Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:85108049-85438422

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5878 6 85111416 to 85126094 14678 - protein coding gene predicted gene 5878
Gm43959 6 85111693 to 85112269 576 + pseudogene predicted gene, 43959
Tssr1913 6 85122729 to 85122731 2 - TSS region transcription start site region 1913
D6Mit22 6 85124788 to 85124916 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 22
Cpgi17632 6 85125606 to 85126366 760 CpG island CpG island 17632
Tssr61737 6 85126041 to 85126054 13 - TSS region transcription start site region 61737
Tssr61738 6 85126063 to 85126079 16 - TSS region transcription start site region 61738
Tssr61739 6 85126088 to 85126099 11 - TSS region transcription start site region 61739
Tssr61740 6 85126125 to 85126132 7 - TSS region transcription start site region 61740
Spr 6 85133680 to 85137764 4084 - protein coding gene sepiapterin reductase
Cpgi17633 6 85137295 to 85137938 643 CpG island CpG island 17633
Tssr61741 6 85137743 to 85137781 38 - TSS region transcription start site region 61741
Tssr61742 6 85137798 to 85137807 9 - TSS region transcription start site region 61742
Gm10444 6 85140505 to 85143649 3144 + pseudogene predicted pseudogene 10444
Gm44285 6 85145446 to 85146385 939 - pseudogene predicted gene, 44285
Gm22893 6 85150336 to 85150451 115 + snoRNA gene predicted gene, 22893
Cpgi17634 6 85154893 to 85155441 548 CpG island CpG island 17634
Spr-ps1 6 85154983 to 85155971 988 + pseudogene sepiapterin reductase pseudogene 1
Tssr57409 6 85154992 to 85155006 14 + TSS region transcription start site region 57409
Gm33200 6 85165835 to 85167374 1539 + lncRNA gene predicted gene, 33200
Cpgi17635 6 85185931 to 85186370 439 CpG island CpG island 17635
Cpgi17636 6 85186546 to 85187036 490 CpG island CpG island 17636
Cpgi17637 6 85187151 to 85188834 1683 CpG island CpG island 17637
Tssr57410 6 85187497 to 85187510 13 + TSS region transcription start site region 57410
Tssr57411 6 85187511 to 85187523 12 + TSS region transcription start site region 57411
Tssr57412 6 85187526 to 85187569 43 + TSS region transcription start site region 57412
Emx1 6 85187931 to 85204463 16532 + protein coding gene empty spiracles homeobox 1
Cpgi17638 6 85189940 to 85190900 960 CpG island CpG island 17638
Cpgi17639 6 85193930 to 85194273 343 CpG island CpG island 17639
Sfxn5 6 85213049 to 85333422 120373 - protein coding gene sideroflexin 5
Tssr61743 6 85213900 to 85213906 6 - TSS region transcription start site region 61743
Cpgi17640 6 85223927 to 85224097 170 CpG island CpG island 17640
D930014O13Rik 6 85243862 to 85246656 2794 unclassified gene RIKEN cDNA D930014O13 gene
D6Mit391 6 85277319 to 85277419 100 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 391
D6Mit6 6 85277319 to 85277417 98 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 6
Tssr57413 6 85298490 to 85298495 5 + TSS region transcription start site region 57413
Cpgi17641 6 85332367 to 85334019 1652 CpG island CpG island 17641
Tssr57414 6 85332564 to 85332566 2 + TSS region transcription start site region 57414
Tssr61744 6 85333412 to 85333441 29 - TSS region transcription start site region 61744
Tssr61745 6 85333478 to 85333489 11 - TSS region transcription start site region 61745
Rab11fip5 6 85334962 to 85374634 39672 - protein coding gene RAB11 family interacting protein 5 (class I)
Mir705 6 85336292 to 85336373 81 - miRNA gene microRNA 705
Tssr61746 6 85370098 to 85370109 11 - TSS region transcription start site region 61746
Cpgi17642 6 85373879 to 85375206 1327 CpG island CpG island 17642
Tssr1914 6 85374424 to 85374445 21 - TSS region transcription start site region 1914
Tssr61747 6 85374542 to 85374553 11 - TSS region transcription start site region 61747
Tssr61748 6 85374574 to 85374579 5 - TSS region transcription start site region 61748
Tssr61749 6 85374583 to 85374592 9 - TSS region transcription start site region 61749
Tssr61750 6 85374606 to 85374664 58 - TSS region transcription start site region 61750
Tssr61751 6 85374679 to 85374704 25 - TSS region transcription start site region 61751
Cpgi17643 6 85409104 to 85409442 338 CpG island CpG island 17643
Noto 6 85423886 to 85428877 4991 + protein coding gene notochord homeobox
Cpgi17644 6 85423985 to 85424381 396 CpG island CpG island 17644
Cpgi17645 6 85431764 to 85432433 669 CpG island CpG island 17645
Tssr57415 6 85431970 to 85432010 40 + TSS region transcription start site region 57415
Smyd5 6 85431989 to 85446435 14446 + protein coding gene SET and MYND domain containing 5
Tssr57416 6 85432011 to 85432045 34 + TSS region transcription start site region 57416