Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:125399415-126369524

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr58974 6 125411307 to 125411335 28 + TSS region transcription start site region 58974
D6Jpk2 6 125418005 to 125418132 127 DNA segment DNA segment, Chr 6, Japan, Kominami 2
Tssr2021 6 125425443 to 125425475 32 - TSS region transcription start site region 2021
Cpgi18008 6 125426458 to 125426751 293 CpG island CpG island 18008
Gm32673 6 125430930 to 125460475 29545 + lncRNA gene predicted gene, 32673
Tssr58975 6 125432662 to 125432674 12 + TSS region transcription start site region 58975
Tssr58976 6 125432679 to 125432690 11 + TSS region transcription start site region 58976
Tssr58977 6 125432700 to 125432724 24 + TSS region transcription start site region 58977
Tssr58978 6 125432731 to 125432752 21 + TSS region transcription start site region 58978
Tssr58979 6 125432773 to 125432784 11 + TSS region transcription start site region 58979
Tssr58980 6 125434327 to 125434332 5 + TSS region transcription start site region 58980
Cd9 6 125460266 to 125494755 34489 - protein coding gene CD9 antigen
Tssr63297 6 125460588 to 125460599 11 - TSS region transcription start site region 63297
Tssr63298 6 125460605 to 125460615 10 - TSS region transcription start site region 63298
Tssr63299 6 125460630 to 125460641 11 - TSS region transcription start site region 63299
Tssr63300 6 125460656 to 125460668 12 - TSS region transcription start site region 63300
Tssr63301 6 125462155 to 125462179 24 - TSS region transcription start site region 63301
Tssr63302 6 125463711 to 125463743 32 - TSS region transcription start site region 63302
Cpgi18009 6 125467273 to 125467499 226 CpG island CpG island 18009
Tssr63303 6 125468325 to 125468332 7 - TSS region transcription start site region 63303
Gm28809 6 125481363 to 125484678 3315 + antisense lncRNA gene predicted gene 28809
Tssr63304 6 125481715 to 125481725 10 - TSS region transcription start site region 63304
Tssr63305 6 125481768 to 125481773 5 - TSS region transcription start site region 63305
Tssr63306 6 125481779 to 125481788 9 - TSS region transcription start site region 63306
Tssr63307 6 125481814 to 125481822 8 - TSS region transcription start site region 63307
Tssr63308 6 125481829 to 125481837 8 - TSS region transcription start site region 63308
Tssr58981 6 125481925 to 125481949 24 + TSS region transcription start site region 58981
Tssr58982 6 125481968 to 125481979 11 + TSS region transcription start site region 58982
Tssr58983 6 125482524 to 125482549 25 + TSS region transcription start site region 58983
Tssr63309 6 125483498 to 125483508 10 - TSS region transcription start site region 63309
Tssr63310 6 125483511 to 125483525 14 - TSS region transcription start site region 63310
Tssr58984 6 125483653 to 125483699 46 + TSS region transcription start site region 58984
Gm38549 6 125493038 to 125499609 6571 + lncRNA gene predicted gene, 38549
Tssr58985 6 125493312 to 125493332 20 + TSS region transcription start site region 58985
Cpgi18010 6 125494038 to 125495113 1075 CpG island CpG island 18010
Tssr58986 6 125494419 to 125494454 35 + TSS region transcription start site region 58986
Tssr63311 6 125494638 to 125494669 31 - TSS region transcription start site region 63311
Tssr63312 6 125494706 to 125494748 42 - TSS region transcription start site region 63312
Tssr63313 6 125494754 to 125494765 11 - TSS region transcription start site region 63313
Tssr58987 6 125494869 to 125494904 35 + TSS region transcription start site region 58987
Gm26728 6 125499647 to 125509830 10183 + lncRNA gene predicted gene, 26728
Tssr58988 6 125532552 to 125532559 7 + TSS region transcription start site region 58988
Tssr58989 6 125532592 to 125532603 11 + TSS region transcription start site region 58989
Tssr63314 6 125533348 to 125533357 9 - TSS region transcription start site region 63314
