Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:68848051-72068055

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503 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sxbq2 6 19912686 to 71322775 51410089 QTL SGC/Knj cross B6 QTL 2
Trbv4c2 6 40891296 to 71379171 30487875 QTL T cell receptor beta variable 4, control 2
Cia6c 6 44465871 to 71119467 26653596 QTL collagen induced arthritis QTL 6c
Igk 6 67555636 to 70726754 3171118 + complex/cluster/region immunoglobulin kappa chain complex
Igkv1-88 6 68862265 to 68863031 766 - gene segment immunoglobulin kappa chain variable 1-88
Tssr61269 6 68863041 to 68863048 7 - TSS region transcription start site region 61269
Gm42539 6 68875428 to 68875823 395 - pseudogenic gene segment predicted gene 42539
Gm42543 6 68880178 to 68880674 496 - gene segment predicted gene 42543
Tssr61270 6 68880693 to 68880713 20 - TSS region transcription start site region 61270
Gm42542 6 68893580 to 68893982 402 - pseudogenic gene segment predicted gene 42542
Igkv13-87 6 68902981 to 68903266 285 + pseudogenic gene segment immunoglobulin kappa variable 13-87
Gm43710 6 68909406 to 68909857 451 + pseudogene predicted gene 43710
Igkv4-86 6 68910411 to 68910938 527 - gene segment immunoglobulin kappa variable 4-86
Tssr61271 6 68910443 to 68910457 14 - TSS region transcription start site region 61271
Tssr61272 6 68910948 to 68910962 14 - TSS region transcription start site region 61272
Tssr61273 6 68910980 to 68910998 18 - TSS region transcription start site region 61273
Igkv13-85 6 68930269 to 68930734 465 - gene segment immunoglobulin kappa chain variable 13-85
Tssr61274 6 68930757 to 68930781 24 - TSS region transcription start site region 61274
Tssr56931 6 68939556 to 68939585 29 + TSS region transcription start site region 56931
Igkv13-84 6 68939602 to 68940067 465 + gene segment immunoglobulin kappa chain variable 13-84
Igkv4-83 6 68961378 to 68962007 629 - pseudogenic gene segment immunoglobulin kappa chain variable 4-83
Igkv13-82 6 68979198 to 68979663 465 + pseudogenic gene segment immunoglobulin kappa chain variable 13-82
Tssr56932 6 68980360 to 68980370 10 + TSS region transcription start site region 56932
Tssr61275 6 68980952 to 68980956 4 - TSS region transcription start site region 61275
Igkv4-81 6 68990758 to 68991294 536 - gene segment immunoglobulin kappa variable 4-81
Tssr61276 6 68991323 to 68991347 24 - TSS region transcription start site region 61276
Igkv13-80-1 6 69009143 to 69009513 370 + pseudogenic gene segment immunoglobulin kappa chain variable 13-80-1
Igkv4-80 6 69016558 to 69017080 522 - gene segment immunoglobulin kappa variable 4-80
Tssr61277 6 69017128 to 69017135 7 - TSS region transcription start site region 61277
Igkv4-79 6 69042972 to 69043505 533 - gene segment immunoglobulin kappa variable 4-79
Tssr61278 6 69043534 to 69043556 22 - TSS region transcription start site region 61278
Igkv13-78-1 6 69051617 to 69051816 199 + pseudogenic gene segment immunoglobulin kappa variable 13-78-1
Igkv4-78 6 69059690 to 69060224 534 - gene segment immunoglobulin kappa variable 4-78
Gm43583 6 69086185 to 69086487 302 + pseudogenic gene segment predicted gene 43583
Igkv4-77 6 69110904 to 69111432 528 - pseudogenic gene segment immunoglobulin kappa variable 4-77
Igkv13-76 6 69137866 to 69138332 466 + pseudogenic gene segment immunoglobulin kappa chain variable 13-76
Igkv4-75 6 69156118 to 69156659 541 - pseudogenic gene segment immunoglobulin kappa chain variable 4-75
Igkv13-74-1 6 69177423 to 69177787 364 + pseudogenic gene segment immunoglobulin kappa chain variable 13-74-1
