Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:117215914-118916777

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr62634 6 117299529 to 117299547 18 - TSS region transcription start site region 62634
Gm4640 6 117420577 to 117423617 3040 - lincRNA gene predicted gene 4640
Gm6227 6 117472998 to 117473418 420 - pseudogene predicted gene 6227
Tssr62635 6 117473115 to 117473131 16 - TSS region transcription start site region 62635
D6Mit288 6 117489535 to 117489659 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 288
4930477O03Rik 6 117495066 to 117495483 417 unclassified non-coding RNA gene RIKEN cDNA 4930477O03 gene
6820426E19Rik 6 117495235 to 117500077 4842 + lincRNA gene RIKEN cDNA 6820426E19 gene
D6Mit332 6 117518646 to 117518762 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 332
Gm18965 6 117541023 to 117542914 1891 - pseudogene predicted gene, 18965
Gm9946 6 117558835 to 117568244 9409 + lincRNA gene predicted gene 9946
Tssr58445 6 117559694 to 117559700 6 + TSS region transcription start site region 58445
Gm45083 6 117578715 to 117612570 33855 - lincRNA gene predicted gene 45083
Tssr62636 6 117612562 to 117612579 17 - TSS region transcription start site region 62636
Tssr1979 6 117675161 to 117675188 27 - TSS region transcription start site region 1979
1700030F04Rik 6 117679207 to 117751769 72562 - lincRNA gene RIKEN cDNA 1700030F04 gene
Tssr58446 6 117716340 to 117716343 3 + TSS region transcription start site region 58446
Gm7292 6 117716342 to 117718868 2526 + lincRNA gene predicted gene 7292
Gemin6-ps 6 117808720 to 117809220 500 + pseudogene gem nuclear organelle associated protein 6, pseudogene
Cpgi17889 6 117840821 to 117841665 844 CpG island CpG island 17889
Tssr58447 6 117841174 to 117841251 77 + TSS region transcription start site region 58447
Zfp637 6 117841180 to 117845956 4776 + protein coding gene zinc finger protein 637
Tssr58448 6 117841258 to 117841286 28 + TSS region transcription start site region 58448
Tssr58449 6 117861944 to 117861972 28 + TSS region transcription start site region 58449
Cpgi17890 6 117862907 to 117863382 475 CpG island CpG island 17890
Tssr58450 6 117863069 to 117863103 34 + TSS region transcription start site region 58450
Zfp239 6 117863077 to 117872766 9689 + protein coding gene zinc finger protein 239
Cpgi17891 6 117871318 to 117871816 498 CpG island CpG island 17891
Gm38882 6 117878547 to 117884595 6048 + lncRNA gene predicted gene, 38882
Gm38883 6 117878802 to 117881828 3026 - lncRNA gene predicted gene, 38883
Cpgi17892 6 117879081 to 117880110 1029 CpG island CpG island 17892
Tssr62637 6 117879512 to 117879528 16 - TSS region transcription start site region 62637
Tssr58451 6 117879963 to 117879982 19 + TSS region transcription start site region 58451
Tssr58452 6 117879997 to 117880046 49 + TSS region transcription start site region 58452
Tssr62638 6 117891568 to 117891595 27 - TSS region transcription start site region 62638
Gm29509 6 117899201 to 117899521 320 + lincRNA gene predicted gene 29509
Tssr58453 6 117900295 to 117900307 12 + TSS region transcription start site region 58453
Tssr58454 6 117900311 to 117900349 38 + TSS region transcription start site region 58454
Hnrnpf 6 117900340 to 117925622 25282 + protein coding gene heterogeneous nuclear ribonucleoprotein F
Tssr58455 6 117900355 to 117900363 8 + TSS region transcription start site region 58455
Tssr58456 6 117900403 to 117900417 14 + TSS region transcription start site region 58456
Tssr58457 6 117900442 to 117900473 31 + TSS region transcription start site region 58457
4933440N22Rik 6 117905808 to 117907760 1952 - protein coding gene RIKEN cDNA 4933440N22 gene
Cpgi17893 6 117906447 to 117908634 2187 CpG island CpG island 17893
Tssr62639 6 117906494 to 117906502 8 - TSS region transcription start site region 62639
Tssr58458 6 117906720 to 117906726 6 + TSS region transcription start site region 58458
Tssr58459 6 117906755 to 117906801 46 + TSS region transcription start site region 58459
Tssr58460 6 117906809 to 117906863 54 + TSS region transcription start site region 58460
Tssr58461 6 117906897 to 117906922 25 + TSS region transcription start site region 58461
Tssr58462 6 117906936 to 117907008 72 + TSS region transcription start site region 58462
