Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:11366624-12840427

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45596 7 11367374 to 11367807 433 + pseudogene predicted gene 45596
Gm45598 7 11380620 to 11387584 6964 - pseudogene predicted gene 45598
Gm18123 7 11393304 to 11394125 821 - pseudogene predicted gene, 18123
Zscan4f 7 11397915 to 11402318 4403 + protein coding gene zinc finger and SCAN domain containing 4F
Gm18639 7 11415356 to 11416608 1252 + pseudogene predicted gene, 18639
Gm9604 7 11443992 to 11444424 432 + pseudogene predicted gene 9604
Gm7839 7 11449014 to 11449686 672 + pseudogene predicted gene 7839
Gm45382 7 11454894 to 11455044 150 - pseudogene predicted gene 45382
Gm7207 7 11460899 to 11468583 7684 - pseudogene predicted gene 7207
Gm45550 7 11473372 to 11474317 945 - pseudogene predicted gene 45550
Gm45551 7 11478208 to 11479567 1359 + pseudogene predicted gene 45551
Gm45549 7 11497020 to 11503996 6976 - pseudogene predicted gene 45549
Gm18124 7 11509861 to 11510566 705 - pseudogene predicted gene, 18124
Tssr64469 7 11514286 to 11514287 1 + TSS region transcription start site region 64469
Zscan4-ps2 7 11514287 to 11518688 4401 + pseudogene zinc finger and SCAN domain containing 4, pseudogene 2
Gm18640 7 11531730 to 11532982 1252 + pseudogene predicted gene, 18640
Gm3816 7 11560389 to 11560821 432 + pseudogene predicted gene 3816
Gm7848 7 11565417 to 11566134 717 + pseudogene predicted gene 7848
Gm7210 7 11586438 to 11593164 6726 - pseudogene predicted gene 7210
Gm45500 7 11599236 to 11600038 802 - pseudogene predicted gene 45500
Zscan4-ps3 7 11609308 to 11614112 4804 + pseudogene zinc finger and SCAN domain containing 4, pseudogene 3
Gm18641 7 11625035 to 11625914 879 + pseudogene predicted gene, 18641
Vmn1r-ps53 7 11653129 to 11654032 903 - pseudogene vomeronasal 1 receptor, pseudogene 53
Gm45283 7 11660820 to 11661447 627 + pseudogene predicted gene 45283
Vmn1r72 7 11669599 to 11679317 9718 - protein coding gene vomeronasal 1 receptor 72
Gm18850 7 11687829 to 11688216 387 - pseudogene predicted gene, 18850
Gm19093 7 11716716 to 11720271 3555 + pseudogene predicted gene, 19093
Vmn1r73 7 11756257 to 11757168 911 + protein coding gene vomeronasal 1 receptor 73
Gm45616 7 11773668 to 11773986 318 - pseudogene predicted gene 45616
Gm45617 7 11774006 to 11774214 208 + pseudogene predicted gene 45617
Vmn1r-ps54 7 11782123 to 11782262 139 + pseudogene vomeronasal 1 receptor, pseudogene 54
Gm6929 7 11845253 to 11845720 467 - pseudogene predicted gene 6929
Vmn1r74 7 11846775 to 11847689 914 + protein coding gene vomeronasal 1 receptor 74
Vmn1r-ps55 7 11853957 to 11854348 391 + pseudogene vomeronasal 1 receptor, pseudogene 55
Gm34779 7 11866593 to 11866855 262 + pseudogene predicted gene, 34779
D7Mit143 7 11867622 to 11867771 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 143
Vmn1r75 7 11880343 to 11881260 917 + protein coding gene vomeronasal 1 receptor 75
Gm18851 7 11890723 to 11900499 9776 - pseudogene predicted gene, 18851
Tssr64470 7 11899932 to 11899937 5 + TSS region transcription start site region 64470
Vmn1r-ps56 7 11911246 to 11912210 964 - pseudogene vomeronasal 1 receptor, pseudogene 56
Tpt1-ps4 7 11915871 to 11916492 621 + pseudogene tumor protein, translationally-controlled, pseudogene 4
Vmn1r76 7 11930311 to 11931285 974 - protein coding gene vomeronasal 1 receptor 76
Gm45387 7 11952422 to 11953403 981 - pseudogene predicted gene 45387
