Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:88509461-91230529

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362 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sec61a1 6 88503607 to 88518800 15193 - protein coding gene Sec61 alpha 1 subunit (S. cerevisiae)
Tssr61981 6 88515408 to 88515426 18 - TSS region transcription start site region 61981
Cpgi17702 6 88518161 to 88519491 1330 CpG island CpG island 17702
Tssr61982 6 88518735 to 88518757 22 - TSS region transcription start site region 61982
Tssr61983 6 88518760 to 88518880 120 - TSS region transcription start site region 61983
Gm44430 6 88519013 to 88520007 994 + unclassified gene predicted gene, 44430
Kbtbd12 6 88547722 to 88627448 79726 - protein coding gene kelch repeat and BTB (POZ) domain containing 12
D6Mit261.1 6 88574968 to 88575090 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 261.1
D6Mit261 6 88575060 to 88575178 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 261
Stheal5 6 88575060 to 88575178 118 QTL soft tissue heal 5
Tssr57592 6 88575988 to 88575989 1 + TSS region transcription start site region 57592
Tssr1929 6 88578311 to 88578312 1 + TSS region transcription start site region 1929
Tssr61984 6 88601303 to 88601308 5 - TSS region transcription start site region 61984
Cpgi17703 6 88627224 to 88627878 654 CpG island CpG island 17703
Tssr61985 6 88627422 to 88627454 32 - TSS region transcription start site region 61985
Tssr57593 6 88636035 to 88636039 4 + TSS region transcription start site region 57593
Gm26588 6 88716422 to 88725860 9438 - antisense lncRNA gene predicted gene, 26588
Cpgi17704 6 88723907 to 88725282 1375 CpG island CpG island 17704
Mgll 6 88724412 to 88828360 103948 + protein coding gene monoglyceride lipase
Tssr57594 6 88724427 to 88724430 3 + TSS region transcription start site region 57594
Tssr57595 6 88724450 to 88724461 11 + TSS region transcription start site region 57595
Tssr57596 6 88724462 to 88724478 16 + TSS region transcription start site region 57596
Tssr57597 6 88724489 to 88724502 13 + TSS region transcription start site region 57597
Tssr57598 6 88724667 to 88724751 84 + TSS region transcription start site region 57598
Tssr57599 6 88724876 to 88724924 48 + TSS region transcription start site region 57599
Tssr61986 6 88726779 to 88726801 22 - TSS region transcription start site region 61986
Tssr57600 6 88733550 to 88733580 30 + TSS region transcription start site region 57600
Tssr57601 6 88733582 to 88733586 4 + TSS region transcription start site region 57601
Tssr57602 6 88733595 to 88733612 17 + TSS region transcription start site region 57602
Gm44005 6 88738192 to 88741364 3172 + unclassified gene predicted gene, 44005
Gm38859 6 88738613 to 88744194 5581 - lncRNA gene predicted gene, 38859
D6Mit190 6 88741422 to 88741570 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 190
Gm43999 6 88742727 to 88745615 2888 + unclassified gene predicted gene, 43999
Cpgi17705 6 88776707 to 88776864 157 CpG island CpG island 17705
Gm43937 6 88784330 to 88787451 3121 - unclassified gene predicted gene, 43937
Tssr1930 6 88798214 to 88798219 5 + TSS region transcription start site region 1930
Gm44001 6 88802243 to 88806015 3772 + unclassified gene predicted gene, 44001
Tssr1931 6 88802728 to 88802731 3 + TSS region transcription start site region 1931
Tssr57603 6 88820157 to 88820169 12 + TSS region transcription start site region 57603
Tssr61987 6 88825844 to 88825848 4 - TSS region transcription start site region 61987
Tssr57604 6 88827394 to 88827402 8 + TSS region transcription start site region 57604
Tssr57605 6 88835207 to 88835210 3 + TSS region transcription start site region 57605
Tssr57606 6 88835269 to 88835273 4 + TSS region transcription start site region 57606
Abtb1 6 88835914 to 88841984 6070 - protein coding gene ankyrin repeat and BTB (POZ) domain containing 1
Cpgi17706 6 88836207 to 88836554 347 CpG island CpG island 17706
Tssr61988 6 88837442 to 88837451 9 - TSS region transcription start site region 61988
Cpgi17707 6 88839263 to 88839635 372 CpG island CpG island 17707
Cpgi17708 6 88841321 to 88843290 1969 CpG island CpG island 17708
