Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:125312030-125772177

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tsiq1 7 119885996 to 125542177 5656181 QTL T cell secretion of IL4 QTL 1
Gm46000 7 125316661 to 125323685 7024 - lncRNA gene predicted gene, 46000
Tssr68965 7 125318334 to 125318343 9 + TSS region transcription start site region 68965
4930533L02Rik 7 125318359 to 125319518 1159 + unclassified non-coding RNA gene RIKEN cDNA 4930533L02 gene
4933440M02Rik 7 125331782 to 125349786 18004 - lincRNA gene RIKEN cDNA 4933440M02 gene
Gm39085 7 125333122 to 125333681 559 + lncRNA gene predicted gene, 39085
D7Mit68 7 125341551 to 125341734 183 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 68
Tssr74592 7 125349745 to 125349783 38 - TSS region transcription start site region 74592
Tssr74593 7 125349784 to 125349814 30 - TSS region transcription start site region 74593
Tssr68966 7 125349863 to 125349877 14 + TSS region transcription start site region 68966
4930571K23Rik 7 125368861 to 125371013 2152 + lincRNA gene RIKEN cDNA 4930571K23 gene
Tssr68967 7 125368950 to 125368961 11 + TSS region transcription start site region 68967
Tssr68968 7 125368972 to 125368983 11 + TSS region transcription start site region 68968
Tssr68969 7 125368986 to 125369003 17 + TSS region transcription start site region 68969
Cpgi19679 7 125393328 to 125394029 701 CpG island CpG island 19679
Gm30560 7 125397981 to 125405814 7833 + lncRNA gene predicted gene, 30560
Gm30717 7 125416994 to 125418114 1120 - lincRNA gene predicted gene, 30717
Tssr68970 7 125418700 to 125418726 26 + TSS region transcription start site region 68970
Cpgi19680 7 125444527 to 125445349 822 CpG island CpG island 19680
Tssr68971 7 125444635 to 125444709 74 + TSS region transcription start site region 68971
Kdm8 7 125444676 to 125462269 17593 + protein coding gene lysine (K)-specific demethylase 8
Nsmce1 7 125467640 to 125491575 23935 - protein coding gene NSE1 homolog, SMC5-SMC6 complex component
Tssr68972 7 125487410 to 125487425 15 + TSS region transcription start site region 68972
Tssr68973 7 125487660 to 125487665 5 + TSS region transcription start site region 68973
Tssr74594 7 125488742 to 125488753 11 - TSS region transcription start site region 74594
Tssr68974 7 125489005 to 125489010 5 + TSS region transcription start site region 68974
Cpgi19681 7 125491068 to 125491961 893 CpG island CpG island 19681
Tssr68975 7 125491112 to 125491130 18 + TSS region transcription start site region 68975
Tssr74595 7 125491371 to 125491383 12 - TSS region transcription start site region 74595
Tssr74596 7 125491397 to 125491413 16 - TSS region transcription start site region 74596
Tssr74597 7 125491414 to 125491458 44 - TSS region transcription start site region 74597
Tssr74598 7 125491475 to 125491486 11 - TSS region transcription start site region 74598
Tssr74599 7 125491506 to 125491520 14 - TSS region transcription start site region 74599
Tssr74600 7 125491524 to 125491539 15 - TSS region transcription start site region 74600
Tssr68976 7 125491528 to 125491565 37 + TSS region transcription start site region 68976
4921524M04Rik 7 125491554 to 125493057 1503 unclassified gene RIKEN cDNA 4921524M04 gene
Tssr74601 7 125491586 to 125491595 9 - TSS region transcription start site region 74601
Tssr74602 7 125492400 to 125492406 6 - TSS region transcription start site region 74602
Tssr74603 7 125492543 to 125492590 47 - TSS region transcription start site region 74603
D7Ertd495e 7 125497236 to 125497460 224 DNA segment DNA segment, Chr 7, ERATO Doi 495, expressed
D7Mit206 7 125542030 to 125542177 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 206