Vmn1r-ps57 7 11965562 to 11965849 287 - pseudogene vomeronasal 1 receptor, pseudogene 57
Gm24414 7 11967150 to 11967256 106 - snRNA gene predicted gene, 24414
Gm3836 7 11970947 to 11972933 1986 + pseudogene predicted gene 3836
Vmn1r-ps58 7 11976950 to 11977789 839 - pseudogene vomeronasal 1 receptor, pseudogene 58
Gm17737 7 11979676 to 11983912 4236 - pseudogene predicted gene, 17737
Tssr70619 7 11988544 to 11988555 11 - TSS region transcription start site region 70619
Tssr70620 7 11988557 to 11988582 25 - TSS region transcription start site region 70620
Cpgi18312 7 11988914 to 11989322 408 CpG island CpG island 18312
Gm45429 7 11991230 to 11991401 171 + pseudogene predicted gene 45429
Vmn1r-ps59 7 11994916 to 11995080 164 + pseudogene vomeronasal 1 receptor, pseudogene 59
Gm18597 7 11996063 to 11996756 693 - pseudogene predicted gene, 18597
Gm17850 7 11997725 to 11999663 1938 - pseudogene predicted gene, 17850
Vmn1r-ps60 7 12005032 to 12005681 649 + pseudogene vomeronasal 1 receptor, pseudogene 60
Gm18854 7 12025451 to 12030404 4953 + pseudogene predicted gene, 18854
Vmn1r77 7 12036846 to 12042219 5373 + protein coding gene vomeronasal 1 receptor 77
Gm10179 7 12085925 to 12086612 687 - pseudogene predicted gene 10179
Vmn1r-ps61 7 12091277 to 12092098 821 + pseudogene vomeronasal 1 receptor, pseudogene 61
Gm45562 7 12101624 to 12105427 3803 - pseudogene predicted gene 45562
Vmn1r-ps62 7 12113259 to 12114076 817 + pseudogene vomeronasal 1 receptor, pseudogene 62
Gm45498 7 12123641 to 12123923 282 + pseudogene predicted gene 45498
Vmn1r-ps63 7 12138326 to 12139311 985 + pseudogene vomeronasal 1 receptor, pseudogene 63
Vmn1r78 7 12152464 to 12153405 941 + protein coding gene vomeronasal 1 receptor 78
Gm45365 7 12157091 to 12157346 255 + pseudogene predicted gene 45365
Vmn1r79 7 12176193 to 12177113 920 + protein coding gene vomeronasal 1 receptor 79
Gm19201 7 12182468 to 12183245 777 - pseudogene predicted gene, 19201
Vmn1r80 7 12192965 to 12193891 926 + protein coding gene vomeronasal 1 receptor 80
Vmn1r-ps64 7 12201702 to 12202356 654 + pseudogene vomeronasal 1 receptor, pseudogene 64
Gm45364 7 12206195 to 12206353 158 - pseudogene predicted gene 45364
Vmn1r-ps65 7 12214595 to 12215545 950 + pseudogene vomeronasal 1 receptor, pseudogene 65
Gm45367 7 12220096 to 12220442 346 - pseudogene predicted gene 45367
Gm4224 7 12221316 to 12225807 4491 + lincRNA gene predicted gene 4224
Vmn1r81 7 12259759 to 12260679 920 - protein coding gene vomeronasal 1 receptor 81
Vmn1r82 7 12304805 to 12305719 914 + protein coding gene vomeronasal 1 receptor 82
Vmn1r83 7 12320250 to 12322128 1878 - protein coding gene vomeronasal 1 receptor 83
Gm23521 7 12358898 to 12359007 109 - miRNA gene predicted gene, 23521
Vmn1r84 7 12361808 to 12362764 956 - protein coding gene vomeronasal 1 receptor 84
Vmn1r-ps66 7 12392272 to 12392883 611 - pseudogene vomeronasal 1 receptor, pseudogene 66
Vmn1r-ps67 7 12399048 to 12399726 678 - pseudogene vomeronasal 1 receptor, pseudogene 67
Vmn1r-ps68 7 12404099 to 12404485 386 - pseudogene vomeronasal 1 receptor, pseudogene 68
Zfp551 7 12415153 to 12422751 7598 - protein coding gene zinc fingr protein 551
Cpgi18313 7 12422331 to 12422775 444 CpG island CpG island 18313
Vmn2r-ps53 7 12445358 to 12468852 23494 + pseudogene vomeronasal 2, receptor, pseudogene 53
Cpgi18314 7 12478164 to 12478827 663 CpG island CpG island 18314