Tssr61989 6 88841828 to 88841844 16 - TSS region transcription start site region 61989
Tssr61990 6 88841851 to 88841905 54 - TSS region transcription start site region 61990
Tssr61991 6 88841936 to 88841943 7 - TSS region transcription start site region 61991
Podxl2 6 88842558 to 88875044 32486 - protein coding gene podocalyxin-like 2
Gm15612 6 88842854 to 88847274 4420 + antisense lncRNA gene predicted gene 15612
Cpgi17709 6 88873896 to 88875554 1658 CpG island CpG island 17709
Tssr61992 6 88874049 to 88874070 21 - TSS region transcription start site region 61992
Tssr61993 6 88874758 to 88874784 26 - TSS region transcription start site region 61993
Tssr61994 6 88874984 to 88875030 46 - TSS region transcription start site region 61994
Tssr61995 6 88875035 to 88875053 18 - TSS region transcription start site region 61995
D6Mit364 6 88880212 to 88880291 79 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 364
Gm36189 6 88882655 to 88883177 522 + pseudogene predicted gene, 36189
Mcm2 6 88883474 to 88898780 15306 - protein coding gene minichromosome maintenance complex component 2
Tssr61996 6 88897380 to 88897397 17 - TSS region transcription start site region 61996
Cpgi17710 6 88898351 to 88898963 612 CpG island CpG island 17710
Tssr61997 6 88898664 to 88898713 49 - TSS region transcription start site region 61997
Cpgi17711 6 88901887 to 88902962 1075 CpG island CpG island 17711
Tpra1 6 88902251 to 88912238 9987 + protein coding gene transmembrane protein, adipocyte asscociated 1
Tssr57607 6 88902293 to 88902351 58 + TSS region transcription start site region 57607
Tssr57608 6 88902386 to 88902414 28 + TSS region transcription start site region 57608
Tssr57609 6 88902415 to 88902428 13 + TSS region transcription start site region 57609
Tssr57610 6 88902454 to 88902535 81 + TSS region transcription start site region 57610
Tssr57611 6 88902545 to 88902559 14 + TSS region transcription start site region 57611
Tssr61998 6 88902748 to 88902768 20 - TSS region transcription start site region 61998
Tssr61999 6 88903891 to 88903930 39 - TSS region transcription start site region 61999
Gm36268 6 88914789 to 88917100 2311 - lncRNA gene predicted gene, 36268
Gm44178 6 88919708 to 88922637 2929 + unclassified gene predicted gene, 44178
Gm36354 6 88939921 to 88946480 6559 + lncRNA gene predicted gene, 36354
Tssr57612 6 88944565 to 88944574 9 + TSS region transcription start site region 57612
Gm36409 6 88964652 to 88973887 9235 - lncRNA gene predicted gene, 36409
D6Mit263 6 88981024 to 88981170 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 263
Pas1c 6 88981024 to 88981170 146 QTL pulmonary adenoma susceptibility 1c
Fcsa1 6 88981024 to 88981170 146 QTL femoral cross-sectional area 1
Gm36505 6 88997977 to 89000462 2485 + lncRNA gene predicted gene, 36505
Tssr57613 6 89000609 to 89000626 17 + TSS region transcription start site region 57613
Tssr62000 6 89004167 to 89004170 3 - TSS region transcription start site region 62000
Gm36639 6 89023837 to 89025913 2076 + lncRNA gene predicted gene, 36639
D6Mit248 6 89043668 to 89043800 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 248
Tssr57614 6 89096103 to 89096115 12 + TSS region transcription start site region 57614
4933427D06Rik 6 89096110 to 89110039 13929 + lincRNA gene RIKEN cDNA 4933427D06 gene
Tssr57615 6 89096154 to 89096163 9 + TSS region transcription start site region 57615
Tssr57616 6 89096173 to 89096178 5 + TSS region transcription start site region 57616
Tssr57617 6 89140992 to 89141014 22 + TSS region transcription start site region 57617
Gm1965 6 89140994 to 89147370 6376 + lincRNA gene predicted gene 1965
Gm6507 6 89184672 to 89186025 1353 - lincRNA gene predicted gene 6507
Gm44203 6 89201253 to 89201559 306 + pseudogene predicted gene, 44203
Gm839 6 89212197 to 89216179 3982 - lincRNA gene predicted gene 839
Cpgi17712 6 89235681 to 89236074 393 CpG island CpG island 17712
Gm25961 6 89249468 to 89249602 134 - rRNA gene predicted gene, 25961
Tssr57618 6 89254392 to 89254396 4 + TSS region transcription start site region 57618
Gm44204 6 89257820 to 89259136 1316 - lincRNA gene predicted gene, 44204
Tssr62001 6 89258246 to 89258277 31 - TSS region transcription start site region 62001