Igkv4-74 6 69184826 to 69185361 535 - gene segment immunoglobulin kappa variable 4-74
Tssr61279 6 69185408 to 69185416 8 - TSS region transcription start site region 61279
Igkv13-73-1 6 69190083 to 69190282 199 + pseudogenic gene segment immunoglobulin kappa chain variable 13-73-1
Igkv4-73 6 69197583 to 69198116 533 - gene segment immunoglobulin kappa variable 4-73
Tssr61280 6 69198145 to 69198165 20 - TSS region transcription start site region 61280
Igkv4-72 6 69226854 to 69227383 529 - gene segment immunoglobulin kappa chain variable 4-72
Igkv13-71-1 6 69235927 to 69236158 231 + pseudogenic gene segment immunoglobulin kappa chain variable 13-71-1
Igkv4-71 6 69243160 to 69243688 528 - gene segment immunoglobulin kappa chain variable 4-71
Tssr61281 6 69243717 to 69243741 24 - TSS region transcription start site region 61281
Igkv4-70 6 69267888 to 69268412 524 - gene segment immunoglobulin kappa chain variable 4-70
Igkv4-69 6 69283794 to 69284319 525 - gene segment immunoglobulin kappa variable 4-69
Tssr1875 6 69284334 to 69284350 16 - TSS region transcription start site region 1875
Igkv4-68 6 69304834 to 69305363 529 - gene segment immunoglobulin kappa variable 4-68
Igkv12-67 6 69324177 to 69324646 469 - pseudogenic gene segment immunoglobulin kappa chain variable 12-67
Rprl1 6 69326937 to 69327174 237 - RNase P RNA gene ribonuclease P RNA-like 1
Igkv12-66 6 69334604 to 69335076 472 - pseudogenic gene segment immunoglobulin kappa chain variable 12-66
Igkv4-65 6 69342472 to 69343004 532 - pseudogenic gene segment immunoglobulin kappa chain variable 4-65
Igkv13-64 6 69362725 to 69363187 462 + pseudogenic gene segment immunoglobulin kappa chain variable 13-64
Igkv4-63 6 69377944 to 69378472 528 - gene segment immunoglobulin kappa variable 4-63
Tssr61282 6 69378517 to 69378527 10 - TSS region transcription start site region 61282
Igkv13-62-1 6 69392439 to 69392815 376 + pseudogenic gene segment immunoglobulin kappa chain variable 13-62-1
Igkv4-62 6 69399812 to 69400344 532 - gene segment immunoglobulin kappa variable 4-62
Igkv13-61-1 6 69409499 to 69409875 376 + pseudogenic gene segment immunoglobulin kappa chain variable 13-61-1
Igkv4-61 6 69416893 to 69417425 532 - gene segment immunoglobulin kappa chain variable 4-61
Tssr61283 6 69417441 to 69417456 15 - TSS region transcription start site region 61283
Igkv4-59 6 69438218 to 69438741 523 - gene segment immunoglobulin kappa variable 4-59
Igkv4-60 6 69463288 to 69463725 437 - gene segment immunoglobulin kappa variable 4-60
Igkv4-58 6 69500254 to 69500758 504 - gene segment immunoglobulin kappa variable 4-58
Tssr61284 6 69500815 to 69500841 26 - TSS region transcription start site region 61284
Tssr56933 6 69516339 to 69516341 2 + TSS region transcription start site region 56933
Rn7s6 6 69516339 to 69516629 290 + SRP RNA gene 7S RNA 6
Gm47304 6 69516481 to 69516550 69 + miRNA gene predicted gene, 47304
Igkv13-57-2 6 69523739 to 69524016 277 + pseudogenic gene segment immunoglobulin kappa variable 13-57-2
Igkv4-57-1 6 69544368 to 69544892 524 - gene segment immunoglobulin kappa variable 4-57-1
Tssr61285 6 69544940 to 69544945 5 - TSS region transcription start site region 61285
Igkv13-57-1 6 69569737 to 69570109 372 + pseudogenic gene segment immunoglobulin kappa chain variable 13-57-1
Igkv4-57 6 69575975 to 69576500 525 - gene segment immunoglobulin kappa variable 4-57
Tssr61286 6 69576515 to 69576522 7 - TSS region transcription start site region 61286
Igkv13-56-1 6 69581244 to 69581452 208 + pseudogenic gene segment immunoglobulin kappa chain variable 13-56-1