Zfp606 7 12478293 to 12496235 17942 + protein coding gene zinc finger protein 606
Tssr64471 7 12478294 to 12478313 19 + TSS region transcription start site region 64471
Tssr64472 7 12478319 to 12478372 53 + TSS region transcription start site region 64472
Tssr64473 7 12479154 to 12479159 5 + TSS region transcription start site region 64473
2700057C20Rik 7 12498749 to 12499846 1097 unclassified gene RIKEN cDNA 2700057C20 gene
Tssr64474 7 12512488 to 12512512 24 + TSS region transcription start site region 64474
Tssr64475 7 12512513 to 12512520 7 + TSS region transcription start site region 64475
2900092C05Rik 7 12512517 to 12556323 43806 + protein coding gene RIKEN cDNA 2900092C05 gene
Tssr64476 7 12512522 to 12512540 18 + TSS region transcription start site region 64476
Gm15877 7 12517405 to 12518368 963 + pseudogene predicted gene 15877
Gm45475 7 12559860 to 12560168 308 + pseudogene predicted gene 45475
Vmn2r53 7 12581470 to 12606544 25074 - protein coding gene vomeronasal 2, receptor 53
Gm15773 7 12603196 to 12604643 1447 + pseudogene predicted gene 15773
Tssr64477 7 12603573 to 12603600 27 + TSS region transcription start site region 64477
Tssr64478 7 12603725 to 12603730 5 + TSS region transcription start site region 64478
Vmn2r54 7 12615233 to 12636134 20901 - protein coding gene vomeronasal 2, receptor 54
Vmn2r55 7 12651706 to 12684991 33285 - protein coding gene vomeronasal 2, receptor 55
Vmn2r56 7 12693860 to 12733320 39460 - protein coding gene vomeronasal 2, receptor 56
Gm6946 7 12742686 to 12743672 986 + pseudogene predicted gene 6946
Gm18205 7 12760708 to 12761548 840 + pseudogene predicted gene, 18205
Zscan18 7 12768090 to 12803635 35545 - protein coding gene zinc finger and SCAN domain containing 18
Cpgi18315 7 12779893 to 12781118 1225 CpG island CpG island 18315
Tssr70621 7 12780607 to 12780679 72 - TSS region transcription start site region 70621
1700047O18Rik 7 12780860 to 12781602 742 + unclassified gene RIKEN cDNA 1700047O18 gene
Gm4247 7 12793828 to 12794869 1041 - pseudogene predicted gene 4247
Gm18194 7 12796855 to 12797491 636 - pseudogene predicted gene, 18194
Gm45315 7 12797529 to 12797861 332 + pseudogene predicted gene 45315
Cpgi18316 7 12803219 to 12803956 737 CpG island CpG island 18316
A930003G23Rik 7 12803545 to 12804778 1233 unclassified gene RIKEN cDNA A930003G23 gene
Tssr70622 7 12803607 to 12803644 37 - TSS region transcription start site region 70622
Zfp329 7 12804977 to 12818858 13881 - protein coding gene zinc finger protein 329
Tssr70623 7 12807309 to 12807314 5 - TSS region transcription start site region 70623
Cpgi18317 7 12818398 to 12819011 613 CpG island CpG island 18317
Tssr70624 7 12818837 to 12818865 28 - TSS region transcription start site region 70624
Tssr70625 7 12818866 to 12818871 5 - TSS region transcription start site region 70625
Gm45593 7 12825918 to 12828121 2203 + lincRNA gene predicted gene 45593
Cpgi18318 7 12834551 to 12835419 868 CpG island CpG island 18318
Tssr64479 7 12834743 to 12834811 68 + TSS region transcription start site region 64479
Zfp110 7 12834810 to 12850584 15774 + protein coding gene zinc finger protein 110
Tssr64480 7 12834973 to 12835052 79 + TSS region transcription start site region 64480
Tssr64481 7 12835248 to 12835261 13 + TSS region transcription start site region 64481
Tssr64482 7 12835950 to 12835954 4 + TSS region transcription start site region 64482