Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:90033904-90693920

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(6Vmn1r40-Aldh1l1)1Anl 6 89711261 to 90599171 887910 chromosomal deletion deletion, Chr 6, Argonne National Laboratory 1
Vmn1r48 6 90035933 to 90036841 908 - protein coding gene vomeronasal 1 receptor 48
Vmn1r-ps31 6 90056409 to 90056646 237 - pseudogene vomeronasal 1 receptor, pseudogene 31
Gm20534 6 90056626 to 90056797 171 + pseudogene predicted gene 20534
Vmn1r49 6 90072086 to 90078374 6288 - protein coding gene vomeronasal 1, receptor 49
Vmn1r50 6 90107275 to 90108207 932 + protein coding gene vomeronasal 1 receptor 50
Vmn1r51 6 90122643 to 90130645 8002 + protein coding gene vomeronasal 1 receptor 51
Gm20426 6 90131441 to 90232817 101376 - pseudogene predicted gene 20426
Vmn1r-ps32 6 90153047 to 90154002 955 + pseudogene vomeronasal 1 receptor, pseudogene 32
D6Mit227 6 90176944 to 90177074 130 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 227
Vmn1r52 6 90178716 to 90179645 929 + protein coding gene vomeronasal 1 receptor 52
V1ra8 6 90202817 to 90203656 839 + protein coding gene vomeronasal 1 receptor, A8
Vmn1r53 6 90223317 to 90224438 1121 - protein coding gene vomeronasal 1 receptor 53
Cpgi17716 6 90232720 to 90232876 156 CpG island CpG island 17716
Tssr62018 6 90232805 to 90232846 41 - TSS region transcription start site region 62018
Gm4287 6 90235686 to 90236267 581 + pseudogene predicted gene 4287
Vmn1r-ps34 6 90242318 to 90243243 925 + pseudogene vomeronasal 1 receptor, pseudogene 34
Vmn1r54 6 90269106 to 90270053 947 + protein coding gene vomeronasal 1 receptor 54
Gm43891 6 90296222 to 90299333 3111 + unclassified gene predicted gene, 43891
Tssr57628 6 90301213 to 90301220 7 + TSS region transcription start site region 57628
Tssr57629 6 90301231 to 90301236 5 + TSS region transcription start site region 57629
Tssr57630 6 90301241 to 90301294 53 + TSS region transcription start site region 57630
BC048671 6 90301270 to 90305449 4179 + protein coding gene cDNA sequence BC048671
Tssr57631 6 90302066 to 90302081 15 + TSS region transcription start site region 57631
Tssr57632 6 90302083 to 90302140 57 + TSS region transcription start site region 57632
Tssr57633 6 90302142 to 90302150 8 + TSS region transcription start site region 57633
Tssr57634 6 90302159 to 90302168 9 + TSS region transcription start site region 57634
Tssr57635 6 90302513 to 90302516 3 + TSS region transcription start site region 57635
Tssr57636 6 90302527 to 90302535 8 + TSS region transcription start site region 57636
Tssr57637 6 90302540 to 90302561 21 + TSS region transcription start site region 57637
Chst13 6 90308351 to 90325185 16834 - protein coding gene carbohydrate sulfotransferase 13
Cpgi17717 6 90308816 to 90310181 1365 CpG island CpG island 17717
Tssr62019 6 90318842 to 90318848 6 - TSS region transcription start site region 62019
Tssr57638 6 90320767 to 90320771 4 + TSS region transcription start site region 57638
Cpgi17718 6 90324884 to 90325375 491 CpG island CpG island 17718
Tssr1932 6 90325177 to 90325203 26 - TSS region transcription start site region 1932
Tssr62020 6 90325214 to 90325227 13 - TSS region transcription start site region 62020
Tssr57639 6 90333270 to 90333306 36 + TSS region transcription start site region 57639
Uroc1 6 90333284 to 90364551 31267 + protein coding gene urocanase domain containing 1
D6Mit131 6 90353901 to 90354039 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 131
Tssr57640 6 90363300 to 90363317 17 + TSS region transcription start site region 57640
Tssr57641 6 90363383 to 90363392 9 + TSS region transcription start site region 57641
Tssr57642 6 90363904 to 90363920 16 + TSS region transcription start site region 57642
Tssr57643 6 90364201 to 90364205 4 + TSS region transcription start site region 57643
