Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:65880439-68660443

Filter by:
262 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prdm5 6 65778988 to 65937010 158022 + protein coding gene PR domain containing 5
Gm20445 6 65882779 to 65883343 564 + pseudogene predicted gene 20445
Tssr56858 6 65952550 to 65952553 3 + TSS region transcription start site region 56858
Tssr56859 6 65952561 to 65952621 60 + TSS region transcription start site region 56859
4930544G11Rik 6 65952609 to 65954014 1405 + protein coding gene RIKEN cDNA 4930544G11 gene
Gm44404 6 65981866 to 65983441 1575 - pseudogene predicted gene, 44404
Gm23625 6 65989640 to 65989739 99 - snRNA gene predicted gene, 23625
Gm5876 6 65995637 to 65996330 693 + pseudogene predicted gene 5876
Gm36408 6 66148439 to 66272364 123925 - lncRNA gene predicted gene, 36408
Gm44289 6 66254743 to 66258205 3462 + pseudogene predicted gene, 44289
Tssr56860 6 66264122 to 66264170 48 + TSS region transcription start site region 56860
Tssr56861 6 66267705 to 66267709 4 + TSS region transcription start site region 56861
Gm31520 6 66272505 to 66284845 12340 + pseudogene predicted gene, 31520
Gm38824 6 66311011 to 66315679 4668 - lncRNA gene predicted gene, 38824
Gm44281 6 66398551 to 66398716 165 - pseudogene predicted gene, 44281
Gm44233 6 66398746 to 66398971 225 + pseudogene predicted gene, 44233
2610300M13Rik 6 66451949 to 66465738 13789 - lincRNA gene RIKEN cDNA 2610300M13 gene
D6Mit95 6 66473452 to 66473565 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 95
Tpm3-rs3 6 66515891 to 66517730 1839 - pseudogene tropomyosin 3, related sequence 3
Gm19764 6 66515893 to 66516541 648 + pseudogene predicted gene, 19764
Gm6786 6 66527014 to 66528926 1912 + pseudogene predicted gene 6786
Cpgi17504 6 66534971 to 66535869 898 CpG island CpG island 17504
Mad2l1 6 66535226 to 66541109 5883 + protein coding gene MAD2 mitotic arrest deficient-like 1
Tssr56862 6 66535392 to 66535412 20 + TSS region transcription start site region 56862
Tssr56863 6 66535418 to 66535482 64 + TSS region transcription start site region 56863
Tssr56864 6 66537533 to 66537544 11 + TSS region transcription start site region 56864
Vmn1r32 6 66552183 to 66559708 7525 - protein coding gene vomeronasal 1 receptor 32
Gm5307 6 66577210 to 66577969 759 + pseudogene predicted gene 5307
Vmn1r33 6 66611651 to 66612568 917 - protein coding gene vomeronasal 1 receptor 33
Vmn1r34 6 66636823 to 66637752 929 - protein coding gene vomeronasal 1 receptor 34
Vmn1r35 6 66678794 to 66679684 890 - protein coding gene vomeronasal 1 receptor 35
Tssr56865 6 66711645 to 66711650 5 + TSS region transcription start site region 56865
Gm6794 6 66711691 to 66712147 456 + pseudogene predicted gene 6794
Vmn1r36 6 66715972 to 66716889 917 - protein coding gene vomeronasal 1 receptor 36
Vmn1r37 6 66731392 to 66732300 908 + protein coding gene vomeronasal 1 receptor 37
Gm44261 6 66733969 to 66734177 208 - pseudogene predicted gene, 44261
Gm4045 6 66746017 to 66746326 309 + pseudogene predicted gene 4045
Vmn1r-ps24 6 66753381 to 66754279 898 - pseudogene vomeronasal 1 receptor, pseudogene 24
Vmn1r38 6 66776222 to 66777130 908 - protein coding gene vomeronasal 1 receptor 38
Vmn1r39 6 66804415 to 66805332 917 - protein coding gene vomeronasal 1 receptor 39
Gm36610 6 66840015 to 66842976 2961 - lncRNA gene predicted gene, 36610
