Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:72391109-74803673

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbts1 6 18234148 to 73387692 55153544 QTL diabetes 1
Is(In8B2-8B3.1;6C1)1Tshir 6 68148517 to 74207573 6059056 cytogenetic marker Insertion, Chr8 B2-B3.1 into Chr 6C1, Toshihiko Shiroishi 1
Tssr61454 6 72394538 to 72394545 7 - TSS region transcription start site region 61454
Tssr61455 6 72394550 to 72394575 25 - TSS region transcription start site region 61455
Tssr61456 6 72394586 to 72394603 17 - TSS region transcription start site region 61456
Tssr57130 6 72395778 to 72395784 6 + TSS region transcription start site region 57130
Cpgi17544 6 72414116 to 72414553 437 CpG island CpG island 17544
Tssr57131 6 72414301 to 72414319 18 + TSS region transcription start site region 57131
Ggcx 6 72414308 to 72430712 16404 + protein coding gene gamma-glutamyl carboxylase
Tssr57132 6 72414323 to 72414352 29 + TSS region transcription start site region 57132
Tssr57133 6 72414353 to 72414388 35 + TSS region transcription start site region 57133
Tssr1889 6 72430430 to 72430447 17 + TSS region transcription start site region 1889
Mat2a 6 72432799 to 72439558 6759 - protein coding gene methionine adenosyltransferase II, alpha
Tssr61457 6 72437072 to 72437086 14 - TSS region transcription start site region 61457
Cpgi17545 6 72438753 to 72440335 1582 CpG island CpG island 17545
Tssr57134 6 72439034 to 72439065 31 + TSS region transcription start site region 57134
Particl 6 72439051 to 72440610 1559 + lncRNA gene promoter of Mat2a antisense radiation induced circulating long non-coding RNA
Tssr61458 6 72439549 to 72439564 15 - TSS region transcription start site region 61458
Cpgi17546 6 72512461 to 72513032 571 CpG island CpG island 17546
Sh2d6 6 72513641 to 72521707 8066 - protein coding gene SH2 domain containing 6
Tssr61459 6 72520003 to 72520037 34 - TSS region transcription start site region 61459
Tssr61460 6 72520631 to 72520643 12 - TSS region transcription start site region 61460
Tssr61461 6 72521671 to 72521674 3 - TSS region transcription start site region 61461
Tssr61462 6 72521693 to 72521707 14 - TSS region transcription start site region 61462
Tssr61463 6 72521710 to 72521739 29 - TSS region transcription start site region 61463
Tssr61464 6 72522458 to 72522480 22 - TSS region transcription start site region 61464
Tssr61465 6 72522577 to 72522585 8 - TSS region transcription start site region 61465
Tssr1890 6 72538224 to 72538260 36 + TSS region transcription start site region 1890
Tssr1891 6 72544324 to 72544349 25 - TSS region transcription start site region 1891
Capg 6 72544391 to 72562983 18592 + protein coding gene capping protein (actin filament), gelsolin-like
Tssr57135 6 72544411 to 72544449 38 + TSS region transcription start site region 57135
Tssr57136 6 72549163 to 72549191 28 + TSS region transcription start site region 57136
Tssr57137 6 72549252 to 72549264 12 + TSS region transcription start site region 57137
Tssr57138 6 72549414 to 72549428 14 + TSS region transcription start site region 57138
Tssr57139 6 72549430 to 72549478 48 + TSS region transcription start site region 57139
Tssr57140 6 72549732 to 72549763 31 + TSS region transcription start site region 57140
Tssr57141 6 72550183 to 72550209 26 + TSS region transcription start site region 57141
Tssr61466 6 72550844 to 72550863 19 - TSS region transcription start site region 61466
Tssr61467 6 72552219 to 72552231 12 - TSS region transcription start site region 61467
Tssr61468 6 72552724 to 72552781 57 - TSS region transcription start site region 61468
Cpgi17547 6 72552850 to 72553092 242 CpG island CpG island 17547
Tssr57142 6 72555773 to 72555803 30 + TSS region transcription start site region 57142
Tssr57143 6 72555815 to 72555829 14 + TSS region transcription start site region 57143
Tssr57144 6 72556080 to 72556118 38 + TSS region transcription start site region 57144
Tssr57145 6 72556146 to 72556158 12 + TSS region transcription start site region 57145