Igkv4-56 6 69587295 to 69587810 515 - pseudogenic gene segment immunoglobulin kappa chain variable 4-56
Tssr1876 6 69587838 to 69587867 29 - TSS region transcription start site region 1876
Igkv13-55-1 6 69599886 to 69600262 376 + pseudogenic gene segment immunoglobulin kappa chain variable 13-55-1
Igkv4-55 6 69607275 to 69607801 526 - gene segment immunoglobulin kappa variable 4-55
Tssr61287 6 69607432 to 69607443 11 - TSS region transcription start site region 61287
Tssr61288 6 69607831 to 69607856 25 - TSS region transcription start site region 61288
Igkv13-54-1 6 69617048 to 69617423 375 + pseudogenic gene segment immunoglobulin kappa chain variable 13-54-1
Igkv4-54 6 69631648 to 69632178 530 - gene segment immunoglobulin kappa chain variable 4-54
Tssr1877 6 69632195 to 69632232 37 - TSS region transcription start site region 1877
Igkv4-53 6 69648824 to 69649354 530 - gene segment immunoglobulin kappa variable 4-53
Tssr61289 6 69649356 to 69649387 31 - TSS region transcription start site region 61289
Gm42606 6 69661094 to 69661468 374 + pseudogenic gene segment predicted gene 42606
Igkv4-51 6 69681406 to 69681939 533 - gene segment immunoglobulin kappa chain variable 4-51
Gm42958 6 69693295 to 69693612 317 + pseudogenic gene segment predicted gene 42958
Igkv4-50 6 69700767 to 69701287 520 - gene segment immunoglobulin kappa variable 4-50
Tssr61290 6 69701331 to 69701344 13 - TSS region transcription start site region 61290
Igkv12-49 6 69716562 to 69716956 394 - pseudogenic gene segment immunoglobulin kappa chain variable 12-49
Igkv5-48 6 69726573 to 69727125 552 - gene segment immunoglobulin kappa variable 5-48
Tssr61291 6 69727148 to 69727163 15 - TSS region transcription start site region 61291
Tssr61292 6 69727180 to 69727184 4 - TSS region transcription start site region 61292
Igkv12-47 6 69750854 to 69751310 456 - pseudogenic gene segment immunoglobulin kappa variable 12-47
Tssr61293 6 69751334 to 69751348 14 - TSS region transcription start site region 61293
Igkv12-46 6 69764523 to 69764992 469 - gene segment immunoglobulin kappa variable 12-46
Tssr61294 6 69764663 to 69764689 26 - TSS region transcription start site region 61294
Tssr61295 6 69765009 to 69765051 42 - TSS region transcription start site region 61295
Igkv5-45 6 69775750 to 69776306 556 - gene segment immunoglobulin kappa chain variable 5-45
Tssr61296 6 69776333 to 69776342 9 - TSS region transcription start site region 61296
Igkv12-44 6 69814631 to 69815100 469 - gene segment immunoglobulin kappa variable 12-44
Tssr61297 6 69815123 to 69815143 20 - TSS region transcription start site region 61297
Igkv5-43 6 69823355 to 69823911 556 - gene segment immunoglobulin kappa chain variable 5-43
Tssr61298 6 69823939 to 69823971 32 - TSS region transcription start site region 61298
Igkv12-42 6 69834792 to 69835241 449 - pseudogenic gene segment immunoglobulin kappa chain variable 12-42
Tssr61299 6 69835269 to 69835274 5 - TSS region transcription start site region 61299
Igkv12-41 6 69858420 to 69858884 464 - gene segment immunoglobulin kappa chain variable 12-41
Tssr61300 6 69858902 to 69858932 30 - TSS region transcription start site region 61300
Igkv5-40-1 6 69868627 to 69869193 566 - pseudogenic gene segment immunoglobulin kappa chain variable 5-40-1
Tssr1878 6 69869221 to 69869225 4 - TSS region transcription start site region 1878
Igkv12-40 6 69879350 to 69879819 469 - pseudogenic gene segment immunoglobulin kappa chain variable 12-40
Igkv5-39 6 69900424 to 69900977 553 - gene segment immunoglobulin kappa variable 5-39
