Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:65429743-67083205

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C130060K24Rik 6 65381294 to 65458150 76856 + protein coding gene RIKEN cDNA C130060K24 gene
Gm18913 6 65432160 to 65433948 1788 + pseudogene predicted gene, 18913
Tssr56821 6 65432466 to 65432515 49 + TSS region transcription start site region 56821
Tssr56822 6 65432870 to 65432898 28 + TSS region transcription start site region 56822
Tssr56823 6 65433147 to 65433157 10 + TSS region transcription start site region 56823
D6Mit162 6 65485846 to 65485971 125 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162
D6Mit162.1 6 65485947 to 65486071 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162.1
Tssr56824 6 65525308 to 65525320 12 + TSS region transcription start site region 56824
Tssr56825 6 65525322 to 65525335 13 + TSS region transcription start site region 56825
Tssr56826 6 65525359 to 65525371 12 + TSS region transcription start site region 56826
Tssr56827 6 65590382 to 65590412 30 + TSS region transcription start site region 56827
Tnip3 6 65590398 to 65634040 43642 + protein coding gene TNFAIP3 interacting protein 3
Tssr56828 6 65590416 to 65590432 16 + TSS region transcription start site region 56828
Tssr56829 6 65590454 to 65590459 5 + TSS region transcription start site region 56829
Tssr56830 6 65594776 to 65594780 4 + TSS region transcription start site region 56830
Tssr56831 6 65596126 to 65596146 20 + TSS region transcription start site region 56831
Tssr56832 6 65596590 to 65596606 16 + TSS region transcription start site region 56832
Tssr56833 6 65597354 to 65597372 18 + TSS region transcription start site region 56833
Tssr56834 6 65601165 to 65601208 43 + TSS region transcription start site region 56834
Tssr56835 6 65601582 to 65601629 47 + TSS region transcription start site region 56835
Tssr56836 6 65602822 to 65602855 33 + TSS region transcription start site region 56836
Tssr56837 6 65612221 to 65612225 4 + TSS region transcription start site region 56837
Tssr56838 6 65621864 to 65621870 6 + TSS region transcription start site region 56838
Tssr56839 6 65625156 to 65625203 47 + TSS region transcription start site region 56839
Tssr56840 6 65625425 to 65625441 16 + TSS region transcription start site region 56840
Tssr56841 6 65627005 to 65627015 10 + TSS region transcription start site region 56841
Tssr56842 6 65627144 to 65627157 13 + TSS region transcription start site region 56842
Tssr56843 6 65627158 to 65627172 14 + TSS region transcription start site region 56843
Tssr56844 6 65631232 to 65631246 14 + TSS region transcription start site region 56844
Tssr56845 6 65631293 to 65631307 14 + TSS region transcription start site region 56845
Tssr56846 6 65631315 to 65631345 30 + TSS region transcription start site region 56846
Tssr56847 6 65631369 to 65631426 57 + TSS region transcription start site region 56847
Tssr56848 6 65631500 to 65631517 17 + TSS region transcription start site region 56848
Tssr56849 6 65631521 to 65631549 28 + TSS region transcription start site region 56849
Tssr56850 6 65631940 to 65631962 22 + TSS region transcription start site region 56850
D6Rck337 6 65642038 to 65642305 267 DNA segment DNA segment, Chr 6, Rockefeller University 337
Tssr56851 6 65653081 to 65653109 28 + TSS region transcription start site region 56851
Gm36144 6 65662049 to 65671247 9198 - lncRNA gene predicted gene, 36144
Cpgi17502 6 65671010 to 65673020 2010 CpG island CpG island 17502
Tssr56852 6 65671603 to 65671618 15 + TSS region transcription start site region 56852
Ndnf 6 65671611 to 65712323 40712 + protein coding gene neuron-derived neurotrophic factor
Tssr56853 6 65671756 to 65671770 14 + TSS region transcription start site region 56853
Gm15490 6 65757936 to 65758322 386 + pseudogene predicted gene 15490