Gm4973 7 125547269 to 125548599 1330 + pseudogene predicted gene 4973
Tssr68977 7 125548371 to 125548398 27 + TSS region transcription start site region 68977
A430106F20Rik 7 125551772 to 125552062 290 unclassified gene RIKEN cDNA A430106F20 gene
Cpgi19682 7 125552009 to 125552544 535 CpG island CpG island 19682
Tssr74604 7 125552055 to 125552065 10 - TSS region transcription start site region 74604
Tssr74605 7 125552133 to 125552176 43 - TSS region transcription start site region 74605
Tssr68978 7 125552235 to 125552257 22 + TSS region transcription start site region 68978
Tssr68979 7 125552260 to 125552306 46 + TSS region transcription start site region 68979
Il4ra 7 125552282 to 125579474 27192 + protein coding gene interleukin 4 receptor, alpha
Tssr68980 7 125552308 to 125552311 3 + TSS region transcription start site region 68980
Tssr68981 7 125552313 to 125552323 10 + TSS region transcription start site region 68981
Gm44876 7 125570776 to 125572117 1341 - antisense lncRNA gene predicted gene 44876
Cpgi19683 7 125581057 to 125581608 551 CpG island CpG island 19683
Tssr68982 7 125581428 to 125581450 22 + TSS region transcription start site region 68982
Tssr68983 7 125594134 to 125594147 13 + TSS region transcription start site region 68983
Tssr68984 7 125603420 to 125603437 17 + TSS region transcription start site region 68984
Il21r 7 125603429 to 125633570 30141 + protein coding gene interleukin 21 receptor
Tssr68985 7 125603443 to 125603474 31 + TSS region transcription start site region 68985
Tssr68986 7 125603481 to 125603496 15 + TSS region transcription start site region 68986
Tssr68987 7 125603587 to 125603600 13 + TSS region transcription start site region 68987
Tssr68988 7 125603616 to 125603625 9 + TSS region transcription start site region 68988
Tssr68989 7 125603640 to 125603651 11 + TSS region transcription start site region 68989
Tssr74606 7 125605809 to 125605835 26 - TSS region transcription start site region 74606
Tssr68990 7 125607626 to 125607669 43 + TSS region transcription start site region 68990
Tssr68991 7 125630613 to 125630627 14 + TSS region transcription start site region 68991
Tssr68992 7 125630646 to 125630660 14 + TSS region transcription start site region 68992
D7Mit101 7 125633039 to 125633127 88 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 101
Tssr68993 7 125634396 to 125634410 14 + TSS region transcription start site region 68993
Tssr74607 7 125636519 to 125636523 4 - TSS region transcription start site region 74607
Gtf3c1 7 125640954 to 125707688 66734 - protein coding gene general transcription factor III C 1
Cpgi19684 7 125707031 to 125708339 1308 CpG island CpG island 19684
Tssr74608 7 125707679 to 125707718 39 - TSS region transcription start site region 74608
Tssr74609 7 125707735 to 125707747 12 - TSS region transcription start site region 74609
Tssr74610 7 125707771 to 125707785 14 - TSS region transcription start site region 74610
D430042O09Rik 7 125707888 to 125874793 166905 + protein coding gene RIKEN cDNA D430042O09 gene
Tssr68994 7 125707893 to 125707929 36 + TSS region transcription start site region 68994
Tssr68995 7 125707945 to 125707958 13 + TSS region transcription start site region 68995
A930012M21Rik 7 125710836 to 125713308 2472 unclassified gene RIKEN cDNA A930012M21 gene
D7Mit286 7 125719677 to 125719847 170 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 286
D7Ertd523e 7 125735725 to 125735974 249 DNA segment DNA segment, Chr 7, ERATO Doi 523, expressed
Tssr68996 7 125753728 to 125753738 10 + TSS region transcription start site region 68996