Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:65639743-66873205

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D6Rck337 6 65642038 to 65642305 267 DNA segment DNA segment, Chr 6, Rockefeller University 337
Tssr56851 6 65653081 to 65653109 28 + TSS region transcription start site region 56851
Gm36144 6 65662049 to 65671247 9198 - lncRNA gene predicted gene, 36144
Cpgi17502 6 65671010 to 65673020 2010 CpG island CpG island 17502
Tssr56852 6 65671603 to 65671618 15 + TSS region transcription start site region 56852
Ndnf 6 65671611 to 65712323 40712 + protein coding gene neuron-derived neurotrophic factor
Tssr56853 6 65671756 to 65671770 14 + TSS region transcription start site region 56853
Gm15490 6 65757936 to 65758322 386 + pseudogene predicted gene 15490
Gm16838 6 65768544 to 65779249 10705 - antisense lncRNA gene predicted gene, 16838
Cpgi17503 6 65778641 to 65779471 830 CpG island CpG island 17503
Prdm5 6 65778988 to 65937010 158022 + protein coding gene PR domain containing 5
Tssr56854 6 65778994 to 65779062 68 + TSS region transcription start site region 56854
Tssr61222 6 65779636 to 65779642 6 - TSS region transcription start site region 61222
Tssr61223 6 65779689 to 65779694 5 - TSS region transcription start site region 61223
Tssr61224 6 65779697 to 65779706 9 - TSS region transcription start site region 61224
Tssr61225 6 65779714 to 65779723 9 - TSS region transcription start site region 61225
Tssr61226 6 65779773 to 65779778 5 - TSS region transcription start site region 61226
Tssr56855 6 65790008 to 65790009 1 + TSS region transcription start site region 56855
Tssr56856 6 65797507 to 65797528 21 + TSS region transcription start site region 56856
Tssr56857 6 65818309 to 65818318 9 + TSS region transcription start site region 56857
Gm23543 6 65864171 to 65864276 105 - snRNA gene predicted gene, 23543
Gm20445 6 65882779 to 65883343 564 + pseudogene predicted gene 20445
Tssr56858 6 65952550 to 65952553 3 + TSS region transcription start site region 56858
Tssr56859 6 65952561 to 65952621 60 + TSS region transcription start site region 56859
4930544G11Rik 6 65952609 to 65954014 1405 + protein coding gene RIKEN cDNA 4930544G11 gene
Gm44404 6 65981866 to 65983441 1575 - pseudogene predicted gene, 44404
Gm23625 6 65989640 to 65989739 99 - snRNA gene predicted gene, 23625
Gm5876 6 65995637 to 65996330 693 + pseudogene predicted gene 5876
Gm36408 6 66148439 to 66272364 123925 - lncRNA gene predicted gene, 36408
Gm44289 6 66254743 to 66258205 3462 + pseudogene predicted gene, 44289
Tssr56860 6 66264122 to 66264170 48 + TSS region transcription start site region 56860
Tssr56861 6 66267705 to 66267709 4 + TSS region transcription start site region 56861
Gm31520 6 66272505 to 66284845 12340 + pseudogene predicted gene, 31520
Gm38824 6 66311011 to 66315679 4668 - lncRNA gene predicted gene, 38824
Gm44281 6 66398551 to 66398716 165 - pseudogene predicted gene, 44281
Gm44233 6 66398746 to 66398971 225 + pseudogene predicted gene, 44233
2610300M13Rik 6 66451949 to 66465738 13789 - lincRNA gene RIKEN cDNA 2610300M13 gene
D6Mit95 6 66473452 to 66473565 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 95
Tpm3-rs3 6 66515891 to 66517730 1839 - pseudogene tropomyosin 3, related sequence 3
Gm19764 6 66515893 to 66516541 648 + pseudogene predicted gene, 19764
Gm6786 6 66527014 to 66528926 1912 + pseudogene predicted gene 6786
Cpgi17504 6 66534971 to 66535869 898 CpG island CpG island 17504
Mad2l1 6 66535226 to 66541109 5883 + protein coding gene MAD2 mitotic arrest deficient-like 1
Tssr56862 6 66535392 to 66535412 20 + TSS region transcription start site region 56862
Tssr56863 6 66535418 to 66535482 64 + TSS region transcription start site region 56863
Tssr56864 6 66537533 to 66537544 11 + TSS region transcription start site region 56864
Vmn1r32 6 66552183 to 66559708 7525 - protein coding gene vomeronasal 1 receptor 32
Gm5307 6 66577210 to 66577969 759 + pseudogene predicted gene 5307
Vmn1r33 6 66611651 to 66612568 917 - protein coding gene vomeronasal 1 receptor 33
Vmn1r34 6 66636823 to 66637752 929 - protein coding gene vomeronasal 1 receptor 34
Vmn1r35 6 66678794 to 66679684 890 - protein coding gene vomeronasal 1 receptor 35
Tssr56865 6 66711645 to 66711650 5 + TSS region transcription start site region 56865
Gm6794 6 66711691 to 66712147 456 + pseudogene predicted gene 6794
Vmn1r36 6 66715972 to 66716889 917 - protein coding gene vomeronasal 1 receptor 36
Vmn1r37 6 66731392 to 66732300 908 + protein coding gene vomeronasal 1 receptor 37
Gm44261 6 66733969 to 66734177 208 - pseudogene predicted gene, 44261
Gm4045 6 66746017 to 66746326 309 + pseudogene predicted gene 4045
Vmn1r-ps24 6 66753381 to 66754279 898 - pseudogene vomeronasal 1 receptor, pseudogene 24
Vmn1r38 6 66776222 to 66777130 908 - protein coding gene vomeronasal 1 receptor 38
Vmn1r39 6 66804415 to 66805332 917 - protein coding gene vomeronasal 1 receptor 39
Gm36610 6 66840015 to 66842976 2961 - lncRNA gene predicted gene, 36610