Gm16838 6 65768544 to 65779249 10705 - antisense lncRNA gene predicted gene, 16838
Cpgi17503 6 65778641 to 65779471 830 CpG island CpG island 17503
Prdm5 6 65778988 to 65937010 158022 + protein coding gene PR domain containing 5
Tssr56854 6 65778994 to 65779062 68 + TSS region transcription start site region 56854
Tssr61222 6 65779636 to 65779642 6 - TSS region transcription start site region 61222
Tssr61223 6 65779689 to 65779694 5 - TSS region transcription start site region 61223
Tssr61224 6 65779697 to 65779706 9 - TSS region transcription start site region 61224
Tssr61225 6 65779714 to 65779723 9 - TSS region transcription start site region 61225
Tssr61226 6 65779773 to 65779778 5 - TSS region transcription start site region 61226
Tssr56855 6 65790008 to 65790009 1 + TSS region transcription start site region 56855
Tssr56856 6 65797507 to 65797528 21 + TSS region transcription start site region 56856
Tssr56857 6 65818309 to 65818318 9 + TSS region transcription start site region 56857
Gm23543 6 65864171 to 65864276 105 - snRNA gene predicted gene, 23543
Gm20445 6 65882779 to 65883343 564 + pseudogene predicted gene 20445
Tssr56858 6 65952550 to 65952553 3 + TSS region transcription start site region 56858
Tssr56859 6 65952561 to 65952621 60 + TSS region transcription start site region 56859
4930544G11Rik 6 65952609 to 65954014 1405 + protein coding gene RIKEN cDNA 4930544G11 gene
Gm44404 6 65981866 to 65983441 1575 - pseudogene predicted gene, 44404
Gm23625 6 65989640 to 65989739 99 - snRNA gene predicted gene, 23625
Gm5876 6 65995637 to 65996330 693 + pseudogene predicted gene 5876
Gm36408 6 66148439 to 66272364 123925 - lncRNA gene predicted gene, 36408
Gm44289 6 66254743 to 66258205 3462 + pseudogene predicted gene, 44289
Tssr56860 6 66264122 to 66264170 48 + TSS region transcription start site region 56860
Tssr56861 6 66267705 to 66267709 4 + TSS region transcription start site region 56861
Gm31520 6 66272505 to 66284845 12340 + pseudogene predicted gene, 31520
Gm38824 6 66311011 to 66315679 4668 - lncRNA gene predicted gene, 38824
Gm44281 6 66398551 to 66398716 165 - pseudogene predicted gene, 44281
Gm44233 6 66398746 to 66398971 225 + pseudogene predicted gene, 44233
2610300M13Rik 6 66451949 to 66465738 13789 - lincRNA gene RIKEN cDNA 2610300M13 gene
D6Mit95 6 66473452 to 66473565 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 95
Tpm3-rs3 6 66515891 to 66517730 1839 - pseudogene tropomyosin 3, related sequence 3
Gm19764 6 66515893 to 66516541 648 + pseudogene predicted gene, 19764
Gm6786 6 66527014 to 66528926 1912 + pseudogene predicted gene 6786
Cpgi17504 6 66534971 to 66535869 898 CpG island CpG island 17504
Mad2l1 6 66535226 to 66541109 5883 + protein coding gene MAD2 mitotic arrest deficient-like 1
Tssr56862 6 66535392 to 66535412 20 + TSS region transcription start site region 56862
Tssr56863 6 66535418 to 66535482 64 + TSS region transcription start site region 56863
Tssr56864 6 66537533 to 66537544 11 + TSS region transcription start site region 56864
Vmn1r32 6 66552183 to 66559708 7525 - protein coding gene vomeronasal 1 receptor 32
Gm5307 6 66577210 to 66577969 759 + pseudogene predicted gene 5307
Vmn1r33 6 66611651 to 66612568 917 - protein coding gene vomeronasal 1 receptor 33
Vmn1r34 6 66636823 to 66637752 929 - protein coding gene vomeronasal 1 receptor 34
Vmn1r35 6 66678794 to 66679684 890 - protein coding gene vomeronasal 1 receptor 35
Tssr56865 6 66711645 to 66711650 5 + TSS region transcription start site region 56865
Gm6794 6 66711691 to 66712147 456 + pseudogene predicted gene 6794
Vmn1r36 6 66715972 to 66716889 917 - protein coding gene vomeronasal 1 receptor 36
Vmn1r37 6 66731392 to 66732300 908 + protein coding gene vomeronasal 1 receptor 37