Cpgi17719 6 90369094 to 90370754 1660 CpG island CpG island 17719
Tssr57644 6 90369486 to 90369657 171 + TSS region transcription start site region 57644
Zxdc 6 90369492 to 90403490 33998 + protein coding gene ZXD family zinc finger C
Tssr57645 6 90384493 to 90384533 40 + TSS region transcription start site region 57645
C030015A19Rik 6 90386807 to 90389357 2550 + unclassified gene RIKEN cDNA C030015A19 gene
Cfap100 6 90403479 to 90428797 25318 - protein coding gene cilia and flagella associated protein 100
Cpgi17720 6 90428378 to 90428890 512 CpG island CpG island 17720
Tssr62021 6 90428401 to 90428455 54 - TSS region transcription start site region 62021
Tssr57646 6 90428520 to 90428565 45 + TSS region transcription start site region 57646
Gm44117 6 90459711 to 90461468 1757 - lincRNA gene predicted gene, 44117
Cpgi17721 6 90461806 to 90463843 2037 CpG island CpG island 17721
Tssr57647 6 90462562 to 90462587 25 + TSS region transcription start site region 57647
Klf15 6 90462576 to 90475238 12662 + protein coding gene Kruppel-like factor 15
Tssr57648 6 90462588 to 90462607 19 + TSS region transcription start site region 57648
Tssr57649 6 90462614 to 90462636 22 + TSS region transcription start site region 57649
Tssr57650 6 90465256 to 90465277 21 + TSS region transcription start site region 57650
Tssr57651 6 90465287 to 90465301 14 + TSS region transcription start site region 57651
Tssr57652 6 90466281 to 90466292 11 + TSS region transcription start site region 57652
Tssr57653 6 90466311 to 90466330 19 + TSS region transcription start site region 57653
Tssr57654 6 90474297 to 90474307 10 + TSS region transcription start site region 57654
Gm44421 6 90478466 to 90479686 1220 + lincRNA gene predicted gene, 44421
D6Mit130 6 90481724 to 90481927 203 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 130
Tssr57655 6 90486377 to 90486388 11 + TSS region transcription start site region 57655
Gm45901 6 90486393 to 90519480 33087 + lincRNA gene predicted gene 45901
Tssr57656 6 90486410 to 90486430 20 + TSS region transcription start site region 57656
D6Mit363 6 90486716 to 90486827 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 363
Gm44236 6 90513302 to 90513814 512 + unclassified gene predicted gene, 44236
Cpgi17722 6 90538044 to 90538230 186 CpG island CpG island 17722
Tssr57657 6 90540752 to 90540781 29 + TSS region transcription start site region 57657
Tssr57658 6 90540786 to 90540834 48 + TSS region transcription start site region 57658
Cpgi17723 6 90550389 to 90550551 162 CpG island CpG island 17723
Tssr57659 6 90550529 to 90550570 41 + TSS region transcription start site region 57659
Tssr57660 6 90550753 to 90550764 11 + TSS region transcription start site region 57660
Tssr57661 6 90550789 to 90550849 60 + TSS region transcription start site region 57661
Aldh1l1 6 90550793 to 90599171 48378 + protein coding gene aldehyde dehydrogenase 1 family, member L1
Tssr57662 6 90550863 to 90550871 8 + TSS region transcription start site region 57662
Tssr57663 6 90552151 to 90552165 14 + TSS region transcription start site region 57663
Tssr57664 6 90552183 to 90552194 11 + TSS region transcription start site region 57664
Tssr57665 6 90552204 to 90552206 2 + TSS region transcription start site region 57665
Tssr57666 6 90552249 to 90552262 13 + TSS region transcription start site region 57666
Tssr57667 6 90552302 to 90552324 22 + TSS region transcription start site region 57667
Tssr1933 6 90552399 to 90552410 11 + TSS region transcription start site region 1933
Tssr57668 6 90552499 to 90552517 18 + TSS region transcription start site region 57668
Tssr57669 6 90553007 to 90553050 43 + TSS region transcription start site region 57669
Tssr57670 6 90559356 to 90559363 7 + TSS region transcription start site region 57670
