Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:123151281-125141409

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45846 7 123031374 to 123169678 138304 + lincRNA gene predicted gene 45846
Tnrc6a 7 123123885 to 123195296 71411 + protein coding gene trinucleotide repeat containing 6a
Tssr68937 7 123158674 to 123158676 2 + TSS region transcription start site region 68937
Tssr68938 7 123214776 to 123214793 17 + TSS region transcription start site region 68938
Slc5a11 7 123214780 to 123273253 58473 + protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 11
Tssr68939 7 123214808 to 123214853 45 + TSS region transcription start site region 68939
Tssr68940 7 123214860 to 123214886 26 + TSS region transcription start site region 68940
Tssr68941 7 123228879 to 123228885 6 + TSS region transcription start site region 68941
Arhgap17 7 123279218 to 123369915 90697 - protein coding gene Rho GTPase activating protein 17
Tssr74576 7 123286683 to 123286727 44 - TSS region transcription start site region 74576
Tssr74577 7 123286894 to 123286911 17 - TSS region transcription start site region 74577
Tssr74578 7 123286967 to 123287018 51 - TSS region transcription start site region 74578
D7Ertd388e 7 123290296 to 123290503 207 DNA segment DNA segment, Chr 7, ERATO Doi 388, expressed
Tssr74579 7 123294519 to 123294539 20 - TSS region transcription start site region 74579
Tssr74580 7 123300515 to 123300523 8 - TSS region transcription start site region 74580
Tssr74581 7 123312476 to 123312500 24 - TSS region transcription start site region 74581
Tssr74582 7 123329469 to 123329495 26 - TSS region transcription start site region 74582
Tssr74583 7 123358545 to 123358569 24 - TSS region transcription start site region 74583
Tssr74584 7 123359013 to 123359018 5 - TSS region transcription start site region 74584
Cpgi19675 7 123369256 to 123370688 1432 CpG island CpG island 19675
Tssr68942 7 123369745 to 123369750 5 + TSS region transcription start site region 68942
Tssr68943 7 123369764 to 123369769 5 + TSS region transcription start site region 68943
Tssr68944 7 123369781 to 123369802 21 + TSS region transcription start site region 68944
Tssr74585 7 123369842 to 123369867 25 - TSS region transcription start site region 74585
Tssr74586 7 123369870 to 123369920 50 - TSS region transcription start site region 74586
Tssr68945 7 123370302 to 123370321 19 + TSS region transcription start site region 68945
Cpgi19676 7 123377842 to 123378446 604 CpG island CpG island 19676
Lcmt1 7 123377982 to 123430358 52376 + protein coding gene leucine carboxyl methyltransferase 1
Tssr68946 7 123378005 to 123378086 81 + TSS region transcription start site region 68946
Gm23559 7 123382669 to 123382771 102 - snRNA gene predicted gene, 23559
Tssr68947 7 123418206 to 123418228 22 + TSS region transcription start site region 68947
Tssr68948 7 123418234 to 123418250 16 + TSS region transcription start site region 68948
Tssr68949 7 123418255 to 123418276 21 + TSS region transcription start site region 68949
Tssr68950 7 123418281 to 123418291 10 + TSS region transcription start site region 68950
Tssr68951 7 123421510 to 123421521 11 + TSS region transcription start site region 68951
Tssr68952 7 123422369 to 123422374 5 + TSS region transcription start site region 68952
D7Mit164 7 123435509 to 123435813 304 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 164
D7Mit41 7 123436140 to 123436252 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 41
Tssr68953 7 123462274 to 123462296 22 + TSS region transcription start site region 68953
Aqp8 7 123462294 to 123468003 5709 + protein coding gene aquaporin 8
Tssr68954 7 123462318 to 123462329 11 + TSS region transcription start site region 68954
Tssr68955 7 123462350 to 123462368 18 + TSS region transcription start site region 68955
Zkscan2 7 123475384 to 123500449 25065 - protein coding gene zinc finger with KRAB and SCAN domains 2
Cpgi19677 7 123499978 to 123501091 1113 CpG island CpG island 19677
Tssr74587 7 123500100 to 123500115 15 - TSS region transcription start site region 74587
Tssr74588 7 123500503 to 123500578 75 - TSS region transcription start site region 74588
Tssr2393 7 123543491 to 123543495 4 + TSS region transcription start site region 2393
Gm30335 7 123592022 to 123639762 47740 + lncRNA gene predicted gene, 30335
Tssr68956 7 123819945 to 123819947 2 + TSS region transcription start site region 68956
Gm23788 7 123942104 to 123942209 105 - snRNA gene predicted gene, 23788
Gm26974 7 123958955 to 123968767 9812 - unclassified non-coding RNA gene predicted gene, 26974
Gm27040 7 123971046 to 123983454 12408 - antisense lncRNA gene predicted gene, 27040
Cpgi19678 7 123982039 to 123984126 2087 CpG island CpG island 19678
Tssr68957 7 123982799 to 123982863 64 + TSS region transcription start site region 68957
Hs3st4 7 123983181 to 124398989 415808 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 4
Tssr68958 7 123993256 to 123993271 15 + TSS region transcription start site region 68958
Tssr68959 7 123993334 to 123993348 14 + TSS region transcription start site region 68959
Tssr68960 7 124018148 to 124018154 6 + TSS region transcription start site region 68960
D7Mit102 7 124037402 to 124037658 256 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 102
Tssr68961 7 124089411 to 124089417 6 + TSS region transcription start site region 68961
Tssr68962 7 124140521 to 124140525 4 + TSS region transcription start site region 68962
Gm25759 7 124146281 to 124146409 128 + snoRNA gene predicted gene, 25759
Tssr74589 7 124186593 to 124186605 12 - TSS region transcription start site region 74589
Gm15338 7 124186718 to 124290270 103552 + sense intronic lncRNA gene predicted gene 15338
Tssr68963 7 124186733 to 124186739 6 + TSS region transcription start site region 68963
Gm15339 7 124476541 to 124494301 17760 - lincRNA gene predicted gene 15339
Gm23168 7 124492906 to 124493048 142 + snoRNA gene predicted gene, 23168
3100003L05Rik 7 124625670 to 124708935 83265 - lincRNA gene RIKEN cDNA 3100003L05 gene
Tssr74590 7 124629121 to 124629125 4 - TSS region transcription start site region 74590
Tssr74591 7 124655285 to 124655322 37 - TSS region transcription start site region 74591
Gm19008 7 124699384 to 124700075 691 - pseudogene predicted gene, 19008
D7Csu1 7 124764585 to 124764980 395 DNA segment DNA segment, Chr 7, Central Connecticut State University 1
D7Csu2 7 124764961 to 124765251 290 DNA segment DNA segment, Chr 7, Central Connecticut State University 2
Gm45092 7 124907609 to 124914418 6809 + lincRNA gene predicted gene 45092
D7Mit255 7 124914439 to 124914573 134 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 255
Il4ppq 7 124914439 to 129217600 4303161 QTL IL-4 producing potential QTL
Gm45093 7 125067029 to 125069491 2462 - unclassified gene predicted gene 45093
Glud-ps 7 125075351 to 125076007 656 + pseudogene glutamate dehydrogenase, pseudogene
D7Mit205 7 125127452 to 125127570 118 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 205