Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:67254730-67814745

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17509 6 67266223 to 67268214 1991 CpG island CpG island 17509
Serbp1 6 67266979 to 67289302 22323 + protein coding gene serpine1 mRNA binding protein 1
Tssr56889 6 67266987 to 67267021 34 + TSS region transcription start site region 56889
Tssr61241 6 67267397 to 67267425 28 - TSS region transcription start site region 61241
Tssr56890 6 67270439 to 67270443 4 + TSS region transcription start site region 56890
Tssr56891 6 67271193 to 67271230 37 + TSS region transcription start site region 56891
Tssr61242 6 67271215 to 67271288 73 - TSS region transcription start site region 61242
Tssr56892 6 67271257 to 67271278 21 + TSS region transcription start site region 56892
Tssr56893 6 67271908 to 67271920 12 + TSS region transcription start site region 56893
Tssr56894 6 67271927 to 67271956 29 + TSS region transcription start site region 56894
Tssr56895 6 67271957 to 67271982 25 + TSS region transcription start site region 56895
Tssr61243 6 67271966 to 67271983 17 - TSS region transcription start site region 61243
Tssr56896 6 67272159 to 67272196 37 + TSS region transcription start site region 56896
Tssr56897 6 67272888 to 67272913 25 + TSS region transcription start site region 56897
Tssr56898 6 67277758 to 67277807 49 + TSS region transcription start site region 56898
Tssr56899 6 67277812 to 67277833 21 + TSS region transcription start site region 56899
Tssr56900 6 67278217 to 67278220 3 + TSS region transcription start site region 56900
Tssr56901 6 67282087 to 67282091 4 + TSS region transcription start site region 56901
Tssr56902 6 67283933 to 67283981 48 + TSS region transcription start site region 56902
Tssr61244 6 67284015 to 67284060 45 - TSS region transcription start site region 61244
Tssr56903 6 67285331 to 67285335 4 + TSS region transcription start site region 56903
Il12rb2 6 67291318 to 67376188 84870 - protein coding gene interleukin 12 receptor, beta 2
Tssr61245 6 67292254 to 67292265 11 - TSS region transcription start site region 61245
Tssr61246 6 67315263 to 67315270 7 - TSS region transcription start site region 61246
D6Dcr13 6 67332428 to 67332526 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 13
Tssr61247 6 67339639 to 67339657 18 - TSS region transcription start site region 61247
Tssr61248 6 67339661 to 67339674 13 - TSS region transcription start site region 61248
D6Dcr14 6 67346251 to 67346349 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 14
Cpgi17510 6 67375901 to 67376374 473 CpG island CpG island 17510
Tssr61249 6 67376118 to 67376129 11 - TSS region transcription start site region 61249
Tssr61250 6 67376134 to 67376144 10 - TSS region transcription start site region 61250
Tssr61251 6 67376147 to 67376171 24 - TSS region transcription start site region 61251
Tssr1866 6 67376236 to 67376250 14 - TSS region transcription start site region 1866
Tssr61252 6 67376288 to 67376311 23 - TSS region transcription start site region 61252
Gm8574 6 67384418 to 67385341 923 - pseudogene predicted gene 8574
Gm44208 6 67406486 to 67406906 420 - pseudogene predicted gene, 44208
Gm4761 6 67414431 to 67415012 581 - pseudogene predicted gene 4761
Gm44083 6 67417715 to 67418051 336 - pseudogene predicted gene, 44083
Il23r 6 67422932 to 67491855 68923 - protein coding gene interleukin 23 receptor
Tssr61253 6 67491849 to 67491862 13 - TSS region transcription start site region 61253
Gm42889 6 67532489 to 67556204 23715 + lincRNA gene predicted gene 42889