4930512J16Rik 6 89269511 to 89285725 16214 - lincRNA gene RIKEN cDNA 4930512J16 gene
Tssr62002 6 89273206 to 89273248 42 - TSS region transcription start site region 62002
Gm36735 6 89273296 to 89276330 3034 + lncRNA gene predicted gene, 36735
Tssr57619 6 89294891 to 89294905 14 + TSS region transcription start site region 57619
Tssr57620 6 89294939 to 89294955 16 + TSS region transcription start site region 57620
Gm26811 6 89304630 to 89327621 22991 + antisense lncRNA gene predicted gene, 26811
Plxna1 6 89316313 to 89362613 46300 - protein coding gene plexin A1
Tssr62003 6 89316683 to 89316687 4 - TSS region transcription start site region 62003
Tssr62004 6 89316749 to 89316766 17 - TSS region transcription start site region 62004
Tssr62005 6 89317972 to 89317986 14 - TSS region transcription start site region 62005
Gm44207 6 89345140 to 89346563 1423 + unclassified gene predicted gene, 44207
Tssr62006 6 89348580 to 89348604 24 - TSS region transcription start site region 62006
Tssr62007 6 89357709 to 89357721 12 - TSS region transcription start site region 62007
Cpgi17713 6 89361257 to 89363385 2128 CpG island CpG island 17713
Gm40415 6 89361355 to 89362396 1041 + protein coding gene predicted gene, 40415
Tssr62008 6 89362553 to 89362574 21 - TSS region transcription start site region 62008
Tssr62009 6 89362581 to 89362637 56 - TSS region transcription start site region 62009
Tssr62010 6 89363579 to 89363593 14 - TSS region transcription start site region 62010
Tssr62011 6 89364384 to 89364418 34 - TSS region transcription start site region 62011
Tssr62012 6 89364495 to 89364509 14 - TSS region transcription start site region 62012
Tssr57621 6 89364616 to 89364648 32 + TSS region transcription start site region 57621
Chchd6 6 89383146 to 89595652 212506 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 6
Tssr57622 6 89392101 to 89392140 39 + TSS region transcription start site region 57622
Tssr57623 6 89413907 to 89413918 11 + TSS region transcription start site region 57623
Tssr62013 6 89415911 to 89415928 17 - TSS region transcription start site region 62013
Tssr57624 6 89422241 to 89422254 13 + TSS region transcription start site region 57624
Gm46966 6 89452863 to 89467380 14517 + lncRNA gene predicted gene, 46966
Gm43903 6 89526839 to 89527455 616 - unclassified gene predicted gene, 43903
Tssr62014 6 89535055 to 89535070 15 - TSS region transcription start site region 62014
Cpgi17714 6 89595070 to 89595805 735 CpG island CpG island 17714
Tssr62015 6 89595547 to 89595645 98 - TSS region transcription start site region 62015
Tssr62016 6 89595647 to 89595658 11 - TSS region transcription start site region 62016
Gm19896 6 89599298 to 89599666 368 - pseudogene predicted gene, 19896
D6Mit325 6 89617939 to 89618109 170 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 325
Cpgi17715 6 89643727 to 89644740 1013 CpG island CpG island 17715
Tssr57625 6 89643982 to 89644007 25 + TSS region transcription start site region 57625
Txnrd3 6 89643988 to 89675529 31541 + protein coding gene thioredoxin reductase 3
Tssr57626 6 89644015 to 89644062 47 + TSS region transcription start site region 57626
Tssr57627 6 89644065 to 89644074 9 + TSS region transcription start site region 57627
Vmn1r-ps25 6 89698719 to 89699517 798 - pseudogene vomeronasal 1 receptor, pseudogene 25
Vmn1r40 6 89711261 to 89715135 3874 + protein coding gene vomeronasal 1 receptor 40
Del(6Vmn1r40-Aldh1l1)1Anl 6 89711261 to 90599171 887910 chromosomal deletion deletion, Chr 6, Argonne National Laboratory 1
Vmn1r41 6 89740888 to 89747414 6526 + protein coding gene vomeronasal 1 receptor 41
Vmn1r-ps26 6 89789449 to 89790288 839 + pseudogene vomeronasal 1 receptor, pseudogene 26
Vmn1r-ps27 6 89805008 to 89805944 936 - pseudogene vomeronasal 1 receptor, pseudogene 27
Vmn1r42 6 89844518 to 89845615 1097 - protein coding gene vomeronasal 1 receptor 42
Tssr62017 6 89867300 to 89867307 7 - TSS region transcription start site region 62017
Vmn1r43 6 89869461 to 89870529 1068 - protein coding gene vomeronasal 1 receptor 43
Vmn1r44 6 89892161 to 89894206 2045 + protein coding gene vomeronasal 1 receptor 44
Vmn1r-ps28 6 89907677 to 89908618 941 + pseudogene vomeronasal 1 receptor, pseudogene 28
