Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:117306340-118126343

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm4640 6 117420577 to 117423617 3040 - lincRNA gene predicted gene 4640
Gm6227 6 117472998 to 117473418 420 - pseudogene predicted gene 6227
Tssr62635 6 117473115 to 117473131 16 - TSS region transcription start site region 62635
D6Mit288 6 117489535 to 117489659 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 288
4930477O03Rik 6 117495066 to 117495483 417 unclassified non-coding RNA gene RIKEN cDNA 4930477O03 gene
6820426E19Rik 6 117495235 to 117500077 4842 + lincRNA gene RIKEN cDNA 6820426E19 gene
D6Mit332 6 117518646 to 117518762 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 332
Gm18965 6 117541023 to 117542914 1891 - pseudogene predicted gene, 18965
Gm9946 6 117558835 to 117568244 9409 + lincRNA gene predicted gene 9946
Tssr58445 6 117559694 to 117559700 6 + TSS region transcription start site region 58445
Gm45083 6 117578715 to 117612570 33855 - lincRNA gene predicted gene 45083
Tssr62636 6 117612562 to 117612579 17 - TSS region transcription start site region 62636
Tssr1979 6 117675161 to 117675188 27 - TSS region transcription start site region 1979
1700030F04Rik 6 117679207 to 117751769 72562 - lincRNA gene RIKEN cDNA 1700030F04 gene
Tssr58446 6 117716340 to 117716343 3 + TSS region transcription start site region 58446
Gm7292 6 117716342 to 117718868 2526 + lincRNA gene predicted gene 7292
Gemin6-ps 6 117808720 to 117809220 500 + pseudogene gem nuclear organelle associated protein 6, pseudogene
Cpgi17889 6 117840821 to 117841665 844 CpG island CpG island 17889
Tssr58447 6 117841174 to 117841251 77 + TSS region transcription start site region 58447
Zfp637 6 117841180 to 117845956 4776 + protein coding gene zinc finger protein 637
Tssr58448 6 117841258 to 117841286 28 + TSS region transcription start site region 58448
Tssr58449 6 117861944 to 117861972 28 + TSS region transcription start site region 58449
Cpgi17890 6 117862907 to 117863382 475 CpG island CpG island 17890
Tssr58450 6 117863069 to 117863103 34 + TSS region transcription start site region 58450
Zfp239 6 117863077 to 117872766 9689 + protein coding gene zinc finger protein 239
Cpgi17891 6 117871318 to 117871816 498 CpG island CpG island 17891
Gm38882 6 117878547 to 117884595 6048 + lncRNA gene predicted gene, 38882
Gm38883 6 117878802 to 117881828 3026 - lncRNA gene predicted gene, 38883
Cpgi17892 6 117879081 to 117880110 1029 CpG island CpG island 17892
Tssr62637 6 117879512 to 117879528 16 - TSS region transcription start site region 62637
Tssr58451 6 117879963 to 117879982 19 + TSS region transcription start site region 58451
Tssr58452 6 117879997 to 117880046 49 + TSS region transcription start site region 58452
Tssr62638 6 117891568 to 117891595 27 - TSS region transcription start site region 62638
Gm29509 6 117899201 to 117899521 320 + lincRNA gene predicted gene 29509
Tssr58453 6 117900295 to 117900307 12 + TSS region transcription start site region 58453
Tssr58454 6 117900311 to 117900349 38 + TSS region transcription start site region 58454
Hnrnpf 6 117900340 to 117925622 25282 + protein coding gene heterogeneous nuclear ribonucleoprotein F
Tssr58455 6 117900355 to 117900363 8 + TSS region transcription start site region 58455
Tssr58456 6 117900403 to 117900417 14 + TSS region transcription start site region 58456
Tssr58457 6 117900442 to 117900473 31 + TSS region transcription start site region 58457
4933440N22Rik 6 117905808 to 117907760 1952 - protein coding gene RIKEN cDNA 4933440N22 gene
Cpgi17893 6 117906447 to 117908634 2187 CpG island CpG island 17893
Tssr62639 6 117906494 to 117906502 8 - TSS region transcription start site region 62639
Tssr58458 6 117906720 to 117906726 6 + TSS region transcription start site region 58458
Tssr58459 6 117906755 to 117906801 46 + TSS region transcription start site region 58459