Gm9794 6 66875321 to 66875743 422 - pseudogene predicted pseudogene 9794
Tssr61227 6 66875427 to 66875434 7 - TSS region transcription start site region 61227
Tssr61228 6 66875650 to 66875689 39 - TSS region transcription start site region 61228
Tssr61229 6 66875749 to 66875766 17 - TSS region transcription start site region 61229
4930597O21Rik 6 66894652 to 66896521 1869 - unclassified non-coding RNA gene RIKEN cDNA 4930597O21 gene
Cpgi17505 6 66896073 to 66897462 1389 CpG island CpG island 17505
Gng12 6 66896397 to 67021350 124953 + protein coding gene guanine nucleotide binding protein (G protein), gamma 12
Tssr56866 6 66896410 to 66896421 11 + TSS region transcription start site region 56866
Tssr56867 6 66896429 to 66896440 11 + TSS region transcription start site region 56867
Tssr56868 6 66896444 to 66896479 35 + TSS region transcription start site region 56868
Tssr56869 6 66896480 to 66896492 12 + TSS region transcription start site region 56869
Tssr61230 6 66896515 to 66896516 1 - TSS region transcription start site region 61230
Tssr56870 6 66912642 to 66912646 4 + TSS region transcription start site region 56870
Tssr56871 6 66918511 to 66918523 12 + TSS region transcription start site region 56871
Tssr56872 6 66935861 to 66935877 16 + TSS region transcription start site region 56872
Tssr56873 6 66957026 to 66957031 5 + TSS region transcription start site region 56873
Tssr56874 6 66963306 to 66963309 3 + TSS region transcription start site region 56874
Tssr56875 6 66970504 to 66970534 30 + TSS region transcription start site region 56875
Gm36816 6 66990031 to 67009260 19229 - antisense lncRNA gene predicted gene, 36816
Gm15644 6 67012485 to 67012871 386 + pseudogene predicted gene 15644
Tssr56876 6 67017498 to 67017522 24 + TSS region transcription start site region 56876
Tssr56877 6 67017639 to 67017652 13 + TSS region transcription start site region 56877
Tssr56878 6 67019719 to 67019734 15 + TSS region transcription start site region 56878
Tssr56879 6 67020297 to 67020334 37 + TSS region transcription start site region 56879
Gm29848 6 67022177 to 67022471 294 + pseudogene predicted gene, 29848
Gm25260 6 67027043 to 67027176 133 + snRNA gene predicted gene, 25260
Tssr61231 6 67029824 to 67029838 14 - TSS region transcription start site region 61231
Gadd45a 6 67035096 to 67037407 2311 - protein coding gene growth arrest and DNA-damage-inducible 45 alpha
Tssr61232 6 67035294 to 67035299 5 - TSS region transcription start site region 61232
Tssr1865 6 67035509 to 67035520 11 - TSS region transcription start site region 1865
Tssr61233 6 67035527 to 67035544 17 - TSS region transcription start site region 61233
Cpgi17506 6 67036453 to 67037698 1245 CpG island CpG island 17506
E230016M11Rik 6 67036599 to 67080652 44053 + lncRNA gene RIKEN cDNA E230016M11 gene
Tssr56880 6 67036640 to 67036676 36 + TSS region transcription start site region 56880
Tssr56881 6 67037199 to 67037201 2 + TSS region transcription start site region 56881
Tssr61234 6 67037207 to 67037220 13 - TSS region transcription start site region 61234
Tssr61235 6 67037378 to 67037394 16 - TSS region transcription start site region 61235
Tssr61236 6 67037399 to 67037417 18 - TSS region transcription start site region 61236
Tssr56882 6 67052952 to 67052962 10 + TSS region transcription start site region 56882
Cpgi17507 6 67088955 to 67089144 189 CpG island CpG island 17507
