Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:70561294-71341302

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sxbq2 6 19912686 to 71322775 51410089 QTL SGC/Knj cross B6 QTL 2
Cia6c 6 44465871 to 71119467 26653596 QTL collagen induced arthritis QTL 6c
Igk 6 67555636 to 70726754 3171118 + complex/cluster/region immunoglobulin kappa chain complex
Tssr56939 6 70572584 to 70572604 20 + TSS region transcription start site region 56939
Igkv3-10 6 70572633 to 70573230 597 + gene segment immunoglobulin kappa variable 3-10
Igkv3-9 6 70588189 to 70588777 588 + gene segment immunoglobulin kappa variable 3-9
Igkv3-8 6 70588875 to 70589452 577 + pseudogenic gene segment immunoglobulin kappa variable 3-8
Tssr56940 6 70607391 to 70607414 23 + TSS region transcription start site region 56940
Igkv3-7 6 70607437 to 70608036 599 + gene segment immunoglobulin kappa variable 3-7
Tssr56941 6 70642363 to 70642385 22 + TSS region transcription start site region 56941
Igkv3-6 6 70642405 to 70642979 574 + pseudogenic gene segment immunoglobulin kappa variable 3-6
Tssr56942 6 70663249 to 70663256 7 + TSS region transcription start site region 56942
Igkv3-5 6 70663298 to 70663895 597 + gene segment immunoglobulin kappa chain variable 3-5
Tssr56943 6 70671759 to 70671787 28 + TSS region transcription start site region 56943
Igkv3-4 6 70671789 to 70672377 588 + gene segment immunoglobulin kappa variable 3-4
Igkv3-3 6 70686946 to 70687534 588 + gene segment immunoglobulin kappa variable 3-3
Tssr56944 6 70698418 to 70698427 9 + TSS region transcription start site region 56944
Tssr56945 6 70698432 to 70698450 18 + TSS region transcription start site region 56945
Igkv3-2 6 70698468 to 70699067 599 + gene segment immunoglobulin kappa variable 3-2
Tssr56946 6 70703531 to 70703555 24 + TSS region transcription start site region 56946
Igkv3-1 6 70703578 to 70704177 599 + gene segment immunoglobulin kappa variable 3-1
Tssr61319 6 70709897 to 70709915 18 - TSS region transcription start site region 61319
Gm46961 6 70713079 to 70719278 6199 - lncRNA gene predicted gene, 46961
Tssr61320 6 70718865 to 70718889 24 - TSS region transcription start site region 61320
Tssr56947 6 70718981 to 70719015 34 + TSS region transcription start site region 56947
Tssr56948 6 70719202 to 70719215 13 + TSS region transcription start site region 56948
Tssr56949 6 70721710 to 70721716 6 + TSS region transcription start site region 56949
Tssr56950 6 70722491 to 70722545 54 + TSS region transcription start site region 56950
Tssr56951 6 70722549 to 70722571 22 + TSS region transcription start site region 56951
Igkj1 6 70722562 to 70722599 37 + gene segment immunoglobulin kappa joining 1
Tssr56952 6 70722838 to 70722851 13 + TSS region transcription start site region 56952
Igkj2 6 70722916 to 70722954 38 + gene segment immunoglobulin kappa joining 2
Igkj3 6 70723223 to 70723260 37 + gene segment immunoglobulin kappa joining 3
Tssr56953 6 70723538 to 70723547 9 + TSS region transcription start site region 56953
Igkj4 6 70723548 to 70723585 37 + gene segment immunoglobulin kappa joining 4
Tssr56954 6 70723660 to 70723679 19 + TSS region transcription start site region 56954
Tssr56955 6 70723874 to 70723900 26 + TSS region transcription start site region 56955
Igkj5 6 70723886 to 70723923 37 + gene segment immunoglobulin kappa joining 5
Tssr56956 6 70725808 to 70725833 25 + TSS region transcription start site region 56956
Tssr56957 6 70726430 to 70726472 42 + TSS region transcription start site region 56957
Igkc 6 70726435 to 70726754 319 + gene segment immunoglobulin kappa constant
Tssr56958 6 70726477 to 70726488 11 + TSS region transcription start site region 56958
Tssr61321 6 70726482 to 70726509 27 - TSS region transcription start site region 61321
Tssr56959 6 70726495 to 70726506 11 + TSS region transcription start site region 56959
Tssr56960 6 70726518 to 70726521 3 + TSS region transcription start site region 56960
Tssr56961 6 70726532 to 70726537 5 + TSS region transcription start site region 56961
Tssr56962 6 70726540 to 70726549 9 + TSS region transcription start site region 56962
Tssr56963 6 70726589 to 70726596 7 + TSS region transcription start site region 56963
Tssr56964 6 70726604 to 70726607 3 + TSS region transcription start site region 56964
Tssr56965 6 70726610 to 70726619 9 + TSS region transcription start site region 56965
Tssr56966 6 70726621 to 70726627 6 + TSS region transcription start site region 56966
Tssr56967 6 70726636 to 70726647 11 + TSS region transcription start site region 56967
Tssr61322 6 70726647 to 70726657 10 - TSS region transcription start site region 61322
