Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:125161674-125221678

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Iffo1 6 125145241 to 125161782 16541 + protein coding gene intermediate filament family orphan 1
Gapdh 6 125161721 to 125166467 4746 - protein coding gene glyceraldehyde-3-phosphate dehydrogenase
Tssr63245 6 125164089 to 125164106 17 - TSS region transcription start site region 63245
Cpgi17997 6 125164878 to 125165903 1025 CpG island CpG island 17997
Tssr63246 6 125165317 to 125165334 17 - TSS region transcription start site region 63246
Tssr63247 6 125165349 to 125165352 3 - TSS region transcription start site region 63247
Tssr63248 6 125165594 to 125165612 18 - TSS region transcription start site region 63248
Tssr63249 6 125165707 to 125165766 59 - TSS region transcription start site region 63249
Tssr63250 6 125166463 to 125166499 36 - TSS region transcription start site region 63250
Ncapd2 6 125168007 to 125191701 23694 - protein coding gene non-SMC condensin I complex, subunit D2
Tssr63251 6 125168986 to 125169000 14 - TSS region transcription start site region 63251
Tssr63252 6 125170787 to 125170824 37 - TSS region transcription start site region 63252
Tssr63253 6 125172055 to 125172064 9 - TSS region transcription start site region 63253
Gm28967 6 125186361 to 125186641 280 - sense intronic lncRNA gene predicted gene 28967
Scarna10 6 125186361 to 125186431 70 - snoRNA gene small Cajal body-specific RNA 10
Tssr63254 6 125186675 to 125186688 13 - TSS region transcription start site region 63254
Tssr63255 6 125187106 to 125187146 40 - TSS region transcription start site region 63255
Cpgi17998 6 125191290 to 125192667 1377 CpG island CpG island 17998
Tssr63256 6 125191498 to 125191511 13 - TSS region transcription start site region 63256
Tssr63257 6 125191535 to 125191620 85 - TSS region transcription start site region 63257
Tssr63258 6 125191621 to 125191663 42 - TSS region transcription start site region 63258
Tssr2016 6 125191674 to 125191678 4 - TSS region transcription start site region 2016
Tssr58927 6 125191803 to 125191850 47 + TSS region transcription start site region 58927
Tssr63259 6 125192096 to 125192117 21 - TSS region transcription start site region 63259
Tssr58928 6 125192154 to 125192170 16 + TSS region transcription start site region 58928
Tssr58929 6 125192177 to 125192210 33 + TSS region transcription start site region 58929
Mrpl51 6 125192200 to 125194392 2192 + protein coding gene mitochondrial ribosomal protein L51
Mir3098 6 125195792 to 125195878 86 + miRNA gene microRNA 3098
Gm44487 6 125208367 to 125208691 324 - pseudogene predicted gene, 44487
Cpgi17999 6 125215308 to 125216053 745 CpG island CpG island 17999
Tssr58930 6 125215376 to 125215390 14 + TSS region transcription start site region 58930
Tssr58931 6 125215572 to 125215591 19 + TSS region transcription start site region 58931
Vamp1 6 125215581 to 125222306 6725 + protein coding gene vesicle-associated membrane protein 1
Tssr63260 6 125217332 to 125217341 9 - TSS region transcription start site region 63260
Tssr58932 6 125218981 to 125218994 13 + TSS region transcription start site region 58932