Gm29928 6 67091931 to 67103262 11331 + lncRNA gene predicted gene, 29928
Cpgi17508 6 67113898 to 67114224 326 CpG island CpG island 17508
Tssr56883 6 67115671 to 67115708 37 + TSS region transcription start site region 56883
Tssr56884 6 67146237 to 67146277 40 + TSS region transcription start site region 56884
A430010J10Rik 6 67157801 to 67165108 7307 + unclassified non-coding RNA gene RIKEN cDNA A430010J10 gene
Gm38825 6 67178681 to 67186716 8035 - antisense lncRNA gene predicted gene, 38825
Tssr61237 6 67186568 to 67186601 33 - TSS region transcription start site region 61237
Tssr61238 6 67186646 to 67186676 30 - TSS region transcription start site region 61238
Tssr56885 6 67205505 to 67205523 18 + TSS region transcription start site region 56885
Gm8566 6 67205619 to 67206083 464 + pseudogene predicted pseudogene 8566
Gm44052 6 67221902 to 67222544 642 - pseudogene predicted gene, 44052
Tssr56886 6 67226445 to 67226456 11 + TSS region transcription start site region 56886
Tssr56887 6 67236767 to 67236775 8 + TSS region transcription start site region 56887
Tssr61239 6 67237888 to 67237899 11 - TSS region transcription start site region 61239
Tssr61240 6 67237902 to 67237913 11 - TSS region transcription start site region 61240
Tssr56888 6 67238115 to 67238129 14 + TSS region transcription start site region 56888
Gm44050 6 67252025 to 67252928 903 - pseudogene predicted gene, 44050
Cpgi17509 6 67266223 to 67268214 1991 CpG island CpG island 17509
Serbp1 6 67266979 to 67289302 22323 + protein coding gene serpine1 mRNA binding protein 1
Tssr56889 6 67266987 to 67267021 34 + TSS region transcription start site region 56889
Tssr61241 6 67267397 to 67267425 28 - TSS region transcription start site region 61241
Tssr56890 6 67270439 to 67270443 4 + TSS region transcription start site region 56890
Tssr56891 6 67271193 to 67271230 37 + TSS region transcription start site region 56891
Tssr61242 6 67271215 to 67271288 73 - TSS region transcription start site region 61242
Tssr56892 6 67271257 to 67271278 21 + TSS region transcription start site region 56892
Tssr56893 6 67271908 to 67271920 12 + TSS region transcription start site region 56893
Tssr56894 6 67271927 to 67271956 29 + TSS region transcription start site region 56894
Tssr56895 6 67271957 to 67271982 25 + TSS region transcription start site region 56895
Tssr61243 6 67271966 to 67271983 17 - TSS region transcription start site region 61243
Tssr56896 6 67272159 to 67272196 37 + TSS region transcription start site region 56896
Tssr56897 6 67272888 to 67272913 25 + TSS region transcription start site region 56897
Tssr56898 6 67277758 to 67277807 49 + TSS region transcription start site region 56898
Tssr56899 6 67277812 to 67277833 21 + TSS region transcription start site region 56899
Tssr56900 6 67278217 to 67278220 3 + TSS region transcription start site region 56900
Tssr56901 6 67282087 to 67282091 4 + TSS region transcription start site region 56901
Tssr56902 6 67283933 to 67283981 48 + TSS region transcription start site region 56902
Tssr61244 6 67284015 to 67284060 45 - TSS region transcription start site region 61244
Tssr56903 6 67285331 to 67285335 4 + TSS region transcription start site region 56903
Il12rb2 6 67291318 to 67376188 84870 - protein coding gene interleukin 12 receptor, beta 2
Tssr61245 6 67292254 to 67292265 11 - TSS region transcription start site region 61245