Tssr58463 6 117907025 to 117907029 4 + TSS region transcription start site region 58463
Tssr58464 6 117907071 to 117907093 22 + TSS region transcription start site region 58464
Tssr58465 6 117907102 to 117907153 51 + TSS region transcription start site region 58465
Tssr58466 6 117907173 to 117907184 11 + TSS region transcription start site region 58466
Tssr62640 6 117907661 to 117907671 10 - TSS region transcription start site region 62640
Tssr62641 6 117907695 to 117907733 38 - TSS region transcription start site region 62641
Tssr62642 6 117907753 to 117907761 8 - TSS region transcription start site region 62642
Tssr58467 6 117907776 to 117907786 10 + TSS region transcription start site region 58467
Tssr58468 6 117907795 to 117907832 37 + TSS region transcription start site region 58468
Tssr58469 6 117908770 to 117908774 4 + TSS region transcription start site region 58469
Gm43863 6 117916531 to 117917722 1191 - unclassified gene predicted gene, 43863
Cpgi17894 6 117916540 to 117917700 1160 CpG island CpG island 17894
Tssr1980 6 117916811 to 117916820 9 - TSS region transcription start site region 1980
Tssr58470 6 117916992 to 117917006 14 + TSS region transcription start site region 58470
Tssr58471 6 117917012 to 117917021 9 + TSS region transcription start site region 58471
Tssr58472 6 117917281 to 117917349 68 + TSS region transcription start site region 58472
Tssr58473 6 117917359 to 117917377 18 + TSS region transcription start site region 58473
Tssr58474 6 117922650 to 117922660 10 + TSS region transcription start site region 58474
Tssr58475 6 117926559 to 117926563 4 + TSS region transcription start site region 58475
Fxyd4 6 117933559 to 117937692 4133 - protein coding gene FXYD domain-containing ion transport regulator 4
Gm25535 6 117935469 to 117935593 124 - miRNA gene predicted gene, 25535
Tssr62643 6 117937328 to 117937343 15 - TSS region transcription start site region 62643
Tssr62644 6 117937394 to 117937435 41 - TSS region transcription start site region 62644
Tssr62645 6 117937686 to 117937697 11 - TSS region transcription start site region 62645
Gm38884 6 117984703 to 118008651 23948 + lncRNA gene predicted gene, 38884
Cpgi17895 6 117996966 to 117997549 583 CpG island CpG island 17895
Tssr58476 6 117997077 to 117997100 23 + TSS region transcription start site region 58476
Gm4875 6 117997207 to 117997992 785 + pseudogene predicted gene 4875
Cpgi17896 6 117997740 to 117997990 250 CpG island CpG island 17896
Cpgi17897 6 118010789 to 118012306 1517 CpG island CpG island 17897
Tssr58477 6 118011313 to 118011395 82 + TSS region transcription start site region 58477
Tssr58478 6 118011448 to 118011496 48 + TSS region transcription start site region 58478
Rasgef1a 6 118011475 to 118091546 80071 + protein coding gene RasGEF domain family, member 1A
Tssr1981 6 118011497 to 118011511 14 + TSS region transcription start site region 1981
Tssr58479 6 118054831 to 118054839 8 + TSS region transcription start site region 58479
Tssr58480 6 118058185 to 118058196 11 + TSS region transcription start site region 58480
Cpgi17898 6 118065914 to 118066777 863 CpG island CpG island 17898
Tssr58481 6 118066356 to 118066410 54 + TSS region transcription start site region 58481
Tssr58482 6 118084127 to 118084132 5 + TSS region transcription start site region 58482
Mir7044 6 118085192 to 118085263 71 + miRNA gene microRNA 7044
Csgalnact2 6 118107452 to 118139140 31688 - protein coding gene chondroitin sulfate N-acetylgalactosaminyltransferase 2
Gm23908 6 118111914 to 118112045 131 - snoRNA gene predicted gene, 23908
Cpgi17899 6 118138716 to 118139521 805 CpG island CpG island 17899
Tssr62646 6 118139045 to 118139070 25 - TSS region transcription start site region 62646
Tssr62647 6 118139094 to 118139158 64 - TSS region transcription start site region 62647
Ret 6 118151745 to 118197718 45973 - protein coding gene ret proto-oncogene
Tssr62648 6 118155333 to 118155352 19 - TSS region transcription start site region 62648
Tssr58483 6 118163066 to 118163079 13 + TSS region transcription start site region 58483
Tssr58484 6 118163090 to 118163103 13 + TSS region transcription start site region 58484
Tssr58485 6 118163117 to 118163122 5 + TSS region transcription start site region 58485
Tssr62649 6 118166437 to 118166440 3 - TSS region transcription start site region 62649