Tssr58990 6 125538734 to 125538741 7 + TSS region transcription start site region 58990
Tssr58991 6 125539708 to 125539716 8 + TSS region transcription start site region 58991
Tssr63315 6 125540302 to 125540322 20 - TSS region transcription start site region 63315
Gm33144 6 125542652 to 125546613 3961 + lncRNA gene predicted gene, 33144
Tssr58992 6 125552933 to 125552938 5 + TSS region transcription start site region 58992
Vwf 6 125552935 to 125686679 133744 + protein coding gene Von Willebrand factor
Tssr58993 6 125552953 to 125552980 27 + TSS region transcription start site region 58993
Tssr58994 6 125565585 to 125565597 12 + TSS region transcription start site region 58994
Tssr63316 6 125573318 to 125573345 27 - TSS region transcription start site region 63316
Tssr58995 6 125584415 to 125584431 16 + TSS region transcription start site region 58995
Tssr58996 6 125590860 to 125590868 8 + TSS region transcription start site region 58996
Tssr63317 6 125595020 to 125595023 3 - TSS region transcription start site region 63317
Cpgi18011 6 125603317 to 125603640 323 CpG island CpG island 18011
Cpgi18012 6 125604166 to 125604347 181 CpG island CpG island 18012
D6Mit334 6 125618124 to 125618224 100 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 334
Tssr58997 6 125685689 to 125685699 10 + TSS region transcription start site region 58997
Tssr58998 6 125685707 to 125685736 29 + TSS region transcription start site region 58998
Cpgi18013 6 125690371 to 125690644 273 CpG island CpG island 18013
Tssr58999 6 125690372 to 125690381 9 + TSS region transcription start site region 58999
Tssr59000 6 125690396 to 125690409 13 + TSS region transcription start site region 59000
Ano2 6 125690419 to 126040126 349707 + protein coding gene anoctamin 2
Tssr59001 6 125690615 to 125690624 9 + TSS region transcription start site region 59001
Tssr59002 6 125690651 to 125690662 11 + TSS region transcription start site region 59002
Tssr59003 6 125690668 to 125690679 11 + TSS region transcription start site region 59003
Cpgi18014 6 125711309 to 125711501 192 CpG island CpG island 18014
Tssr59004 6 125711492 to 125711511 19 + TSS region transcription start site region 59004
Gm16303 6 125739406 to 125739795 389 + pseudogene predicted gene 16303
Gm38898 6 125787285 to 125791251 3966 - lncRNA gene predicted gene, 38898
Gm33202 6 125803590 to 125812322 8732 - lncRNA gene predicted gene, 33202
Tssr63318 6 125812292 to 125812324 32 - TSS region transcription start site region 63318
Gm24947 6 125884415 to 125884524 109 + snRNA gene predicted gene, 24947
Ntf3 6 126101412 to 126166791 65379 - protein coding gene neurotrophin 3
2900084I15Rik 6 126138689 to 126139218 529 unclassified gene RIKEN cDNA 2900084I15 gene
D6Mit333 6 126148758 to 126148879 121 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 333
Tssr59005 6 126163277 to 126163286 9 + TSS region transcription start site region 59005
Cpgi18015 6 126163313 to 126164188 875 CpG island CpG island 18015
Cpgi18016 6 126164525 to 126165131 606 CpG island CpG island 18016
Tssr63319 6 126164948 to 126164965 17 - TSS region transcription start site region 63319
Tssr2022 6 126164970 to 126164983 13 - TSS region transcription start site region 2022
Cpgi18017 6 126165736 to 126165902 166 CpG island CpG island 18017
Tssr63320 6 126166726 to 126166761 35 - TSS region transcription start site region 63320
Cpgi18018 6 126166943 to 126167103 160 CpG island CpG island 18018
Gm10415 6 126286649 to 126328686 42037 - lincRNA gene predicted gene 10415
D6Mit256 6 126293091 to 126293215 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 256
Gm33276 6 126330253 to 126365998 35745 - lncRNA gene predicted gene, 33276
Gm29009 6 126331750 to 126334588 2838 + lincRNA gene predicted gene 29009
Gm44431 6 126336867 to 126337279 412 + pseudogene predicted gene, 44431
Tssr63321 6 126365937 to 126365952 15 - TSS region transcription start site region 63321