Tssr56968 6 70726660 to 70726677 17 + TSS region transcription start site region 56968
Tssr61323 6 70726662 to 70726738 76 - TSS region transcription start site region 61323
Tssr56969 6 70726696 to 70726701 5 + TSS region transcription start site region 56969
Tssr56970 6 70726709 to 70726720 11 + TSS region transcription start site region 56970
Tssr56971 6 70726729 to 70726732 3 + TSS region transcription start site region 56971
Tssr61324 6 70726752 to 70726815 63 - TSS region transcription start site region 61324
Tssr56972 6 70726755 to 70726791 36 + TSS region transcription start site region 56972
Tssr56973 6 70726793 to 70726802 9 + TSS region transcription start site region 56973
Tssr61325 6 70726818 to 70726848 30 - TSS region transcription start site region 61325
Tssr56974 6 70726825 to 70726832 7 + TSS region transcription start site region 56974
Tssr1880 6 70726850 to 70726851 1 + TSS region transcription start site region 1880
Tssr61326 6 70726853 to 70726861 8 - TSS region transcription start site region 61326
Tssr56975 6 70726858 to 70726869 11 + TSS region transcription start site region 56975
Tssr61327 6 70726867 to 70726887 20 - TSS region transcription start site region 61327
Tssr61328 6 70726958 to 70726965 7 - TSS region transcription start site region 61328
Gm30211 6 70729213 to 70750527 21314 + lincRNA gene predicted gene, 30211
Tssr61329 6 70744006 to 70744017 11 - TSS region transcription start site region 61329
D6Nds6 6 70744792 to 70744992 200 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 6
Rpia 6 70765720 to 70792175 26455 - protein coding gene ribose 5-phosphate isomerase A
Tssr61330 6 70766408 to 70766412 4 - TSS region transcription start site region 61330
Tssr61331 6 70773858 to 70773895 37 - TSS region transcription start site region 61331
Tssr61332 6 70777219 to 70777224 5 - TSS region transcription start site region 61332
Cpgi17513 6 70791474 to 70792404 930 CpG island CpG island 17513
Tssr61333 6 70791997 to 70792017 20 - TSS region transcription start site region 61333
Tssr61334 6 70792020 to 70792030 10 - TSS region transcription start site region 61334
Tssr61335 6 70792036 to 70792049 13 - TSS region transcription start site region 61335
Tssr61336 6 70792155 to 70792199 44 - TSS region transcription start site region 61336
Gm30331 6 70806991 to 70814791 7800 - lncRNA gene predicted gene, 30331
Cpgi17514 6 70824609 to 70824904 295 CpG island CpG island 17514
Tssr56976 6 70824695 to 70824744 49 + TSS region transcription start site region 56976
Cpgi17515 6 70844144 to 70845317 1173 CpG island CpG island 17515
Tssr56977 6 70844499 to 70844579 80 + TSS region transcription start site region 56977
Eif2ak3 6 70844515 to 70905245 60730 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 3
Tssr56978 6 70844583 to 70844594 11 + TSS region transcription start site region 56978
Tssr56979 6 70849462 to 70849464 2 + TSS region transcription start site region 56979
Gm23346 6 70855444 to 70855579 135 + snoRNA gene predicted gene, 23346
Gm43292 6 70883354 to 70885802 2448 - unclassified gene predicted gene 43292
Tssr56980 6 70903708 to 70903715 7 + TSS region transcription start site region 56980
Tex37 6 70913087 to 70918927 5840 - protein coding gene testis expressed 37
Tssr61337 6 70918902 to 70918908 6 - TSS region transcription start site region 61337
Tssr61338 6 70918915 to 70918935 20 - TSS region transcription start site region 61338
Tssr61339 6 70951294 to 70951302 8 - TSS region transcription start site region 61339
Cpgi17516 6 70956179 to 70957401 1222 CpG island CpG island 17516
Tssr56981 6 70956456 to 70956460 4 + TSS region transcription start site region 56981
Foxi3 6 70956606 to 70961066 4460 + protein coding gene forkhead box I3
Tssr56982 6 70965917 to 70965941 24 + TSS region transcription start site region 56982
Tssr56983 6 70968802 to 70968804 2 + TSS region transcription start site region 56983
Cpgi17517 6 71012733 to 71013487 754 CpG island CpG island 17517
Gm23485 6 71039579 to 71039733 154 - snRNA gene predicted gene, 23485
Cpgi17518 6 71048517 to 71048820 303 CpG island CpG island 17518
Cpgi17519 6 71048988 to 71049152 164 CpG island CpG island 17519
Gm38826 6 71087777 to 71106633 18856 - lncRNA gene predicted gene, 38826
Gm43906 6 71105606 to 71106511 905 - unclassified gene predicted gene, 43906
D6Mit17 6 71119218 to 71119467 249 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 17
Rpl34-ps1 6 71124610 to 71124963 353 + pseudogene ribosomal protein L34, pseudogene 1
Thnsl2 6 71128166 to 71144380 16214 - protein coding gene threonine synthase-like 2 (bacterial)
Cpgi17520 6 71143748 to 71144444 696 CpG island CpG island 17520
