Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:124873933-125581860

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352 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
Cd4 6 124864692 to 124888221 23529 - protein coding gene CD4 antigen
Tssr63207 6 124888165 to 124888181 16 - TSS region transcription start site region 63207
Tssr63208 6 124888192 to 124888217 25 - TSS region transcription start site region 63208
Cpgi17979 6 124903730 to 124903988 258 CpG island CpG island 17979
Lag3 6 124904361 to 124911705 7344 - protein coding gene lymphocyte-activation gene 3
Tssr63209 6 124905093 to 124905108 15 - TSS region transcription start site region 63209
Cpgi17980 6 124909822 to 124910608 786 CpG island CpG island 17980
Tssr63210 6 124911623 to 124911628 5 - TSS region transcription start site region 63210
Tssr63211 6 124911636 to 124911676 40 - TSS region transcription start site region 63211
Tssr63212 6 124911680 to 124911699 19 - TSS region transcription start site region 63212
Tssr63213 6 124911745 to 124911758 13 - TSS region transcription start site region 63213
Ptms 6 124913675 to 124917946 4271 - protein coding gene parathymosin
Tssr58857 6 124913676 to 124913696 20 + TSS region transcription start site region 58857
Tssr63214 6 124913858 to 124913886 28 - TSS region transcription start site region 63214
Tssr63215 6 124913945 to 124913955 10 - TSS region transcription start site region 63215
Tssr63216 6 124913969 to 124913994 25 - TSS region transcription start site region 63216
Tssr63217 6 124914006 to 124914021 15 - TSS region transcription start site region 63217
Tssr63218 6 124914035 to 124914044 9 - TSS region transcription start site region 63218
Tssr63219 6 124914053 to 124914057 4 - TSS region transcription start site region 63219
Tssr63220 6 124914061 to 124914065 4 - TSS region transcription start site region 63220
Tssr63221 6 124914091 to 124914107 16 - TSS region transcription start site region 63221
Tssr58858 6 124914105 to 124914127 22 + TSS region transcription start site region 58858
Tssr63222 6 124914111 to 124914130 19 - TSS region transcription start site region 63222
Tssr58859 6 124914146 to 124914163 17 + TSS region transcription start site region 58859
Tssr58860 6 124914178 to 124914211 33 + TSS region transcription start site region 58860
Tssr63223 6 124914186 to 124914199 13 - TSS region transcription start site region 63223
Tssr63224 6 124914206 to 124914213 7 - TSS region transcription start site region 63224
Tssr63225 6 124914222 to 124914234 12 - TSS region transcription start site region 63225
Tssr58861 6 124914395 to 124914434 39 + TSS region transcription start site region 58861
Tssr63226 6 124914436 to 124914458 22 - TSS region transcription start site region 63226
Tssr58862 6 124914626 to 124914669 43 + TSS region transcription start site region 58862
Tssr58863 6 124914670 to 124914686 16 + TSS region transcription start site region 58863
Tssr63227 6 124914676 to 124914694 18 - TSS region transcription start site region 63227
Tssr58864 6 124914904 to 124914928 24 + TSS region transcription start site region 58864
Tssr63228 6 124914939 to 124914975 36 - TSS region transcription start site region 63228
Cpgi17981 6 124915461 to 124915676 215 CpG island CpG island 17981
Tssr63229 6 124915572 to 124915615 43 - TSS region transcription start site region 63229
A230083G16Rik 6 124916863 to 124925753 8890 + antisense lncRNA gene RIKEN cDNA A230083G16 gene
Cpgi17982 6 124916936 to 124918459 1523 CpG island CpG island 17982
Tssr63230 6 124917756 to 124917762 6 - TSS region transcription start site region 63230
Tssr2013 6 124917895 to 124917899 4 - TSS region transcription start site region 2013
Tssr63231 6 124917939 to 124917955 16 - TSS region transcription start site region 63231
Gm38896 6 124920036 to 124920738 702 + lncRNA gene predicted gene, 38896
Tssr63232 6 124920091 to 124920121 30 - TSS region transcription start site region 63232
Cpgi17983 6 124930839 to 124932430 1591 CpG island CpG island 17983
Tssr58865 6 124931378 to 124931425 47 + TSS region transcription start site region 58865
Mlf2 6 124931388 to 124936149 4761 + protein coding gene myeloid leukemia factor 2
Tssr58866 6 124931426 to 124931451 25 + TSS region transcription start site region 58866