Tssr61246 6 67315263 to 67315270 7 - TSS region transcription start site region 61246
D6Dcr13 6 67332428 to 67332526 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 13
Tssr61247 6 67339639 to 67339657 18 - TSS region transcription start site region 61247
Tssr61248 6 67339661 to 67339674 13 - TSS region transcription start site region 61248
D6Dcr14 6 67346251 to 67346349 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 14
Cpgi17510 6 67375901 to 67376374 473 CpG island CpG island 17510
Tssr61249 6 67376118 to 67376129 11 - TSS region transcription start site region 61249
Tssr61250 6 67376134 to 67376144 10 - TSS region transcription start site region 61250
Tssr61251 6 67376147 to 67376171 24 - TSS region transcription start site region 61251
Tssr1866 6 67376236 to 67376250 14 - TSS region transcription start site region 1866
Tssr61252 6 67376288 to 67376311 23 - TSS region transcription start site region 61252
Gm8574 6 67384418 to 67385341 923 - pseudogene predicted gene 8574
Gm44208 6 67406486 to 67406906 420 - pseudogene predicted gene, 44208
Gm4761 6 67414431 to 67415012 581 - pseudogene predicted gene 4761
Gm44083 6 67417715 to 67418051 336 - pseudogene predicted gene, 44083
Il23r 6 67422932 to 67491855 68923 - protein coding gene interleukin 23 receptor
Tssr61253 6 67491849 to 67491862 13 - TSS region transcription start site region 61253
Gm42889 6 67532489 to 67556204 23715 + lincRNA gene predicted gene 42889
Tssr1867 6 67532533 to 67532541 8 - TSS region transcription start site region 1867
Tssr1868 6 67532566 to 67532577 11 - TSS region transcription start site region 1868
Cpgi17511 6 67532881 to 67533408 527 CpG island CpG island 17511
Tssr1869 6 67533305 to 67533338 33 - TSS region transcription start site region 1869
Tssr1870 6 67533437 to 67533469 32 + TSS region transcription start site region 1870
Tssr61254 6 67533659 to 67533663 4 - TSS region transcription start site region 61254
Tssr1871 6 67533801 to 67533818 17 + TSS region transcription start site region 1871
Tacstd2 6 67534062 to 67535796 1734 - protein coding gene tumor-associated calcium signal transducer 2
Cpgi17512 6 67534650 to 67535876 1226 CpG island CpG island 17512
Tssr61255 6 67534730 to 67534745 15 - TSS region transcription start site region 61255
Tssr1872 6 67534772 to 67534781 9 - TSS region transcription start site region 1872
Tssr61256 6 67535194 to 67535226 32 - TSS region transcription start site region 61256
Tssr61257 6 67535685 to 67535697 12 - TSS region transcription start site region 61257
Tssr61258 6 67535783 to 67535802 19 - TSS region transcription start site region 61258
Tssr61259 6 67535828 to 67535870 42 - TSS region transcription start site region 61259
Tssr56904 6 67555579 to 67555595 16 + TSS region transcription start site region 56904
Tssr56905 6 67555597 to 67555612 15 + TSS region transcription start site region 56905
Tssr56906 6 67555630 to 67555635 5 + TSS region transcription start site region 56906
Igk 6 67555636 to 70726754 3171118 + complex/cluster/region immunoglobulin kappa chain complex
Igkv2-137 6 67555636 to 67556216 580 + gene segment immunoglobulin kappa chain variable 2-137
4930515G16Rik 6 67565234 to 67565699 465 - pseudogene RIKEN cDNA 4930515G16 gene
Igkv1-136 6 67594012 to 67594308 296 + pseudogenic gene segment immunoglobulin kappa chain variable 1-136