Tssr58460 6 117906809 to 117906863 54 + TSS region transcription start site region 58460
Tssr58461 6 117906897 to 117906922 25 + TSS region transcription start site region 58461
Tssr58462 6 117906936 to 117907008 72 + TSS region transcription start site region 58462
Tssr58463 6 117907025 to 117907029 4 + TSS region transcription start site region 58463
Tssr58464 6 117907071 to 117907093 22 + TSS region transcription start site region 58464
Tssr58465 6 117907102 to 117907153 51 + TSS region transcription start site region 58465
Tssr58466 6 117907173 to 117907184 11 + TSS region transcription start site region 58466
Tssr62640 6 117907661 to 117907671 10 - TSS region transcription start site region 62640
Tssr62641 6 117907695 to 117907733 38 - TSS region transcription start site region 62641
Tssr62642 6 117907753 to 117907761 8 - TSS region transcription start site region 62642
Tssr58467 6 117907776 to 117907786 10 + TSS region transcription start site region 58467
Tssr58468 6 117907795 to 117907832 37 + TSS region transcription start site region 58468
Tssr58469 6 117908770 to 117908774 4 + TSS region transcription start site region 58469
Gm43863 6 117916531 to 117917722 1191 - unclassified gene predicted gene, 43863
Cpgi17894 6 117916540 to 117917700 1160 CpG island CpG island 17894
Tssr1980 6 117916811 to 117916820 9 - TSS region transcription start site region 1980
Tssr58470 6 117916992 to 117917006 14 + TSS region transcription start site region 58470
Tssr58471 6 117917012 to 117917021 9 + TSS region transcription start site region 58471
Tssr58472 6 117917281 to 117917349 68 + TSS region transcription start site region 58472
Tssr58473 6 117917359 to 117917377 18 + TSS region transcription start site region 58473
Tssr58474 6 117922650 to 117922660 10 + TSS region transcription start site region 58474
Tssr58475 6 117926559 to 117926563 4 + TSS region transcription start site region 58475
Fxyd4 6 117933559 to 117937692 4133 - protein coding gene FXYD domain-containing ion transport regulator 4
Gm25535 6 117935469 to 117935593 124 - miRNA gene predicted gene, 25535
Tssr62643 6 117937328 to 117937343 15 - TSS region transcription start site region 62643
Tssr62644 6 117937394 to 117937435 41 - TSS region transcription start site region 62644
Tssr62645 6 117937686 to 117937697 11 - TSS region transcription start site region 62645
Gm38884 6 117984703 to 118008651 23948 + lncRNA gene predicted gene, 38884
Cpgi17895 6 117996966 to 117997549 583 CpG island CpG island 17895
Tssr58476 6 117997077 to 117997100 23 + TSS region transcription start site region 58476
Gm4875 6 117997207 to 117997992 785 + pseudogene predicted gene 4875
Cpgi17896 6 117997740 to 117997990 250 CpG island CpG island 17896
Cpgi17897 6 118010789 to 118012306 1517 CpG island CpG island 17897
Tssr58477 6 118011313 to 118011395 82 + TSS region transcription start site region 58477
Tssr58478 6 118011448 to 118011496 48 + TSS region transcription start site region 58478
Rasgef1a 6 118011475 to 118091546 80071 + protein coding gene RasGEF domain family, member 1A
Tssr1981 6 118011497 to 118011511 14 + TSS region transcription start site region 1981
Tssr58479 6 118054831 to 118054839 8 + TSS region transcription start site region 58479
Tssr58480 6 118058185 to 118058196 11 + TSS region transcription start site region 58480
Cpgi17898 6 118065914 to 118066777 863 CpG island CpG island 17898
Tssr58481 6 118066356 to 118066410 54 + TSS region transcription start site region 58481
Tssr58482 6 118084127 to 118084132 5 + TSS region transcription start site region 58482
Mir7044 6 118085192 to 118085263 71 + miRNA gene microRNA 7044
Csgalnact2 6 118107452 to 118139140 31688 - protein coding gene chondroitin sulfate N-acetylgalactosaminyltransferase 2
Gm23908 6 118111914 to 118112045 131 - snoRNA gene predicted gene, 23908