Tssr57146 6 72556161 to 72556177 16 + TSS region transcription start site region 57146
Tssr57147 6 72557334 to 72557343 9 + TSS region transcription start site region 57147
Tssr61469 6 72557789 to 72557815 26 - TSS region transcription start site region 61469
Tssr57148 6 72558673 to 72558687 14 + TSS region transcription start site region 57148
Tssr57149 6 72558766 to 72558856 90 + TSS region transcription start site region 57149
Elmod3 6 72565922 to 72598413 32491 - protein coding gene ELMO/CED-12 domain containing 3
Cpgi17548 6 72598124 to 72598970 846 CpG island CpG island 17548
Tssr61470 6 72598330 to 72598368 38 - TSS region transcription start site region 61470
Tssr61471 6 72598381 to 72598424 43 - TSS region transcription start site region 61471
Tssr57150 6 72598594 to 72598609 15 + TSS region transcription start site region 57150
Retsat 6 72598628 to 72607488 8860 + protein coding gene retinol saturase (all trans retinol 13,14 reductase)
Gm45053 6 72603004 to 72605502 2498 - unclassified gene predicted gene 45053
Tssr57151 6 72606391 to 72606394 3 + TSS region transcription start site region 57151
Tgoln1 6 72608432 to 72617000 8568 - protein coding gene trans-golgi network protein
Gm20536 6 72609836 to 72616190 6354 + unclassified non-coding RNA gene predicted gene 20536
Tssr61472 6 72610251 to 72610255 4 - TSS region transcription start site region 61472
Tssr61473 6 72610436 to 72610449 13 - TSS region transcription start site region 61473
Tssr61474 6 72610510 to 72610532 22 - TSS region transcription start site region 61474
Tssr61475 6 72610592 to 72610600 8 - TSS region transcription start site region 61475
Tssr61476 6 72611016 to 72611037 21 - TSS region transcription start site region 61476
Tssr61477 6 72611396 to 72611408 12 - TSS region transcription start site region 61477
Cpgi17549 6 72616138 to 72617195 1057 CpG island CpG island 17549
Tssr61478 6 72616725 to 72616756 31 - TSS region transcription start site region 61478
Tssr57152 6 72616855 to 72616918 63 + TSS region transcription start site region 57152
Tcf7l1 6 72626371 to 72789045 162674 - protein coding gene transcription factor 7 like 1 (T cell specific, HMG box)
Tssr61479 6 72627007 to 72627024 17 - TSS region transcription start site region 61479
Tssr57153 6 72627529 to 72627552 23 + TSS region transcription start site region 57153
Tssr57154 6 72629284 to 72629304 20 + TSS region transcription start site region 57154
Gm15401 6 72629288 to 72637717 8429 + antisense lncRNA gene predicted gene 15401
Tssr61480 6 72630550 to 72630559 9 - TSS region transcription start site region 61480
Gm37969 6 72635147 to 72638555 3408 - unclassified gene predicted gene, 37969
Tssr57155 6 72636226 to 72636237 11 + TSS region transcription start site region 57155
Tssr57156 6 72636244 to 72636258 14 + TSS region transcription start site region 57156
Tssr57157 6 72636268 to 72636281 13 + TSS region transcription start site region 57157
Tssr57158 6 72636288 to 72636321 33 + TSS region transcription start site region 57158
Tssr57159 6 72636327 to 72636332 5 + TSS region transcription start site region 57159
Tssr57160 6 72636375 to 72636378 3 + TSS region transcription start site region 57160
Gm38114 6 72642854 to 72644085 1231 - unclassified gene predicted gene, 38114
Gm31391 6 72645556 to 72686530 40974 + lncRNA gene predicted gene, 31391
Gm38320 6 72652320 to 72653600 1280 + unclassified gene predicted gene, 38320
Gm31315 6 72686876 to 72698365 11489 - pseudogene predicted gene, 31315
Tssr61481 6 72690779 to 72690789 10 - TSS region transcription start site region 61481
Tssr57161 6 72699143 to 72699150 7 + TSS region transcription start site region 57161
Tssr57162 6 72699165 to 72699201 36 + TSS region transcription start site region 57162
Gm15402 6 72699214 to 72705090 5876 + antisense lncRNA gene predicted gene 15402
Tssr61482 6 72731038 to 72731042 4 - TSS region transcription start site region 61482
Cpgi17550 6 72740711 to 72740866 155 CpG island CpG island 17550