Tssr61301 6 69900658 to 69900665 7 - TSS region transcription start site region 61301
Tssr61302 6 69901000 to 69901017 17 - TSS region transcription start site region 61302
Tssr61303 6 69901122 to 69901132 10 - TSS region transcription start site region 61303
Gm43220 6 69927621 to 69927902 281 - pseudogenic gene segment predicted gene 43220
Igkv12-38 6 69943186 to 69943648 462 - gene segment immunoglobulin kappa chain variable 12-38
Tssr61304 6 69943688 to 69943700 12 - TSS region transcription start site region 61304
Igkv5-37 6 69963312 to 69963861 549 - gene segment immunoglobulin kappa variable 5-37
Tssr61305 6 69963881 to 69963897 16 - TSS region transcription start site region 61305
Igkv18-36 6 69992465 to 69992977 512 - gene segment immunoglobulin kappa chain variable 18-36
Tssr61306 6 69992993 to 69993009 16 - TSS region transcription start site region 61306
Igkv1-35 6 70010949 to 70011673 724 - gene segment immunoglobulin kappa variable 1-35
Gm23694 6 70027982 to 70028091 109 - miRNA gene predicted gene, 23694
Tssr1879 6 70031683 to 70031688 5 - TSS region transcription start site region 1879
Gm43586 6 70040338 to 70040647 309 - pseudogenic gene segment predicted gene 43586
Igkv8-34 6 70044112 to 70044678 566 - gene segment immunoglobulin kappa variable 8-34
Igkv7-33 6 70058632 to 70059199 567 - gene segment immunoglobulin kappa chain variable 7-33
Tssr61307 6 70059231 to 70059236 5 - TSS region transcription start site region 61307
Igkv6-32 6 70074024 to 70074584 560 - gene segment immunoglobulin kappa variable 6-32
Tssr61308 6 70074602 to 70074621 19 - TSS region transcription start site region 61308
D6Mit96 6 70075269 to 70075371 102 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 96
Igkv8-31 6 70105860 to 70106179 319 - pseudogenic gene segment immunoglobulin kappa chain variable 8-31
Igkv8-30 6 70117061 to 70117617 556 - gene segment immunoglobulin kappa chain variable 8-30
Tssr61309 6 70117631 to 70117657 26 - TSS region transcription start site region 61309
Gm42818 6 70129652 to 70130638 986 + pseudogene predicted gene 42818
Amd-ps2 6 70130676 to 70132505 1829 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 2
Igkv6-29 6 70138462 to 70139082 620 - gene segment immunoglobulin kappa chain variable 6-29
Igkv8-28 6 70143593 to 70144161 568 - gene segment immunoglobulin kappa variable 8-28
Gm24096 6 70147936 to 70148045 109 - miRNA gene predicted gene, 24096
Igkv8-27 6 70171809 to 70172270 461 - gene segment immunoglobulin kappa chain variable 8-27
Tssr61310 6 70172289 to 70172306 17 - TSS region transcription start site region 61310
Igkv8-26 6 70193228 to 70193797 569 + gene segment immunoglobulin kappa variable 8-26
Gm8828 6 70209552 to 70213767 4215 - pseudogene predicted gene 8828
Tssr56934 6 70215401 to 70215404 3 + TSS region transcription start site region 56934
Igkv6-25 6 70215433 to 70215957 524 + gene segment immunoglobulin kappa chain variable 6-25
Igkv8-24 6 70216858 to 70217421 563 - gene segment immunoglobulin kappa chain variable 8-24
Tssr61311 6 70217449 to 70217452 3 - TSS region transcription start site region 61311
Gm46962 6 70218846 to 70220704 1858 - lncRNA gene predicted gene, 46962
Igkv8-23-1 6 70240427 to 70240710 283 + gene segment immunoglobulin kappa variable 8-23-1
Gm43218 6 70240427 to 70240972 545 - gene segment predicted gene 43218
Igkv6-23 6 70260409 to 70260933 524 - gene segment immunoglobulin kappa variable 6-23
Tssr61312 6 70260959 to 70260964 5 - TSS region transcription start site region 61312
Gm8836 6 70262565 to 70263912 1347 + pseudogene predicted gene 8836
