Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:136012539-136644983

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pabr1 6 103777444 to 136423692 32646248 QTL plasma apolipoprotein B (human) regulator 1
Aaj3 6 104503360 to 136423692 31920332 QTL anxiety in A/J 3
Cmv4 6 127838217 to 136045152 8206935 QTL cytomegalovirus resistance 4
Ath38 6 128518894 to 136316178 7797284 QTL atherosclerosis 38
Lvic3 6 134119450 to 136045152 1925702 QTL liver iron content 3
Grin2b 6 135729795 to 136173822 444027 - protein coding gene glutamate receptor, ionotropic, NMDA2B (epsilon 2)
Tssr59307 6 136016763 to 136016767 4 + TSS region transcription start site region 59307
Cpgi18098 6 136043965 to 136044384 419 CpG island CpG island 18098
D6Mit301 6 136045041 to 136045152 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 301
Tssr2039 6 136120287 to 136120333 46 + TSS region transcription start site region 2039
Tssr63781 6 136171513 to 136171524 11 - TSS region transcription start site region 63781
Tssr63782 6 136171823 to 136171849 26 - TSS region transcription start site region 63782
Cpgi18099 6 136172091 to 136173014 923 CpG island CpG island 18099
Tssr63783 6 136172156 to 136172176 20 - TSS region transcription start site region 63783
Tssr63784 6 136172179 to 136172245 66 - TSS region transcription start site region 63784
Tssr63785 6 136172312 to 136172323 11 - TSS region transcription start site region 63785
Tssr63786 6 136172330 to 136172333 3 - TSS region transcription start site region 63786
Tssr63787 6 136172376 to 136172396 20 - TSS region transcription start site region 63787
Tssr63788 6 136172403 to 136172415 12 - TSS region transcription start site region 63788
Tssr63789 6 136172431 to 136172436 5 - TSS region transcription start site region 63789
Tssr63790 6 136172920 to 136172923 3 - TSS region transcription start site region 63790
Gm26653 6 136173061 to 136175664 2603 + antisense lncRNA gene predicted gene, 26653
Tssr63791 6 136173080 to 136173093 13 - TSS region transcription start site region 63791
Tssr63792 6 136173094 to 136173149 55 - TSS region transcription start site region 63792
Tssr63793 6 136173272 to 136173303 31 - TSS region transcription start site region 63793
Tssr63794 6 136173492 to 136173523 31 - TSS region transcription start site region 63794
Tssr63795 6 136173530 to 136173550 20 - TSS region transcription start site region 63795
Tssr63796 6 136173638 to 136173655 17 - TSS region transcription start site region 63796
Tssr2040 6 136234057 to 136234063 6 + TSS region transcription start site region 2040
Gm18224 6 136256032 to 136257216 1184 - pseudogene predicted gene, 18224
Gm26105 6 136281227 to 136281416 189 + snRNA gene predicted gene, 26105
D6Mit258 6 136315973 to 136316178 205 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 258
Gm8994 6 136327539 to 136329983 2444 + protein coding gene predicted gene 8994
Tssr59308 6 136328517 to 136328527 10 + TSS region transcription start site region 59308
Cpgi18100 6 136328542 to 136328781 239 CpG island CpG island 18100
Gm15476 6 136383728 to 136384918 1190 + pseudogene predicted gene 15476
Tssr59309 6 136398422 to 136398425 3 + TSS region transcription start site region 59309
Tubb3-ps1 6 136398435 to 136400135 1700 + pseudogene tubulin, beta 3 class III, pseudogene 1
Cpgi18101 6 136399207 to 136399551 344 CpG island CpG island 18101
E330021D16Rik 6 136400317 to 136415569 15252 - protein coding gene RIKEN cDNA E330021D16 gene
Cpgi18102 6 136401484 to 136401869 385 CpG island CpG island 18102
Tssr63797 6 136415567 to 136415572 5 - TSS region transcription start site region 63797
Tssr59310 6 136417811 to 136417816 5 + TSS region transcription start site region 59310
Gm25882 6 136417812 to 136417896 84 + snRNA gene predicted gene, 25882
D6Mit339 6 136423576 to 136423692 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 339
D6Mit339.2 6 136423667 to 136423781 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 339.2