Gm31249 6 72741792 to 72750022 8230 + lncRNA gene predicted gene, 31249
Tssr57163 6 72744020 to 72744058 38 + TSS region transcription start site region 57163
Gm37736 6 72749113 to 72751914 2801 - unclassified gene predicted gene, 37736
Tssr61483 6 72771060 to 72771061 1 - TSS region transcription start site region 61483
Cpgi17551 6 72787808 to 72789731 1923 CpG island CpG island 17551
Tssr61484 6 72789040 to 72789061 21 - TSS region transcription start site region 61484
Tssr61485 6 72789191 to 72789238 47 - TSS region transcription start site region 61485
Tssr61486 6 72789240 to 72789262 22 - TSS region transcription start site region 61486
Cpgi17552 6 72795496 to 72795796 300 CpG island CpG island 17552
Cpgi17553 6 72824988 to 72825228 240 CpG island CpG island 17553
Tssr61487 6 72840990 to 72841001 11 - TSS region transcription start site region 61487
Kcmf1 6 72841114 to 72899979 58865 - protein coding gene potassium channel modulatory factor 1
Tssr61488 6 72842848 to 72842898 50 - TSS region transcription start site region 61488
Tssr61489 6 72851276 to 72851281 5 - TSS region transcription start site region 61489
Tssr57164 6 72854388 to 72854389 1 + TSS region transcription start site region 57164
6030456E01Rik 6 72883604 to 72885455 1851 unclassified gene RIKEN cDNA 6030456E01 gene
Tssr61490 6 72885425 to 72885429 4 - TSS region transcription start site region 61490
D530018E20Rik 6 72894962 to 72895919 957 - unclassified gene RIKEN cDNA D530018E20 gene
Cpgi17554 6 72898693 to 72900853 2160 CpG island CpG island 17554
Tssr57165 6 72898700 to 72898712 12 + TSS region transcription start site region 57165
Tssr61491 6 72899286 to 72899303 17 - TSS region transcription start site region 61491
Tssr61492 6 72899722 to 72899811 89 - TSS region transcription start site region 61492
Tssr61493 6 72899814 to 72899843 29 - TSS region transcription start site region 61493
Tssr61494 6 72899899 to 72899951 52 - TSS region transcription start site region 61494
Tssr61495 6 72899952 to 72899985 33 - TSS region transcription start site region 61495
Tssr57166 6 72900076 to 72900093 17 + TSS region transcription start site region 57166
Tssr61496 6 72900130 to 72900216 86 - TSS region transcription start site region 61496
Gm26640 6 72953236 to 72957247 4011 + lincRNA gene predicted gene, 26640
Tssr57167 6 72955103 to 72955128 25 + TSS region transcription start site region 57167
Tssr57168 6 72956689 to 72956709 20 + TSS region transcription start site region 57168
Cpgi17555 6 72956719 to 72956878 159 CpG island CpG island 17555
Tmsb10 6 72957347 to 72958748 1401 - protein coding gene thymosin, beta 10
Tssr61497 6 72957566 to 72957589 23 - TSS region transcription start site region 61497
Tssr61498 6 72957826 to 72957839 13 - TSS region transcription start site region 61498
Cpgi17556 6 72957851 to 72958859 1008 CpG island CpG island 17556
Tssr61499 6 72958078 to 72958089 11 - TSS region transcription start site region 61499
Tssr61500 6 72958097 to 72958244 147 - TSS region transcription start site region 61500
Tssr61501 6 72958399 to 72958411 12 - TSS region transcription start site region 61501
Tssr61502 6 72958423 to 72958429 6 - TSS region transcription start site region 61502
Tssr61503 6 72958434 to 72958446 12 - TSS region transcription start site region 61503
Tssr61504 6 72958450 to 72958453 3 - TSS region transcription start site region 61504
Tssr61505 6 72958465 to 72958496 31 - TSS region transcription start site region 61505
Tssr61506 6 72960725 to 72960747 22 - TSS region transcription start site region 61506
Tssr1892 6 72970479 to 72970482 3 + TSS region transcription start site region 1892
Gm18402 6 72982477 to 72983010 533 - pseudogene predicted gene, 18402
Tssr57169 6 72993553 to 72993577 24 + TSS region transcription start site region 57169
Tssr57170 6 72993588 to 72993623 35 + TSS region transcription start site region 57170
Gm31547 6 73007100 to 73010731 3631 + lncRNA gene predicted gene, 31547
Gm20560 6 73012043 to 73020360 8317 + antisense lncRNA gene predicted gene, 20560