Vmn1r45 6 89931650 to 89940507 8857 - protein coding gene vomeronasal 1 receptor 45
Vmn1r46 6 89969304 to 89977100 7796 + protein coding gene vomeronasal 1 receptor 46
Vmn1r-ps29 6 89997612 to 90004589 6977 + pseudogene vomeronasal 1 receptor, pseudogene 29
Vmn1r47 6 90021888 to 90022820 932 + protein coding gene vomeronasal 1 receptor 47
Vmn1r48 6 90035933 to 90036841 908 - protein coding gene vomeronasal 1 receptor 48
Vmn1r-ps31 6 90056409 to 90056646 237 - pseudogene vomeronasal 1 receptor, pseudogene 31
Gm20534 6 90056626 to 90056797 171 + pseudogene predicted gene 20534
Vmn1r49 6 90072086 to 90078374 6288 - protein coding gene vomeronasal 1, receptor 49
Vmn1r50 6 90107275 to 90108207 932 + protein coding gene vomeronasal 1 receptor 50
Vmn1r51 6 90122643 to 90130645 8002 + protein coding gene vomeronasal 1 receptor 51
Gm20426 6 90131441 to 90232817 101376 - pseudogene predicted gene 20426
Vmn1r-ps32 6 90153047 to 90154002 955 + pseudogene vomeronasal 1 receptor, pseudogene 32
D6Mit227 6 90176944 to 90177074 130 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 227
Vmn1r52 6 90178716 to 90179645 929 + protein coding gene vomeronasal 1 receptor 52
V1ra8 6 90202817 to 90203656 839 + protein coding gene vomeronasal 1 receptor, A8
Vmn1r53 6 90223317 to 90224438 1121 - protein coding gene vomeronasal 1 receptor 53
Cpgi17716 6 90232720 to 90232876 156 CpG island CpG island 17716
Tssr62018 6 90232805 to 90232846 41 - TSS region transcription start site region 62018
Gm4287 6 90235686 to 90236267 581 + pseudogene predicted gene 4287
Vmn1r-ps34 6 90242318 to 90243243 925 + pseudogene vomeronasal 1 receptor, pseudogene 34
Vmn1r54 6 90269106 to 90270053 947 + protein coding gene vomeronasal 1 receptor 54
Gm43891 6 90296222 to 90299333 3111 + unclassified gene predicted gene, 43891
Tssr57628 6 90301213 to 90301220 7 + TSS region transcription start site region 57628
Tssr57629 6 90301231 to 90301236 5 + TSS region transcription start site region 57629
Tssr57630 6 90301241 to 90301294 53 + TSS region transcription start site region 57630
BC048671 6 90301270 to 90305449 4179 + protein coding gene cDNA sequence BC048671
Tssr57631 6 90302066 to 90302081 15 + TSS region transcription start site region 57631
Tssr57632 6 90302083 to 90302140 57 + TSS region transcription start site region 57632
Tssr57633 6 90302142 to 90302150 8 + TSS region transcription start site region 57633
Tssr57634 6 90302159 to 90302168 9 + TSS region transcription start site region 57634
Tssr57635 6 90302513 to 90302516 3 + TSS region transcription start site region 57635
Tssr57636 6 90302527 to 90302535 8 + TSS region transcription start site region 57636
Tssr57637 6 90302540 to 90302561 21 + TSS region transcription start site region 57637
Chst13 6 90308351 to 90325185 16834 - protein coding gene carbohydrate sulfotransferase 13
Cpgi17717 6 90308816 to 90310181 1365 CpG island CpG island 17717
Tssr62019 6 90318842 to 90318848 6 - TSS region transcription start site region 62019
Tssr57638 6 90320767 to 90320771 4 + TSS region transcription start site region 57638
Cpgi17718 6 90324884 to 90325375 491 CpG island CpG island 17718
Tssr1932 6 90325177 to 90325203 26 - TSS region transcription start site region 1932
Tssr62020 6 90325214 to 90325227 13 - TSS region transcription start site region 62020
Tssr57639 6 90333270 to 90333306 36 + TSS region transcription start site region 57639
Uroc1 6 90333284 to 90364551 31267 + protein coding gene urocanase domain containing 1
D6Mit131 6 90353901 to 90354039 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 131
Tssr57640 6 90363300 to 90363317 17 + TSS region transcription start site region 57640
Tssr57641 6 90363383 to 90363392 9 + TSS region transcription start site region 57641
Tssr57642 6 90363904 to 90363920 16 + TSS region transcription start site region 57642
Tssr57643 6 90364201 to 90364205 4 + TSS region transcription start site region 57643
Cpgi17719 6 90369094 to 90370754 1660 CpG island CpG island 17719
Tssr57644 6 90369486 to 90369657 171 + TSS region transcription start site region 57644
Zxdc 6 90369492 to 90403490 33998 + protein coding gene ZXD family zinc finger C