Tssr56907 6 67609711 to 67609717 6 + TSS region transcription start site region 56907
Igkv1-135 6 67609745 to 67610508 763 + gene segment immunoglobulin kappa variable 1-135
Gm9728 6 67633089 to 67634143 1054 - pseudogene predicted gene 9728
Rpl18a-ps2 6 67641530 to 67641703 173 - pseudogene ribosomal protein L18A, pseudogene 2
Igkv14-134-1 6 67711174 to 67711628 454 - pseudogenic gene segment immunoglobulin kappa chain variable 14-134-1
Gm38573 6 67717742 to 67721436 3694 - lncRNA gene predicted gene, 38573
Igkv17-134 6 67720729 to 67721225 496 - pseudogenic gene segment immunoglobulin kappa chain variable 17-134
Tssr56908 6 67724880 to 67724886 6 + TSS region transcription start site region 56908
Igkv1-133 6 67724914 to 67725661 747 + gene segment immunoglobulin kappa variable 1-133
Gm5308 6 67734251 to 67735604 1353 - pseudogene predicted gene 5308
Rpl18a-ps3 6 67748560 to 67748730 170 - pseudogene ribosomal protein L18A, pseudogene 3
Gm43284 6 67754746 to 67754998 252 + pseudogenic gene segment predicted gene 43284
Tssr56909 6 67759666 to 67759672 6 + TSS region transcription start site region 56909
Igkv1-132 6 67759700 to 67760413 713 + gene segment immunoglobulin kappa variable 1-132
Igkv1-131 6 67766036 to 67766772 736 - gene segment immunoglobulin kappa variable 1-131
Gm18980 6 67778250 to 67779328 1078 - pseudogene predicted gene, 18980
Tssr56910 6 67791023 to 67791027 4 + TSS region transcription start site region 56910
Igkv14-130 6 67791046 to 67791511 465 + gene segment immunoglobulin kappa variable 14-130
Gm22425 6 67792439 to 67792576 137 - snoRNA gene predicted gene, 22425
Gm24911 6 67804375 to 67804510 135 - snoRNA gene predicted gene, 24911
Igkv9-129 6 67839793 to 67840266 473 + gene segment immunoglobulin kappa variable 9-129
Igkv9-128 6 67847409 to 67847874 465 + pseudogenic gene segment immunoglobulin kappa chain variable 9-128
Tssr56911 6 67861130 to 67861139 9 + TSS region transcription start site region 56911
Igkv17-127 6 67861159 to 67861659 500 + gene segment immunoglobulin kappa variable 17-127
Tssr1873 6 67875984 to 67875986 2 + TSS region transcription start site region 1873
Igkv14-126-1 6 67876011 to 67876477 466 + pseudogenic gene segment immunoglobulin kappa chain variable 14-126-1
Gm9729 6 67883346 to 67883610 264 - pseudogene predicted gene 9729
Tssr56912 6 67896151 to 67896152 1 + TSS region transcription start site region 56912
Igkv14-126 6 67896177 to 67896642 465 + pseudogenic gene segment immunoglobulin kappa variable 14-126
Gm25910 6 67897065 to 67897204 139 - snoRNA gene predicted gene, 25910
Tssr56913 6 67913550 to 67913557 7 + TSS region transcription start site region 56913
Igkv11-125 6 67913573 to 67914052 479 + gene segment immunoglobulin kappa variable 11-125
Igkv9-124 6 67942076 to 67942540 464 - gene segment immunoglobulin kappa chain variable 9-124
Tssr61260 6 67942549 to 67942565 16 - TSS region transcription start site region 61260
Igkv9-123 6 67954230 to 67954690 460 - gene segment immunoglobulin kappa variable 9-123
Tssr61261 6 67954708 to 67954716 8 - TSS region transcription start site region 61261
Tssr56914 6 68016707 to 68016714 7 + TSS region transcription start site region 56914
Igkv1-122 6 68016742 to 68017488 746 + gene segment immunoglobulin kappa chain variable 1-122
Tssr56915 6 68036788 to 68036813 25 + TSS region transcription start site region 56915