Tssr58867 6 124931499 to 124931539 40 + TSS region transcription start site region 58867
Tssr58868 6 124934303 to 124934333 30 + TSS region transcription start site region 58868
Tssr58869 6 124935330 to 124935357 27 + TSS region transcription start site region 58869
Tssr58870 6 124935370 to 124935394 24 + TSS region transcription start site region 58870
Tssr58871 6 124935619 to 124935646 27 + TSS region transcription start site region 58871
Tssr58872 6 124935737 to 124935762 25 + TSS region transcription start site region 58872
Tssr58873 6 124935779 to 124935800 21 + TSS region transcription start site region 58873
Tssr58874 6 124939302 to 124939319 17 + TSS region transcription start site region 58874
Gm32536 6 124951321 to 124951765 444 - pseudogene predicted gene, 32536
Cops7a 6 124958411 to 124965529 7118 - protein coding gene COP9 signalosome subunit 7A
Tssr63233 6 124959464 to 124959578 114 - TSS region transcription start site region 63233
Tssr63234 6 124962425 to 124962438 13 - TSS region transcription start site region 63234
Gm23851 6 124964285 to 124964387 102 + snRNA gene predicted gene, 23851
Cpgi17984 6 124964800 to 124965993 1193 CpG island CpG island 17984
Tssr63235 6 124965231 to 124965243 12 - TSS region transcription start site region 63235
Tssr63236 6 124965248 to 124965275 27 - TSS region transcription start site region 63236
Tssr63237 6 124965403 to 124965458 55 - TSS region transcription start site region 63237
Tssr63238 6 124965469 to 124965483 14 - TSS region transcription start site region 63238
Tssr63239 6 124965485 to 124965543 58 - TSS region transcription start site region 63239
Tssr58875 6 124965578 to 124965590 12 + TSS region transcription start site region 58875
Tssr58876 6 124965620 to 124965633 13 + TSS region transcription start site region 58876
Gm40398 6 124981126 to 124997204 16078 - lncRNA gene predicted gene, 40398
Cpgi17985 6 124996439 to 124997614 1175 CpG island CpG island 17985
Tssr58877 6 124996681 to 124996756 75 + TSS region transcription start site region 58877
Pianp 6 124996720 to 125003096 6376 + protein coding gene PILR alpha associated neural protein
Tssr2014 6 124996767 to 124996781 14 + TSS region transcription start site region 2014
Tssr58878 6 124996791 to 124996842 51 + TSS region transcription start site region 58878
Tssr58879 6 124997047 to 124997059 12 + TSS region transcription start site region 58879
Tssr58880 6 124997062 to 124997082 20 + TSS region transcription start site region 58880
Tssr58881 6 124997090 to 124997112 22 + TSS region transcription start site region 58881
Tssr63240 6 124997389 to 124997416 27 - TSS region transcription start site region 63240
Cpgi17986 6 124999393 to 124999671 278 CpG island CpG island 17986
Tssr58882 6 125002082 to 125002096 14 + TSS region transcription start site region 58882
Tssr58883 6 125002170 to 125002182 12 + TSS region transcription start site region 58883
Tssr58884 6 125002771 to 125002789 18 + TSS region transcription start site region 58884
Tssr58885 6 125002847 to 125002888 41 + TSS region transcription start site region 58885
D6Mit255 6 125006127 to 125006400 273 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 255
Cpgi17987 6 125008656 to 125010127 1471 CpG island CpG island 17987
Tssr58886 6 125008998 to 125009043 45 + TSS region transcription start site region 58886
Tssr58887 6 125009113 to 125009142 29 + TSS region transcription start site region 58887
Zfp384 6 125009162 to 125037870 28708 + protein coding gene zinc finger protein 384
Tssr58888 6 125009232 to 125009253 21 + TSS region transcription start site region 58888
Tssr58889 6 125009261 to 125009317 56 + TSS region transcription start site region 58889
Tssr63241 6 125009601 to 125009637 36 - TSS region transcription start site region 63241
Tssr58890 6 125009665 to 125009717 52 + TSS region transcription start site region 58890
4930557K07Rik 6 125010176 to 125049853 39677 - antisense lncRNA gene RIKEN cDNA 4930557K07 gene
Cpgi17988 6 125039546 to 125039833 287 CpG island CpG island 17988
Gm44597 6 125039816 to 125051542 11726 + unclassified non-coding RNA gene predicted gene 44597
Tssr58891 6 125039830 to 125039859 29 + TSS region transcription start site region 58891
Ing4 6 125039848 to 125049264 9416 + protein coding gene inhibitor of growth family, member 4