Tabw2 6 136423692 to 46935985 -89487707 QTL tally ho associated body weight 2
Gm36844 6 136448887 to 136454720 5833 - lncRNA gene predicted gene, 36844
Tssr63798 6 136449311 to 136449330 19 - TSS region transcription start site region 63798
Tssr63799 6 136449346 to 136449357 11 - TSS region transcription start site region 63799
Tssr63800 6 136449450 to 136449463 13 - TSS region transcription start site region 63800
Gm36897 6 136463230 to 136471408 8178 + lncRNA gene predicted gene, 36897
Tssr59311 6 136463669 to 136463693 24 + TSS region transcription start site region 59311
Tssr59312 6 136470565 to 136470589 24 + TSS region transcription start site region 59312
Gm6728 6 136486125 to 136487186 1061 - pseudogene predicted gene 6728
Cpgi18103 6 136486985 to 136487228 243 CpG island CpG island 18103
Gm44131 6 136488319 to 136488712 393 + pseudogene predicted gene, 44131
Tssr59313 6 136488733 to 136488769 36 + TSS region transcription start site region 59313
Rpl36a-ps3 6 136488807 to 136489127 320 + pseudogene ribosomal protein L36A, pseudogene 3
Tssr63801 6 136497896 to 136497900 4 - TSS region transcription start site region 63801
Tssr63802 6 136499716 to 136499720 4 - TSS region transcription start site region 63802
Tssr59314 6 136501072 to 136501076 4 + TSS region transcription start site region 59314
Gm44140 6 136514976 to 136519031 4055 - bidirectional promoter lncRNA gene predicted gene, 44140
Tssr63803 6 136518498 to 136518501 3 - TSS region transcription start site region 63803
Cpgi18104 6 136518601 to 136519340 739 CpG island CpG island 18104
Tssr63804 6 136518761 to 136518772 11 - TSS region transcription start site region 63804
Tssr59315 6 136518786 to 136518810 24 + TSS region transcription start site region 59315
Atf7ip 6 136518807 to 136610850 92043 + protein coding gene activating transcription factor 7 interacting protein
Tssr59316 6 136518820 to 136518851 31 + TSS region transcription start site region 59316
Tssr59317 6 136518866 to 136518875 9 + TSS region transcription start site region 59317
Tssr63805 6 136519058 to 136519077 19 - TSS region transcription start site region 63805
Tssr59318 6 136520403 to 136520407 4 + TSS region transcription start site region 59318
Tssr63806 6 136532580 to 136532595 15 - TSS region transcription start site region 63806
Tssr59319 6 136532903 to 136532919 16 + TSS region transcription start site region 59319
Tssr59320 6 136532924 to 136532939 15 + TSS region transcription start site region 59320
Tssr59321 6 136532940 to 136532976 36 + TSS region transcription start site region 59321
Tssr59322 6 136551161 to 136551179 18 + TSS region transcription start site region 59322
Tssr59323 6 136553972 to 136553996 24 + TSS region transcription start site region 59323
5830415B17Rik 6 136554021 to 136555189 1168 unclassified gene RIKEN cDNA 5830415B17 gene
Tssr59324 6 136555058 to 136555075 17 + TSS region transcription start site region 59324
Tssr63807 6 136555586 to 136555593 7 - TSS region transcription start site region 63807
Tssr63808 6 136555613 to 136555626 13 - TSS region transcription start site region 63808
Tssr63809 6 136558718 to 136558736 18 - TSS region transcription start site region 63809
Tssr59325 6 136576332 to 136576336 4 + TSS region transcription start site region 59325
Tssr59326 6 136587533 to 136587555 22 + TSS region transcription start site region 59326
Tssr59327 6 136587561 to 136587582 21 + TSS region transcription start site region 59327
Plbd1 6 136612070 to 136661928 49858 - protein coding gene phospholipase B domain containing 1
Gm44401 6 136620632 to 136623006 2374 + unclassified gene predicted gene, 44401
Gm40409 6 136625542 to 136639918 14376 + lncRNA gene predicted gene, 40409
Tssr59328 6 136630196 to 136630245 49 + TSS region transcription start site region 59328
Tssr59329 6 136630266 to 136630272 6 + TSS region transcription start site region 59329