Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:122734842-124004867

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacng3 7 122671744 to 122769393 97649 + protein coding gene calcium channel, voltage-dependent, gamma subunit 3
D7Mit331 7 122736370 to 122736519 149 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 331
Asrq7a 7 122750785 to 122750785 0 QTL acoustic startle response 7a
D7Mit358 7 122753625 to 122753716 91 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 358
Tssr68913 7 122821598 to 122821637 39 + TSS region transcription start site region 68913
Gm29759 7 122837963 to 122838289 326 + pseudogene predicted gene, 29759
Gm39082 7 122924515 to 122935787 11272 + lncRNA gene predicted gene, 39082
Gm39083 7 122935836 to 122940358 4522 + lncRNA gene predicted gene, 39083
Tssr74575 7 122955674 to 122955699 25 - TSS region transcription start site region 74575
Tssr68914 7 122965636 to 122965647 11 + TSS region transcription start site region 68914
4930413G21Rik 7 122969058 to 122970050 992 - lncRNA gene RIKEN cDNA 4930413G21 gene
Cpgi19671 7 122969364 to 122970825 1461 CpG island CpG island 19671
Tssr68915 7 122969847 to 122969858 11 + TSS region transcription start site region 68915
Tssr68916 7 122969874 to 122969885 11 + TSS region transcription start site region 68916
Tssr68917 7 122969887 to 122969907 20 + TSS region transcription start site region 68917
Tssr68918 7 122969911 to 122969966 55 + TSS region transcription start site region 68918
Rbbp6 7 122970564 to 123002572 32008 + protein coding gene retinoblastoma binding protein 6, ubiquitin ligase
Gm20274 7 122995348 to 122995931 583 + sense intronic lncRNA gene predicted gene, 20274
Tssr68919 7 122999767 to 122999781 14 + TSS region transcription start site region 68919
Tssr68920 7 122999837 to 122999858 21 + TSS region transcription start site region 68920
Tssr68921 7 123001589 to 123001618 29 + TSS region transcription start site region 68921
Tssr68922 7 123001634 to 123001651 17 + TSS region transcription start site region 68922
Tssr68923 7 123001656 to 123001678 22 + TSS region transcription start site region 68923
Tssr68924 7 123001792 to 123001808 16 + TSS region transcription start site region 68924
Tssr68925 7 123001872 to 123001930 58 + TSS region transcription start site region 68925
Tssr68926 7 123003643 to 123003650 7 + TSS region transcription start site region 68926
Tssr68927 7 123010090 to 123010107 17 + TSS region transcription start site region 68927
Gm6905 7 123010112 to 123010622 510 + pseudogene predicted gene 6905
Cpgi19672 7 123030751 to 123031012 261 CpG island CpG island 19672
Tssr68928 7 123031264 to 123031284 20 + TSS region transcription start site region 68928
Tssr68929 7 123031346 to 123031392 46 + TSS region transcription start site region 68929
Gm45846 7 123031374 to 123169678 138304 + lincRNA gene predicted gene 45846
Gm45847 7 123031415 to 123068305 36890 + lincRNA gene predicted gene 45847
Tssr68930 7 123057135 to 123057139 4 + TSS region transcription start site region 68930
Gm39084 7 123075587 to 123100717 25130 - lncRNA gene predicted gene, 39084
Cpgi19673 7 123084600 to 123084894 294 CpG island CpG island 19673
Cpgi19674 7 123123744 to 123124920 1176 CpG island CpG island 19674
Tssr68931 7 123123870 to 123123901 31 + TSS region transcription start site region 68931
Tnrc6a 7 123123885 to 123195296 71411 + protein coding gene trinucleotide repeat containing 6a
Tssr68932 7 123124142 to 123124171 29 + TSS region transcription start site region 68932
Tssr68933 7 123124172 to 123124223 51 + TSS region transcription start site region 68933
Tssr68934 7 123124266 to 123124277 11 + TSS region transcription start site region 68934
Tssr68935 7 123124640 to 123124681 41 + TSS region transcription start site region 68935
Tssr68936 7 123143747 to 123143760 13 + TSS region transcription start site region 68936
Tssr68937 7 123158674 to 123158676 2 + TSS region transcription start site region 68937
Tssr68938 7 123214776 to 123214793 17 + TSS region transcription start site region 68938
Slc5a11 7 123214780 to 123273253 58473 + protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 11
Tssr68939 7 123214808 to 123214853 45 + TSS region transcription start site region 68939
Tssr68940 7 123214860 to 123214886 26 + TSS region transcription start site region 68940