Gm11065 6 70295177 to 70295406 229 + pseudogene predicted gene 11065
Igkv8-22 6 70297554 to 70298119 565 - pseudogenic gene segment immunoglobulin kappa chain variable 8-22
Igkv8-21 6 70314895 to 70315452 557 - gene segment immunoglobulin kappa variable 8-21
Tssr61313 6 70315467 to 70315473 6 - TSS region transcription start site region 61313
Amd-ps5 6 70327036 to 70328024 988 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 5
Igkv6-20 6 70335841 to 70336479 638 - gene segment immunoglobulin kappa variable 6-20
Igkv8-19 6 70340876 to 70341448 572 - gene segment immunoglobulin kappa variable 8-19
Igkv8-18 6 70355877 to 70356445 568 + gene segment immunoglobulin kappa variable 8-18
Gm8848 6 70368458 to 70369800 1342 - pseudogene predicted gene 8848
Tssr56935 6 70371432 to 70371446 14 + TSS region transcription start site region 56935
Igkv6-17 6 70371469 to 70371993 524 + gene segment immunoglobulin kappa variable 6-17
Tssr61314 6 70372627 to 70372635 8 - TSS region transcription start site region 61314
Igkv8-16 6 70386672 to 70387238 566 - gene segment immunoglobulin kappa variable 8-16
Gm42667 6 70405701 to 70405934 233 - pseudogenic gene segment predicted gene 42667
Igkv6-15 6 70406469 to 70406992 523 - gene segment immunoglobulin kappa variable 6-15
Tssr61315 6 70407018 to 70407023 5 - TSS region transcription start site region 61315
Gm8853 6 70408631 to 70409974 1343 + pseudogene predicted gene 8853
Gm10360 6 70424162 to 70424433 271 + pseudogenic gene segment predicted gene 10360
Gm6157 6 70428929 to 70430825 1896 - pseudogene predicted gene 6157
Tssr61316 6 70429968 to 70429981 13 - TSS region transcription start site region 61316
Igkv6-14 6 70434952 to 70435476 524 - gene segment immunoglobulin kappa variable 6-14
Tssr61317 6 70435503 to 70435508 5 - TSS region transcription start site region 61317
Gm8862 6 70437111 to 70438456 1345 + pseudogene predicted gene 8862
Igkv6-13 6 70457503 to 70458036 533 - gene segment immunoglobulin kappa variable 6-13
Tssr61318 6 70458051 to 70458055 4 - TSS region transcription start site region 61318
Gm8872 6 70459665 to 70461005 1340 + pseudogene predicted gene 8872
Gm42720 6 70493364 to 70493663 299 - pseudogenic gene segment predicted gene 42720
Gm42773 6 70495383 to 70495530 147 + pseudogene predicted gene 42773
Igkv3-12-1 6 70497681 to 70498273 592 - pseudogenic gene segment immunoglobulin kappa chain variable 3-12-1
Tssr56936 6 70518201 to 70518209 8 + TSS region transcription start site region 56936
Tssr56937 6 70518240 to 70518252 12 + TSS region transcription start site region 56937
Igkv3-12 6 70518250 to 70518849 599 + gene segment immunoglobulin kappa variable 3-12
Tssr56938 6 70532942 to 70532944 2 + TSS region transcription start site region 56938
Igkv3-11 6 70553239 to 70553862 623 + pseudogenic gene segment immunoglobulin kappa variable 3-11
Tssr56939 6 70572584 to 70572604 20 + TSS region transcription start site region 56939
Igkv3-10 6 70572633 to 70573230 597 + gene segment immunoglobulin kappa variable 3-10
Igkv3-9 6 70588189 to 70588777 588 + gene segment immunoglobulin kappa variable 3-9
Igkv3-8 6 70588875 to 70589452 577 + pseudogenic gene segment immunoglobulin kappa variable 3-8
Tssr56940 6 70607391 to 70607414 23 + TSS region transcription start site region 56940
Igkv3-7 6 70607437 to 70608036 599 + gene segment immunoglobulin kappa variable 3-7
Tssr56941 6 70642363 to 70642385 22 + TSS region transcription start site region 56941
Igkv3-6 6 70642405 to 70642979 574 + pseudogenic gene segment immunoglobulin kappa variable 3-6