Acigg2 6 125048587 to 144315227 19266640 QTL anti COL7 IgG1 antibody 2
Cpgi17989 6 125049752 to 125050098 346 CpG island CpG island 17989
Tssr63242 6 125049843 to 125049858 15 - TSS region transcription start site region 63242
Tssr58892 6 125049903 to 125049947 44 + TSS region transcription start site region 58892
Acrbp 6 125049927 to 125063265 13338 + protein coding gene proacrosin binding protein
Tssr58893 6 125049952 to 125049971 19 + TSS region transcription start site region 58893
Tssr58894 6 125049972 to 125049986 14 + TSS region transcription start site region 58894
Cpgi17990 6 125050469 to 125050638 169 CpG island CpG island 17990
Tssr58895 6 125067673 to 125067686 13 + TSS region transcription start site region 58895
Tssr58896 6 125067688 to 125067699 11 + TSS region transcription start site region 58896
Tssr58897 6 125067913 to 125067942 29 + TSS region transcription start site region 58897
Lpar5 6 125067920 to 125082472 14552 + protein coding gene lysophosphatidic acid receptor 5
Tssr58898 6 125067952 to 125067955 3 + TSS region transcription start site region 58898
Tssr58899 6 125071267 to 125071289 22 + TSS region transcription start site region 58899
Tssr58900 6 125071292 to 125071305 13 + TSS region transcription start site region 58900
Tssr58901 6 125071326 to 125071345 19 + TSS region transcription start site region 58901
Cpgi17991 6 125071385 to 125071639 254 CpG island CpG island 17991
Cpgi17992 6 125081420 to 125082449 1029 CpG island CpG island 17992
Tssr58902 6 125083173 to 125083184 11 + TSS region transcription start site region 58902
Tssr58903 6 125083228 to 125083240 12 + TSS region transcription start site region 58903
Tssr58904 6 125083252 to 125083263 11 + TSS region transcription start site region 58904
Tssr58905 6 125083421 to 125083441 20 + TSS region transcription start site region 58905
2010008C14Rik 6 125083437 to 125084029 592 + unclassified gene RIKEN cDNA 2010008C14 gene
9130201A16Rik 6 125084866 to 125085850 984 unclassified gene RIKEN cDNA 9130201A16 gene
Gm32616 6 125091244 to 125097798 6554 - lncRNA gene predicted gene, 32616
Cpgi17993 6 125095808 to 125097645 1837 CpG island CpG island 17993
Chd4 6 125095986 to 125130591 34605 + protein coding gene chromodomain helicase DNA binding protein 4
Tssr2015 6 125096010 to 125096036 26 + TSS region transcription start site region 2015
Tssr58906 6 125096132 to 125096141 9 + TSS region transcription start site region 58906
Tssr58907 6 125096145 to 125096158 13 + TSS region transcription start site region 58907
Tssr58908 6 125096169 to 125096189 20 + TSS region transcription start site region 58908
Tssr58909 6 125096744 to 125096773 29 + TSS region transcription start site region 58909
Tssr58910 6 125096786 to 125096799 13 + TSS region transcription start site region 58910
Tssr58911 6 125096808 to 125096840 32 + TSS region transcription start site region 58911
Mir7045 6 125097024 to 125097086 62 + miRNA gene microRNA 7045
Tssr58912 6 125097077 to 125097109 32 + TSS region transcription start site region 58912
Tssr58913 6 125100868 to 125100882 14 + TSS region transcription start site region 58913
Tssr58914 6 125103430 to 125103438 8 + TSS region transcription start site region 58914
Tssr58915 6 125113511 to 125113540 29 + TSS region transcription start site region 58915
Tssr58916 6 125113895 to 125113912 17 + TSS region transcription start site region 58916
Gm23751 6 125121724 to 125121859 135 + snoRNA gene predicted gene, 23751
Tssr58917 6 125122470 to 125122504 34 + TSS region transcription start site region 58917
Tssr58918 6 125129863 to 125129872 9 + TSS region transcription start site region 58918
Tssr58919 6 125130470 to 125130473 3 + TSS region transcription start site region 58919
Cpgi17994 6 125131301 to 125132618 1317 CpG island CpG island 17994
Tssr63243 6 125131757 to 125131770 13 - TSS region transcription start site region 63243
Tssr63244 6 125131786 to 125131819 33 - TSS region transcription start site region 63244
Tssr58920 6 125131869 to 125131953 84 + TSS region transcription start site region 58920
Nop2 6 125131909 to 125144753 12844 + protein coding gene NOP2 nucleolar protein
Tssr58921 6 125136677 to 125136681 4 + TSS region transcription start site region 58921
Cpgi17995 6 125145165 to 125146102 937 CpG island CpG island 17995