Cpgi17900 6 118196433 to 118197805 1372 CpG island CpG island 17900
Tssr62650 6 118197318 to 118197335 17 - TSS region transcription start site region 62650
Tssr1982 6 118197341 to 118197346 5 - TSS region transcription start site region 1982
Tssr62651 6 118197347 to 118197348 1 - TSS region transcription start site region 62651
Tssr62652 6 118197356 to 118197374 18 - TSS region transcription start site region 62652
Tssr62653 6 118197386 to 118197397 11 - TSS region transcription start site region 62653
Tssr62654 6 118197732 to 118197743 11 - TSS region transcription start site region 62654
Tssr62655 6 118197750 to 118197761 11 - TSS region transcription start site region 62655
Tssr62656 6 118197794 to 118197808 14 - TSS region transcription start site region 62656
Tssr58486 6 118198401 to 118198406 5 + TSS region transcription start site region 58486
1700069P05Rik 6 118246695 to 118248452 1757 - lincRNA gene RIKEN cDNA 1700069P05 gene
Gm30557 6 118261686 to 118264033 2347 + lincRNA gene predicted gene, 30557
Tssr1983 6 118277520 to 118277522 2 - TSS region transcription start site region 1983
D6Mit109 6 118289424 to 118289555 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 109
Gm30498 6 118300168 to 118308384 8216 - lincRNA gene predicted gene, 30498
Tssr58487 6 118348411 to 118348430 19 + TSS region transcription start site region 58487
Tssr62657 6 118350447 to 118350475 28 - TSS region transcription start site region 62657
Tssr1984 6 118374749 to 118374758 9 + TSS region transcription start site region 1984
Bms1 6 118383381 to 118419474 36093 - protein coding gene BMS1, ribosome biogenesis factor
Cpgi17901 6 118419074 to 118419951 877 CpG island CpG island 17901
Tssr62658 6 118419336 to 118419351 15 - TSS region transcription start site region 62658
Tssr62659 6 118419358 to 118419387 29 - TSS region transcription start site region 62659
Tssr62660 6 118419388 to 118419441 53 - TSS region transcription start site region 62660
Zfp248 6 118427319 to 118455506 28187 - protein coding gene zinc finger protein 248
Gm25953 6 118429170 to 118429252 82 + miRNA gene predicted gene, 25953
Gm38885 6 118444798 to 118446249 1451 - lncRNA gene predicted gene, 38885
Cpgi17902 6 118454968 to 118455696 728 CpG island CpG island 17902
Tssr62661 6 118455475 to 118455518 43 - TSS region transcription start site region 62661
Zfp9 6 118461950 to 118479320 17370 - protein coding gene zinc finger protein 9
Cpgi17903 6 118478964 to 118479769 805 CpG island CpG island 17903
Tssr62662 6 118479237 to 118479318 81 - TSS region transcription start site region 62662
Gm18223 6 118486885 to 118487706 821 + pseudogene predicted gene, 18223
Ankrd26 6 118501308 to 118562226 60918 - protein coding gene ankyrin repeat domain 26
Cpgi17904 6 118561721 to 118562565 844 CpG island CpG island 17904
Tssr62663 6 118562204 to 118562216 12 - TSS region transcription start site region 62663
Tssr62664 6 118562226 to 118562280 54 - TSS region transcription start site region 62664
Cacna1c 6 118587240 to 119196418 609178 - protein coding gene calcium channel, voltage-dependent, L type, alpha 1C subunit
Cpgi17905 6 118593643 to 118594041 398 CpG island CpG island 17905
Gm38887 6 118598009 to 118600725 2716 + lncRNA gene predicted gene, 38887
Gm18981 6 118617626 to 118619224 1598 - pseudogene predicted gene, 18981
Tssr62665 6 118637973 to 118637983 10 - TSS region transcription start site region 62665
Tssr62666 6 118658742 to 118658748 6 - TSS region transcription start site region 62666
Tssr62667 6 118748279 to 118748283 4 - TSS region transcription start site region 62667
Gm18008 6 118833065 to 118833611 546 - pseudogene predicted gene, 18008
Gm25905 6 118834900 to 118835000 100 + snRNA gene predicted gene, 25905
1700080F18Rik 6 118846044 to 118852978 6934 lncRNA gene RIKEN cDNA 1700080F18 gene
Tssr62668 6 118861460 to 118861465 5 - TSS region transcription start site region 62668
Tssr58488 6 118880152 to 118880163 11 + TSS region transcription start site region 58488
4931430N09Rik 6 118880158 to 118885543 5385 + lncRNA gene RIKEN cDNA 4931430N09 gene
Tssr58489 6 118880164 to 118880175 11 + TSS region transcription start site region 58489
Tssr62669 6 118883603 to 118883623 20 - TSS region transcription start site region 62669