Tssr61340 6 71144340 to 71144356 16 - TSS region transcription start site region 61340
Tssr61341 6 71144363 to 71144381 18 - TSS region transcription start site region 61341
Gm30391 6 71148589 to 71153688 5099 + lncRNA gene predicted gene, 30391
Gm38827 6 71154105 to 71157968 3863 + lncRNA gene predicted gene, 38827
Gm44427 6 71164799 to 71166119 1320 + lincRNA gene predicted gene, 44427
Tssr56984 6 71199871 to 71199888 17 + TSS region transcription start site region 56984
Fabp1 6 71199888 to 71205023 5135 + protein coding gene fatty acid binding protein 1, liver
Tssr56985 6 71201600 to 71201610 10 + TSS region transcription start site region 56985
Tssr61342 6 71201668 to 71201691 23 - TSS region transcription start site region 61342
Tssr61343 6 71201706 to 71201714 8 - TSS region transcription start site region 61343
D6Mit244 6 71203212 to 71203339 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 244
Tssr56986 6 71204900 to 71204932 32 + TSS region transcription start site region 56986
Smyd1 6 71213940 to 71262281 48341 - protein coding gene SET and MYND domain containing 1
Tssr56987 6 71224475 to 71224481 6 + TSS region transcription start site region 56987
Tssr61344 6 71225458 to 71225474 16 - TSS region transcription start site region 61344
Cpgi17521 6 71239462 to 71239668 206 CpG island CpG island 17521
Tssr61345 6 71262237 to 71262255 18 - TSS region transcription start site region 61345
Tssr61346 6 71262484 to 71262496 12 - TSS region transcription start site region 61346
Tssr61347 6 71262540 to 71262584 44 - TSS region transcription start site region 61347
Tssr61348 6 71270714 to 71270726 12 - TSS region transcription start site region 61348
Tssr61349 6 71270731 to 71270748 17 - TSS region transcription start site region 61349
Tssr56988 6 71270874 to 71270929 55 + TSS region transcription start site region 56988
Cpgi17522 6 71271402 to 71272318 916 CpG island CpG island 17522
Tssr61350 6 71271481 to 71271512 31 - TSS region transcription start site region 61350
Tssr56989 6 71271575 to 71271606 31 + TSS region transcription start site region 56989
Mir8112 6 71271671 to 71271801 130 + miRNA gene microRNA 8112
Tssr56990 6 71271672 to 71271743 71 + TSS region transcription start site region 56990
Krcc1 6 71271677 to 71285319 13642 + protein coding gene lysine-rich coiled-coil 1
Gm44321 6 71276494 to 71279348 2854 + unclassified gene predicted gene, 44321
Tssr56991 6 71284097 to 71284106 9 + TSS region transcription start site region 56991
Tssr56992 6 71284298 to 71284319 21 + TSS region transcription start site region 56992
Tssr56993 6 71284351 to 71284432 81 + TSS region transcription start site region 56993
Tssr56994 6 71284453 to 71284465 12 + TSS region transcription start site region 56994
Gm1070 6 71293765 to 71302880 9115 + lincRNA gene predicted gene 1070
Gm38828 6 71312209 to 71322682 10473 - lncRNA gene predicted gene, 38828
Tssr61351 6 71322200 to 71322238 38 - TSS region transcription start site region 61351
Tssr61352 6 71322549 to 71322570 21 - TSS region transcription start site region 61352
D6Mit16 6 71322621 to 71322775 154 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 16
Bbaa20 6 71322621 to 93464093 22141472 QTL B.burgdorferi-associated arthritis 20
Etax6 6 71322621 to 86275719 14953098 QTL ethanol induced ataxia 6
Tssr56995 6 71322754 to 71322765 11 + TSS region transcription start site region 56995
Tssr56996 6 71322775 to 71322844 69 + TSS region transcription start site region 56996
Cd8b1 6 71322812 to 71337451 14639 + protein coding gene CD8 antigen, beta chain 1
Tssr1881 6 71325426 to 71325436 10 + TSS region transcription start site region 1881
Tssr56997 6 71325454 to 71325463 9 + TSS region transcription start site region 56997
Tssr56998 6 71325499 to 71325519 20 + TSS region transcription start site region 56998
Tssr56999 6 71325837 to 71325842 5 + TSS region transcription start site region 56999
Tssr57000 6 71325999 to 71326017 18 + TSS region transcription start site region 57000
Tssr57001 6 71329254 to 71329265 11 + TSS region transcription start site region 57001
Tssr57002 6 71329754 to 71329775 21 + TSS region transcription start site region 57002
Tssr57003 6 71334108 to 71334121 13 + TSS region transcription start site region 57003
D6Mit124 6 71334860 to 71335049 189 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 124
Tssr57004 6 71338652 to 71338670 18 + TSS region transcription start site region 57004
Gm44110 6 71338886 to 71339535 649 - lincRNA gene predicted gene, 44110
Tssr61353 6 71341230 to 71341268 38 - TSS region transcription start site region 61353
Tssr61354 6 71341293 to 71341303 10 - TSS region transcription start site region 61354