Tssr58922 6 125145210 to 125145234 24 + TSS region transcription start site region 58922
Tssr58923 6 125145235 to 125145250 15 + TSS region transcription start site region 58923
Iffo1 6 125145241 to 125161782 16541 + protein coding gene intermediate filament family orphan 1
Tssr58924 6 125145259 to 125145278 19 + TSS region transcription start site region 58924
Tssr58925 6 125145295 to 125145298 3 + TSS region transcription start site region 58925
Tssr58926 6 125145400 to 125145413 13 + TSS region transcription start site region 58926
Cpgi17996 6 125148794 to 125148976 182 CpG island CpG island 17996
Gapdh 6 125161721 to 125166467 4746 - protein coding gene glyceraldehyde-3-phosphate dehydrogenase
Tssr63245 6 125164089 to 125164106 17 - TSS region transcription start site region 63245
Cpgi17997 6 125164878 to 125165903 1025 CpG island CpG island 17997
Tssr63246 6 125165317 to 125165334 17 - TSS region transcription start site region 63246
Tssr63247 6 125165349 to 125165352 3 - TSS region transcription start site region 63247
Tssr63248 6 125165594 to 125165612 18 - TSS region transcription start site region 63248
Tssr63249 6 125165707 to 125165766 59 - TSS region transcription start site region 63249
Tssr63250 6 125166463 to 125166499 36 - TSS region transcription start site region 63250
Ncapd2 6 125168007 to 125191701 23694 - protein coding gene non-SMC condensin I complex, subunit D2
Tssr63251 6 125168986 to 125169000 14 - TSS region transcription start site region 63251
Tssr63252 6 125170787 to 125170824 37 - TSS region transcription start site region 63252
Tssr63253 6 125172055 to 125172064 9 - TSS region transcription start site region 63253
Gm28967 6 125186361 to 125186641 280 - sense intronic lncRNA gene predicted gene 28967
Scarna10 6 125186361 to 125186431 70 - snoRNA gene small Cajal body-specific RNA 10
Tssr63254 6 125186675 to 125186688 13 - TSS region transcription start site region 63254
Tssr63255 6 125187106 to 125187146 40 - TSS region transcription start site region 63255
Cpgi17998 6 125191290 to 125192667 1377 CpG island CpG island 17998
Tssr63256 6 125191498 to 125191511 13 - TSS region transcription start site region 63256
Tssr63257 6 125191535 to 125191620 85 - TSS region transcription start site region 63257
Tssr63258 6 125191621 to 125191663 42 - TSS region transcription start site region 63258
Tssr2016 6 125191674 to 125191678 4 - TSS region transcription start site region 2016
Tssr58927 6 125191803 to 125191850 47 + TSS region transcription start site region 58927
Tssr63259 6 125192096 to 125192117 21 - TSS region transcription start site region 63259
Tssr58928 6 125192154 to 125192170 16 + TSS region transcription start site region 58928
Tssr58929 6 125192177 to 125192210 33 + TSS region transcription start site region 58929
Mrpl51 6 125192200 to 125194392 2192 + protein coding gene mitochondrial ribosomal protein L51
Mir3098 6 125195792 to 125195878 86 + miRNA gene microRNA 3098
Gm44487 6 125208367 to 125208691 324 - pseudogene predicted gene, 44487
Cpgi17999 6 125215308 to 125216053 745 CpG island CpG island 17999
Tssr58930 6 125215376 to 125215390 14 + TSS region transcription start site region 58930
Tssr58931 6 125215572 to 125215591 19 + TSS region transcription start site region 58931
Vamp1 6 125215581 to 125222306 6725 + protein coding gene vesicle-associated membrane protein 1
Tssr63260 6 125217332 to 125217341 9 - TSS region transcription start site region 63260
Tssr58932 6 125218981 to 125218994 13 + TSS region transcription start site region 58932
Tssr58933 6 125221724 to 125221735 11 + TSS region transcription start site region 58933
Tssr58934 6 125221825 to 125221841 16 + TSS region transcription start site region 58934
Tssr58935 6 125221889 to 125221903 14 + TSS region transcription start site region 58935
Tapbpl 6 125223933 to 125231860 7927 - protein coding gene TAP binding protein-like
Tssr63261 6 125231075 to 125231079 4 - TSS region transcription start site region 63261
Tssr63262 6 125231139 to 125231173 34 - TSS region transcription start site region 63262
Tssr58936 6 125231255 to 125231285 30 + TSS region transcription start site region 58936
E130112N10Rik 6 125231276 to 125239934 8658 + lncRNA gene RIKEN cDNA E130112N10 gene
Tssr63263 6 125231648 to 125231689 41 - TSS region transcription start site region 63263