Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:115993986-116853987

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxnd1 6 115954811 to 115995005 40194 - protein coding gene plexin D1
Cpgi17879 6 115992953 to 115995412 2459 CpG island CpG island 17879
Tssr62543 6 115994828 to 115994857 29 - TSS region transcription start site region 62543
Tssr62544 6 115994885 to 115994888 3 - TSS region transcription start site region 62544
Tssr62545 6 115994929 to 115994932 3 - TSS region transcription start site region 62545
Tssr62546 6 115994939 to 115994945 6 - TSS region transcription start site region 62546
Tssr62547 6 115994953 to 115995010 57 - TSS region transcription start site region 62547
Tssr58347 6 115995097 to 115995113 16 + TSS region transcription start site region 58347
Tssr58348 6 115995123 to 115995158 35 + TSS region transcription start site region 58348
Tssr58349 6 115995389 to 115995432 43 + TSS region transcription start site region 58349
Tmcc1 6 116018611 to 116193374 174763 - protein coding gene transmembrane and coiled coil domains 1
Tssr62548 6 116073037 to 116073077 40 - TSS region transcription start site region 62548
Tssr62549 6 116073121 to 116073148 27 - TSS region transcription start site region 62549
Tssr62550 6 116073149 to 116073163 14 - TSS region transcription start site region 62550
Tssr58350 6 116073829 to 116073832 3 + TSS region transcription start site region 58350
Tssr62551 6 116101811 to 116101825 14 - TSS region transcription start site region 62551
Tssr62552 6 116101829 to 116101838 9 - TSS region transcription start site region 62552
Tssr62553 6 116107504 to 116107551 47 - TSS region transcription start site region 62553
Tssr62554 6 116107561 to 116107577 16 - TSS region transcription start site region 62554
Gm20404 6 116107650 to 116127493 19843 + antisense lncRNA gene predicted gene 20404
Tssr62555 6 116107849 to 116107881 32 - TSS region transcription start site region 62555
Tssr62556 6 116109845 to 116109871 26 - TSS region transcription start site region 62556
Tssr62557 6 116131849 to 116131884 35 - TSS region transcription start site region 62557
Tssr62558 6 116133848 to 116133893 45 - TSS region transcription start site region 62558
Tssr62559 6 116133896 to 116133908 12 - TSS region transcription start site region 62559
Tssr58351 6 116137417 to 116137457 40 + TSS region transcription start site region 58351
D6Mit150.1 6 116154994 to 116155133 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 150.1
Bmd8 6 116155128 to 116155267 139 QTL bone mineral density 8
D6Mit150 6 116155128 to 116155267 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 150
Igf1sl1 6 116155267 to 52161713 -63993554 QTL IGF-1 serum levels 1
Tssr58352 6 116173628 to 116173635 7 + TSS region transcription start site region 58352
Gm8203 6 116173737 to 116174123 386 + pseudogene predicted pseudogene 8203
Tssr58353 6 116173785 to 116173804 19 + TSS region transcription start site region 58353
Tssr62560 6 116181517 to 116181521 4 - TSS region transcription start site region 62560
Cpgi17880 6 116192685 to 116194073 1388 CpG island CpG island 17880
Tssr62561 6 116193426 to 116193501 75 - TSS region transcription start site region 62561
Gm8213 6 116195418 to 116195858 440 - pseudogene predicted pseudogene 8213
9530062K07Rik 6 116199410 to 116207993 8583 - bidirectional promoter lncRNA gene RIKEN cDNA 9530062K07 gene
Cpgi17881 6 116207754 to 116208587 833 CpG island CpG island 17881
Washc2 6 116208027 to 116262671 54644 + protein coding gene WASH complex subunit 2`
Tssr58354 6 116208030 to 116208114 84 + TSS region transcription start site region 58354
Tssr58355 6 116208116 to 116208130 14 + TSS region transcription start site region 58355