Gm44261 6 66733969 to 66734177 208 - pseudogene predicted gene, 44261
Gm4045 6 66746017 to 66746326 309 + pseudogene predicted gene 4045
Vmn1r-ps24 6 66753381 to 66754279 898 - pseudogene vomeronasal 1 receptor, pseudogene 24
Vmn1r38 6 66776222 to 66777130 908 - protein coding gene vomeronasal 1 receptor 38
Vmn1r39 6 66804415 to 66805332 917 - protein coding gene vomeronasal 1 receptor 39
Gm36610 6 66840015 to 66842976 2961 - lncRNA gene predicted gene, 36610
Gm9794 6 66875321 to 66875743 422 - pseudogene predicted pseudogene 9794
Tssr61227 6 66875427 to 66875434 7 - TSS region transcription start site region 61227
Tssr61228 6 66875650 to 66875689 39 - TSS region transcription start site region 61228
Tssr61229 6 66875749 to 66875766 17 - TSS region transcription start site region 61229
4930597O21Rik 6 66894652 to 66896521 1869 - unclassified non-coding RNA gene RIKEN cDNA 4930597O21 gene
Cpgi17505 6 66896073 to 66897462 1389 CpG island CpG island 17505
Gng12 6 66896397 to 67021350 124953 + protein coding gene guanine nucleotide binding protein (G protein), gamma 12
Tssr56866 6 66896410 to 66896421 11 + TSS region transcription start site region 56866
Tssr56867 6 66896429 to 66896440 11 + TSS region transcription start site region 56867
Tssr56868 6 66896444 to 66896479 35 + TSS region transcription start site region 56868
Tssr56869 6 66896480 to 66896492 12 + TSS region transcription start site region 56869
Tssr61230 6 66896515 to 66896516 1 - TSS region transcription start site region 61230
Tssr56870 6 66912642 to 66912646 4 + TSS region transcription start site region 56870
Tssr56871 6 66918511 to 66918523 12 + TSS region transcription start site region 56871
Tssr56872 6 66935861 to 66935877 16 + TSS region transcription start site region 56872
Tssr56873 6 66957026 to 66957031 5 + TSS region transcription start site region 56873
Tssr56874 6 66963306 to 66963309 3 + TSS region transcription start site region 56874
Tssr56875 6 66970504 to 66970534 30 + TSS region transcription start site region 56875
Gm36816 6 66990031 to 67009260 19229 - antisense lncRNA gene predicted gene, 36816
Gm15644 6 67012485 to 67012871 386 + pseudogene predicted gene 15644
Tssr56876 6 67017498 to 67017522 24 + TSS region transcription start site region 56876
Tssr56877 6 67017639 to 67017652 13 + TSS region transcription start site region 56877
Tssr56878 6 67019719 to 67019734 15 + TSS region transcription start site region 56878
Tssr56879 6 67020297 to 67020334 37 + TSS region transcription start site region 56879
Gm29848 6 67022177 to 67022471 294 + pseudogene predicted gene, 29848
Gm25260 6 67027043 to 67027176 133 + snRNA gene predicted gene, 25260
Tssr61231 6 67029824 to 67029838 14 - TSS region transcription start site region 61231
Gadd45a 6 67035096 to 67037407 2311 - protein coding gene growth arrest and DNA-damage-inducible 45 alpha
Tssr61232 6 67035294 to 67035299 5 - TSS region transcription start site region 61232
Tssr1865 6 67035509 to 67035520 11 - TSS region transcription start site region 1865
Tssr61233 6 67035527 to 67035544 17 - TSS region transcription start site region 61233
Cpgi17506 6 67036453 to 67037698 1245 CpG island CpG island 17506
E230016M11Rik 6 67036599 to 67080652 44053 + lncRNA gene RIKEN cDNA E230016M11 gene
Tssr56880 6 67036640 to 67036676 36 + TSS region transcription start site region 56880
Tssr56881 6 67037199 to 67037201 2 + TSS region transcription start site region 56881
Tssr61234 6 67037207 to 67037220 13 - TSS region transcription start site region 61234
Tssr61235 6 67037378 to 67037394 16 - TSS region transcription start site region 61235
Tssr61236 6 67037399 to 67037417 18 - TSS region transcription start site region 61236
Tssr56882 6 67052952 to 67052962 10 + TSS region transcription start site region 56882