cpgi19763 7 127744962 to 127746348 1386 CpG island CpG island 19763
Tssr69272 7 127745532 to 127745544 12 + TSS region transcription start site region 69272
Tssr69273 7 127745785 to 127745824 39 + TSS region transcription start site region 69273
Tssr75032 7 127746070 to 127746095 25 - TSS region transcription start site region 75032
Tssr69274 7 127746254 to 127746321 67 + TSS region transcription start site region 69274
Cpgi19764 7 127746531 to 127747498 967 CpG island CpG island 19764
Tssr69275 7 127746533 to 127746565 32 + TSS region transcription start site region 69275
Tssr69276 7 127746566 to 127746581 15 + TSS region transcription start site region 69276
Tssr69277 7 127746714 to 127746729 15 + TSS region transcription start site region 69277
Tssr69278 7 127746737 to 127746747 10 + TSS region transcription start site region 69278
Tssr69279 7 127748108 to 127748120 12 + TSS region transcription start site region 69279
Tssr69280 7 127748137 to 127748155 18 + TSS region transcription start site region 69280
Tssr69281 7 127748167 to 127748177 10 + TSS region transcription start site region 69281
Tssr69282 7 127767447 to 127767468 21 + TSS region transcription start site region 69282
Cpgi19765 7 127767461 to 127767863 402 CpG island CpG island 19765
Tssr69283 7 127767473 to 127767486 13 + TSS region transcription start site region 69283
Tssr69284 7 127767504 to 127767517 13 + TSS region transcription start site region 69284
Cpgi19766 7 127769718 to 127770243 525 CpG island CpG island 19766
Tssr75033 7 127769750 to 127769763 13 - TSS region transcription start site region 75033
Tssr69285 7 127769809 to 127769854 45 + TSS region transcription start site region 69285
Orai3 7 127769815 to 127775150 5335 + protein coding gene ORAI calcium release-activated calcium modulator 3
Tssr69286 7 127769858 to 127769863 5 + TSS region transcription start site region 69286
Tssr69287 7 127769944 to 127769971 27 + TSS region transcription start site region 69287
Cpgi19767 7 127776447 to 127778326 1879 CpG island CpG island 19767
Setd1a 7 127776670 to 127800122 23452 + protein coding gene SET domain containing 1A
Tssr69288 7 127777095 to 127777152 57 + TSS region transcription start site region 69288
Tssr69289 7 127777315 to 127777367 52 + TSS region transcription start site region 69289
Tssr69290 7 127777376 to 127777413 37 + TSS region transcription start site region 69290
Tssr75034 7 127777734 to 127777770 36 - TSS region transcription start site region 75034
Tssr69291 7 127784029 to 127784050 21 + TSS region transcription start site region 69291
Gm49388 7 127785608 to 127803802 18194 + protein coding gene predicted gene, 49388
Cpgi19768 7 127799050 to 127799281 231 CpG island CpG island 19768
9430064I24Rik 7 127800094 to 127802762 2668 - unclassified gene RIKEN cDNA 9430064I24 gene
Hsd3b7 7 127800604 to 127803802 3198 + protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
Tssr69292 7 127800608 to 127800615 7 + TSS region transcription start site region 69292
Tssr69293 7 127800623 to 127800696 73 + TSS region transcription start site region 69293
Tssr69294 7 127800711 to 127800719 8 + TSS region transcription start site region 69294
Tssr69295 7 127800844 to 127800849 5 + TSS region transcription start site region 69295
Cpgi19769 7 127802415 to 127802604 189 CpG island CpG island 19769
Stx1b 7 127803900 to 127824531 20631 - protein coding gene syntaxin 1B
Tssr75035 7 127806626 to 127806637 11 - TSS region transcription start site region 75035
Tssr75036 7 127806959 to 127806992 33 - TSS region transcription start site region 75036
Tssr75037 7 127807017 to 127807034 17 - TSS region transcription start site region 75037
Tssr75038 7 127807245 to 127807268 23 - TSS region transcription start site region 75038
Tssr75039 7 127807299 to 127807330 31 - TSS region transcription start site region 75039
Tssr75040 7 127810934 to 127810951 17 - TSS region transcription start site region 75040
Gm45204 7 127812154 to 127813507 1353 - unclassified gene predicted gene 45204
Cpgi19770 7 127824219 to 127824716 497 CpG island CpG island 19770
Tssr75041 7 127824469 to 127824580 111 - TSS region transcription start site region 75041
Tssr75042 7 127824765 to 127824777 12 - TSS region transcription start site region 75042
Tssr75043 7 127824836 to 127824849 13 - TSS region transcription start site region 75043