Tssr58356 6 116208185 to 116208197 12 + TSS region transcription start site region 58356
Tssr58357 6 116226258 to 116226264 6 + TSS region transcription start site region 58357
Tssr58358 6 116226966 to 116226980 14 + TSS region transcription start site region 58358
Gm44103 6 116260434 to 116264095 3661 - unclassified gene predicted gene, 44103
Cpgi17882 6 116263899 to 116264636 737 CpG island CpG island 17882
Tssr62562 6 116264043 to 116264057 14 - TSS region transcription start site region 62562
Tssr58359 6 116264186 to 116264225 39 + TSS region transcription start site region 58359
Zfand4 6 116264222 to 116330302 66080 + protein coding gene zinc finger, AN1-type domain 4
Tssr58360 6 116264227 to 116264266 39 + TSS region transcription start site region 58360
Tssr58361 6 116264273 to 116264282 9 + TSS region transcription start site region 58361
Tssr58362 6 116286552 to 116286582 30 + TSS region transcription start site region 58362
Gm44957 6 116335233 to 116337949 2716 - unclassified non-coding RNA gene predicted gene 44957
Cpgi17883 6 116337721 to 116338537 816 CpG island CpG island 17883
Tssr58363 6 116337871 to 116337898 27 + TSS region transcription start site region 58363
Tssr58364 6 116337900 to 116337911 11 + TSS region transcription start site region 58364
Tssr58365 6 116337999 to 116338010 11 + TSS region transcription start site region 58365
Tssr58366 6 116338013 to 116338083 70 + TSS region transcription start site region 58366
March8 6 116338024 to 116409540 71516 + protein coding gene membrane-associated ring finger (C3HC4) 8
Tssr58367 6 116338300 to 116338332 32 + TSS region transcription start site region 58367
Tssr58368 6 116338373 to 116338392 19 + TSS region transcription start site region 58368
Tssr58369 6 116350902 to 116350937 35 + TSS region transcription start site region 58369
Tssr58370 6 116354869 to 116354870 1 + TSS region transcription start site region 58370
Tssr58371 6 116358956 to 116358973 17 + TSS region transcription start site region 58371
Gm23527 6 116371939 to 116372068 129 - snoRNA gene predicted gene, 23527
Gm44237 6 116389462 to 116390397 935 + unclassified gene predicted gene, 44237
Alox5 6 116410077 to 116461178 51101 - protein coding gene arachidonate 5-lipoxygenase
Tssr62563 6 116414044 to 116414053 9 - TSS region transcription start site region 62563
Gm38880 6 116420396 to 116448276 27880 + lncRNA gene predicted gene, 38880
Tssr62564 6 116423986 to 116423987 1 - TSS region transcription start site region 62564
Tssr58372 6 116440086 to 116440091 5 + TSS region transcription start site region 58372
Tssr1975 6 116458865 to 116458902 37 - TSS region transcription start site region 1975
Tssr1976 6 116459404 to 116459411 7 + TSS region transcription start site region 1976
Tssr1977 6 116459435 to 116459471 36 + TSS region transcription start site region 1977
Cpgi17884 6 116460624 to 116461264 640 CpG island CpG island 17884
Tssr62565 6 116461120 to 116461140 20 - TSS region transcription start site region 62565
Tssr62566 6 116461151 to 116461172 21 - TSS region transcription start site region 62566
Gm44076 6 116472854 to 116473373 519 + pseudogene predicted gene, 44076
Olfr211 6 116489117 to 116494540 5423 + protein coding gene olfactory receptor 211
Olfr212 6 116506516 to 116517965 11449 + protein coding gene olfactory receptor 212
Olfr213 6 116540455 to 116541438 983 + protein coding gene olfactory receptor 213
Gm5580 6 116551141 to 116552502 1361 + protein coding gene predicted pseudogene 5580
Olfr214 6 116556427 to 116557389 962 + protein coding gene olfactory receptor 214
Olfr215 6 116582012 to 116582944 932 - protein coding gene olfactory receptor 215
Gm18485 6 116621472 to 116622528 1056 - pseudogene predicted gene, 18485