Tssr1867 6 67532533 to 67532541 8 - TSS region transcription start site region 1867
Tssr1868 6 67532566 to 67532577 11 - TSS region transcription start site region 1868
Cpgi17511 6 67532881 to 67533408 527 CpG island CpG island 17511
Tssr1869 6 67533305 to 67533338 33 - TSS region transcription start site region 1869
Tssr1870 6 67533437 to 67533469 32 + TSS region transcription start site region 1870
Tssr61254 6 67533659 to 67533663 4 - TSS region transcription start site region 61254
Tssr1871 6 67533801 to 67533818 17 + TSS region transcription start site region 1871
Tacstd2 6 67534062 to 67535796 1734 - protein coding gene tumor-associated calcium signal transducer 2
Cpgi17512 6 67534650 to 67535876 1226 CpG island CpG island 17512
Tssr61255 6 67534730 to 67534745 15 - TSS region transcription start site region 61255
Tssr1872 6 67534772 to 67534781 9 - TSS region transcription start site region 1872
Tssr61256 6 67535194 to 67535226 32 - TSS region transcription start site region 61256
Tssr61257 6 67535685 to 67535697 12 - TSS region transcription start site region 61257
Tssr61258 6 67535783 to 67535802 19 - TSS region transcription start site region 61258
Tssr61259 6 67535828 to 67535870 42 - TSS region transcription start site region 61259
Tssr56904 6 67555579 to 67555595 16 + TSS region transcription start site region 56904
Tssr56905 6 67555597 to 67555612 15 + TSS region transcription start site region 56905
Tssr56906 6 67555630 to 67555635 5 + TSS region transcription start site region 56906
Igkv2-137 6 67555636 to 67556216 580 + gene segment immunoglobulin kappa chain variable 2-137
Igk 6 67555636 to 70726754 3171118 + complex/cluster/region immunoglobulin kappa chain complex
4930515G16Rik 6 67565234 to 67565699 465 - pseudogene RIKEN cDNA 4930515G16 gene
Igkv1-136 6 67594012 to 67594308 296 + pseudogenic gene segment immunoglobulin kappa chain variable 1-136
Tssr56907 6 67609711 to 67609717 6 + TSS region transcription start site region 56907
Igkv1-135 6 67609745 to 67610508 763 + gene segment immunoglobulin kappa variable 1-135
Gm9728 6 67633089 to 67634143 1054 - pseudogene predicted gene 9728
Rpl18a-ps2 6 67641530 to 67641703 173 - pseudogene ribosomal protein L18A, pseudogene 2
Igkv14-134-1 6 67711174 to 67711628 454 - pseudogenic gene segment immunoglobulin kappa chain variable 14-134-1
Gm38573 6 67717742 to 67721436 3694 - lncRNA gene predicted gene, 38573
Igkv17-134 6 67720729 to 67721225 496 - pseudogenic gene segment immunoglobulin kappa chain variable 17-134
Tssr56908 6 67724880 to 67724886 6 + TSS region transcription start site region 56908
Igkv1-133 6 67724914 to 67725661 747 + gene segment immunoglobulin kappa variable 1-133
Gm5308 6 67734251 to 67735604 1353 - pseudogene predicted gene 5308
Rpl18a-ps3 6 67748560 to 67748730 170 - pseudogene ribosomal protein L18A, pseudogene 3
Gm43284 6 67754746 to 67754998 252 + pseudogenic gene segment predicted gene 43284
Tssr56909 6 67759666 to 67759672 6 + TSS region transcription start site region 56909
Igkv1-132 6 67759700 to 67760413 713 + gene segment immunoglobulin kappa variable 1-132
Igkv1-131 6 67766036 to 67766772 736 - gene segment immunoglobulin kappa variable 1-131
Gm18980 6 67778250 to 67779328 1078 - pseudogene predicted gene, 18980
Tssr56910 6 67791023 to 67791027 4 + TSS region transcription start site region 56910
Igkv14-130 6 67791046 to 67791511 465 + gene segment immunoglobulin kappa variable 14-130
Gm22425 6 67792439 to 67792576 137 - snoRNA gene predicted gene, 22425
Gm24911 6 67804375 to 67804510 135 - snoRNA gene predicted gene, 24911