Dnah6 6 73017606 to 73221651 204045 - protein coding gene dynein, axonemal, heavy chain 6
8430413B15Rik 6 73050645 to 73051172 527 unclassified gene RIKEN cDNA 8430413B15 gene
Tssr61507 6 73060288 to 73060309 21 - TSS region transcription start site region 61507
Cpgi17557 6 73087491 to 73087698 207 CpG island CpG island 17557
D6Mit71 6 73097137 to 73097278 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 71
Tssr61508 6 73138947 to 73138951 4 - TSS region transcription start site region 61508
Gm24533 6 73141485 to 73141680 195 - snoRNA gene predicted gene, 24533
Cpgi17558 6 73192665 to 73192896 231 CpG island CpG island 17558
Tssr61509 6 73221608 to 73221622 14 - TSS region transcription start site region 61509
Tssr61510 6 73221625 to 73221664 39 - TSS region transcription start site region 61510
Tssr61511 6 73221665 to 73221676 11 - TSS region transcription start site region 61511
Tssr61512 6 73221692 to 73221701 9 - TSS region transcription start site region 61512
Cpgi17559 6 73221698 to 73221903 205 CpG island CpG island 17559
Tssr61513 6 73221711 to 73221723 12 - TSS region transcription start site region 61513
Tssr57171 6 73223041 to 73223058 17 + TSS region transcription start site region 57171
Gm40377 6 73223050 to 73225064 2014 + lncRNA gene predicted gene, 40377
Cpgi17560 6 73248176 to 73249214 1038 CpG island CpG island 17560
Suclg1 6 73248505 to 73276907 28402 + protein coding gene succinate-CoA ligase, GDP-forming, alpha subunit
Tssr57172 6 73248577 to 73248588 11 + TSS region transcription start site region 57172
Tssr57173 6 73248633 to 73248695 62 + TSS region transcription start site region 57173
Gm38834 6 73248760 to 73254494 5734 + lncRNA gene predicted gene, 38834
Gm40378 6 73287603 to 73289836 2233 - protein coding gene predicted gene, 40378
Gm44475 6 73310218 to 73310641 423 - pseudogene predicted gene, 44475
D6Mit186 6 73387511 to 73387692 181 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 186
Gm24370 6 73392142 to 73392243 101 + miRNA gene predicted gene, 24370
Olfr210-ps1 6 73420317 to 73421218 901 - pseudogene olfactory receptor 210, pseudogene 1
Cpgi17561 6 73429533 to 73430069 536 CpG island CpG island 17561
1700065L07Rik 6 73436986 to 73471021 34035 - lincRNA gene RIKEN cDNA 1700065L07 gene
4931417E11Rik 6 73468573 to 73469667 1094 - protein coding gene RIKEN cDNA 4931417E11 gene
Tssr61514 6 73469466 to 73469473 7 - TSS region transcription start site region 61514
Tssr61515 6 73469510 to 73469521 11 - TSS region transcription start site region 61515
Tssr61516 6 73469577 to 73469647 70 - TSS region transcription start site region 61516
Tssr61517 6 73471064 to 73471075 11 - TSS region transcription start site region 61517
Gm4374 6 73528815 to 73529238 423 - pseudogene predicted gene 4374
Gm31747 6 73586109 to 73608673 22564 - lincRNA gene predicted gene, 31747
Tssr61518 6 73608667 to 73608675 8 - TSS region transcription start site region 61518
Tssr57174 6 73633098 to 73633105 7 + TSS region transcription start site region 57174
D6Mit245 6 73745001 to 73745123 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 245
Gm44225 6 73885664 to 73885849 185 - pseudogene predicted gene, 44225
Tssr61519 6 74025745 to 74025746 1 - TSS region transcription start site region 61519
Tssr57175 6 74050232 to 74050234 2 + TSS region transcription start site region 57175
D6Mit126 6 74055234 to 74055321 87 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 126
D6Mit320.1 6 74207306 to 74207421 115 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 320.1
D6Mit320 6 74207453 to 74207573 120 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 320
D6Mit358 6 74267639 to 74267756 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 358
Gm26179 6 74340950 to 74341081 131 + snoRNA gene predicted gene, 26179
Gm23924 6 74451797 to 74451904 107 - snRNA gene predicted gene, 23924
Gm22254 6 74505055 to 74505164 109 - miRNA gene predicted gene, 22254
Recrq9 6 134700000 to 73500000 -61200000 QTL recombination rate in male meiosis QTL 9