Tssr68941 7 123228879 to 123228885 6 + TSS region transcription start site region 68941
Arhgap17 7 123279218 to 123369915 90697 - protein coding gene Rho GTPase activating protein 17
Tssr74576 7 123286683 to 123286727 44 - TSS region transcription start site region 74576
Tssr74577 7 123286894 to 123286911 17 - TSS region transcription start site region 74577
Tssr74578 7 123286967 to 123287018 51 - TSS region transcription start site region 74578
D7Ertd388e 7 123290296 to 123290503 207 DNA segment DNA segment, Chr 7, ERATO Doi 388, expressed
Tssr74579 7 123294519 to 123294539 20 - TSS region transcription start site region 74579
Tssr74580 7 123300515 to 123300523 8 - TSS region transcription start site region 74580
Tssr74581 7 123312476 to 123312500 24 - TSS region transcription start site region 74581
Tssr74582 7 123329469 to 123329495 26 - TSS region transcription start site region 74582
Tssr74583 7 123358545 to 123358569 24 - TSS region transcription start site region 74583
Tssr74584 7 123359013 to 123359018 5 - TSS region transcription start site region 74584
Cpgi19675 7 123369256 to 123370688 1432 CpG island CpG island 19675
Tssr68942 7 123369745 to 123369750 5 + TSS region transcription start site region 68942
Tssr68943 7 123369764 to 123369769 5 + TSS region transcription start site region 68943
Tssr68944 7 123369781 to 123369802 21 + TSS region transcription start site region 68944
Tssr74585 7 123369842 to 123369867 25 - TSS region transcription start site region 74585
Tssr74586 7 123369870 to 123369920 50 - TSS region transcription start site region 74586
Tssr68945 7 123370302 to 123370321 19 + TSS region transcription start site region 68945
Cpgi19676 7 123377842 to 123378446 604 CpG island CpG island 19676
Lcmt1 7 123377982 to 123430358 52376 + protein coding gene leucine carboxyl methyltransferase 1
Tssr68946 7 123378005 to 123378086 81 + TSS region transcription start site region 68946
Gm23559 7 123382669 to 123382771 102 - snRNA gene predicted gene, 23559
Tssr68947 7 123418206 to 123418228 22 + TSS region transcription start site region 68947
Tssr68948 7 123418234 to 123418250 16 + TSS region transcription start site region 68948
Tssr68949 7 123418255 to 123418276 21 + TSS region transcription start site region 68949
Tssr68950 7 123418281 to 123418291 10 + TSS region transcription start site region 68950
Tssr68951 7 123421510 to 123421521 11 + TSS region transcription start site region 68951
Tssr68952 7 123422369 to 123422374 5 + TSS region transcription start site region 68952
D7Mit164 7 123435509 to 123435813 304 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 164
D7Mit41 7 123436140 to 123436252 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 41
Tssr68953 7 123462274 to 123462296 22 + TSS region transcription start site region 68953
Aqp8 7 123462294 to 123468003 5709 + protein coding gene aquaporin 8
Tssr68954 7 123462318 to 123462329 11 + TSS region transcription start site region 68954
Tssr68955 7 123462350 to 123462368 18 + TSS region transcription start site region 68955
Zkscan2 7 123475384 to 123500449 25065 - protein coding gene zinc finger with KRAB and SCAN domains 2
Cpgi19677 7 123499978 to 123501091 1113 CpG island CpG island 19677
Tssr74587 7 123500100 to 123500115 15 - TSS region transcription start site region 74587
Tssr74588 7 123500503 to 123500578 75 - TSS region transcription start site region 74588
Tssr2393 7 123543491 to 123543495 4 + TSS region transcription start site region 2393
Gm30335 7 123592022 to 123639762 47740 + lncRNA gene predicted gene, 30335
Tssr68956 7 123819945 to 123819947 2 + TSS region transcription start site region 68956
Gm23788 7 123942104 to 123942209 105 - snRNA gene predicted gene, 23788
Gm26974 7 123958955 to 123968767 9812 - unclassified non-coding RNA gene predicted gene, 26974
Gm27040 7 123971046 to 123983454 12408 - antisense lncRNA gene predicted gene, 27040
Cpgi19678 7 123982039 to 123984126 2087 CpG island CpG island 19678
Tssr68957 7 123982799 to 123982863 64 + TSS region transcription start site region 68957
Hs3st4 7 123983181 to 124398989 415808 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 4
Tssr68958 7 123993256 to 123993271 15 + TSS region transcription start site region 68958
Tssr68959 7 123993334 to 123993348 14 + TSS region transcription start site region 68959