Tssr57671 6 90559391 to 90559414 23 + TSS region transcription start site region 57671
Tssr57672 6 90565937 to 90565969 32 + TSS region transcription start site region 57672
Tssr1934 6 90570787 to 90570795 8 + TSS region transcription start site region 1934
Tssr57673 6 90570834 to 90570866 32 + TSS region transcription start site region 57673
Tssr57674 6 90571745 to 90571759 14 + TSS region transcription start site region 57674
Tssr57675 6 90571774 to 90571791 17 + TSS region transcription start site region 57675
Gm15756 6 90596697 to 90599948 3251 - antisense lncRNA gene predicted gene 15756
Tssr57676 6 90597673 to 90597689 16 + TSS region transcription start site region 57676
Tssr62022 6 90599919 to 90599962 43 - TSS region transcription start site region 62022
Tssr57677 6 90601931 to 90601938 7 + TSS region transcription start site region 57677
Tssr57678 6 90601956 to 90601965 9 + TSS region transcription start site region 57678
Tssr57679 6 90601975 to 90601987 12 + TSS region transcription start site region 57679
Tssr57680 6 90601994 to 90602003 9 + TSS region transcription start site region 57680
Tssr57681 6 90602023 to 90602030 7 + TSS region transcription start site region 57681
Gm45937 6 90602099 to 90606928 4829 - lncRNA gene predicted gene, 45937
Cpgi17724 6 90604387 to 90605289 902 CpG island CpG island 17724
Tssr57682 6 90604699 to 90604754 55 + TSS region transcription start site region 57682
Slc41a3 6 90604729 to 90646412 41683 + protein coding gene solute carrier family 41, member 3
Tssr57683 6 90604908 to 90604959 51 + TSS region transcription start site region 57683
Tssr57684 6 90604972 to 90604986 14 + TSS region transcription start site region 57684
Tssr57685 6 90609464 to 90609488 24 + TSS region transcription start site region 57685
Tssr57686 6 90618478 to 90618510 32 + TSS region transcription start site region 57686
Tssr57687 6 90619101 to 90619115 14 + TSS region transcription start site region 57687
Tssr57688 6 90619144 to 90619158 14 + TSS region transcription start site region 57688
Tssr57689 6 90619169 to 90619186 17 + TSS region transcription start site region 57689
Tssr57690 6 90619222 to 90619233 11 + TSS region transcription start site region 57690
Tssr57691 6 90619241 to 90619255 14 + TSS region transcription start site region 57691
Tssr57692 6 90619351 to 90619363 12 + TSS region transcription start site region 57692
Tssr57693 6 90619365 to 90619382 17 + TSS region transcription start site region 57693
Iqsec1 6 90659596 to 90988458 328862 - protein coding gene IQ motif and Sec7 domain 1
Tssr62023 6 90659866 to 90659872 6 - TSS region transcription start site region 62023
Tssr62024 6 90660334 to 90660336 2 - TSS region transcription start site region 62024
Tssr62025 6 90661752 to 90661770 18 - TSS region transcription start site region 62025
Tssr62026 6 90662053 to 90662064 11 - TSS region transcription start site region 62026
Tssr62027 6 90662099 to 90662119 20 - TSS region transcription start site region 62027
Tssr62028 6 90662170 to 90662220 50 - TSS region transcription start site region 62028
Tssr62029 6 90662249 to 90662270 21 - TSS region transcription start site region 62029
Tssr62030 6 90662725 to 90662763 38 - TSS region transcription start site region 62030
Tssr57694 6 90662808 to 90662829 21 + TSS region transcription start site region 57694
Tssr62031 6 90662868 to 90662885 17 - TSS region transcription start site region 62031
Tssr62032 6 90663050 to 90663061 11 - TSS region transcription start site region 62032
Tssr62033 6 90670469 to 90670495 26 - TSS region transcription start site region 62033
Gm24816 6 90681370 to 90681520 150 - miRNA gene predicted gene, 24816
Gm44123 6 90689731 to 90690829 1098 + antisense lncRNA gene predicted gene, 44123
Tssr62034 6 90689757 to 90689789 32 - TSS region transcription start site region 62034