Zfp422 6 116624016 to 116628999 4983 - protein coding gene zinc finger protein 422
Cpgi17885 6 116628414 to 116629209 795 CpG island CpG island 17885
Tssr62567 6 116628921 to 116628934 13 - TSS region transcription start site region 62567
Tssr62568 6 116628955 to 116629004 49 - TSS region transcription start site region 62568
Tssr62569 6 116629007 to 116629014 7 - TSS region transcription start site region 62569
Tssr58373 6 116629076 to 116629120 44 + TSS region transcription start site region 58373
Tssr62570 6 116629156 to 116629161 5 - TSS region transcription start site region 62570
Gm44154 6 116630222 to 116632945 2723 + unclassified gene predicted gene, 44154
Rassf4 6 116632995 to 116673836 40841 - protein coding gene Ras association (RalGDS/AF-6) domain family member 4
Tssr62571 6 116633305 to 116633316 11 - TSS region transcription start site region 62571
Tssr62572 6 116633344 to 116633355 11 - TSS region transcription start site region 62572
Tssr62573 6 116633409 to 116633415 6 - TSS region transcription start site region 62573
Tssr62574 6 116633567 to 116633595 28 - TSS region transcription start site region 62574
Tssr62575 6 116633814 to 116633828 14 - TSS region transcription start site region 62575
Tssr62576 6 116634942 to 116634960 18 - TSS region transcription start site region 62576
Tssr62577 6 116636946 to 116636968 22 - TSS region transcription start site region 62577
Tssr62578 6 116637322 to 116637338 16 - TSS region transcription start site region 62578
Tssr62579 6 116637819 to 116637850 31 - TSS region transcription start site region 62579
Tssr62580 6 116637872 to 116637894 22 - TSS region transcription start site region 62580
Tssr62581 6 116640317 to 116640343 26 - TSS region transcription start site region 62581
Tssr62582 6 116641453 to 116641482 29 - TSS region transcription start site region 62582
Tssr62583 6 116641731 to 116641747 16 - TSS region transcription start site region 62583
Tssr62584 6 116645155 to 116645181 26 - TSS region transcription start site region 62584
Tssr62585 6 116645224 to 116645247 23 - TSS region transcription start site region 62585
Mir7043 6 116645978 to 116646047 69 - miRNA gene microRNA 7043
Tssr62586 6 116647656 to 116647667 11 - TSS region transcription start site region 62586
Tssr62587 6 116647781 to 116647805 24 - TSS region transcription start site region 62587
Tssr62588 6 116647833 to 116647850 17 - TSS region transcription start site region 62588
Tssr62589 6 116647865 to 116647868 3 - TSS region transcription start site region 62589
Tssr62590 6 116647871 to 116647890 19 - TSS region transcription start site region 62590
Tssr58374 6 116650613 to 116650618 5 + TSS region transcription start site region 58374
Tssr58375 6 116650623 to 116650628 5 + TSS region transcription start site region 58375
Tssr1978 6 116650632 to 116650641 9 + TSS region transcription start site region 1978
Tssr58376 6 116650661 to 116650666 5 + TSS region transcription start site region 58376
Tssr58377 6 116650674 to 116650690 16 + TSS region transcription start site region 58377
Depp1 6 116650684 to 116652847 2163 + protein coding gene DEPP1 autophagy regulator
Tssr58378 6 116650725 to 116650729 4 + TSS region transcription start site region 58378
Tssr58379 6 116651779 to 116651796 17 + TSS region transcription start site region 58379
Tssr58380 6 116651876 to 116651885 9 + TSS region transcription start site region 58380
Tssr58381 6 116652230 to 116652263 33 + TSS region transcription start site region 58381
Tssr62591 6 116655473 to 116655496 23 - TSS region transcription start site region 62591
Tssr62592 6 116656328 to 116656341 13 - TSS region transcription start site region 62592
Tssr62593 6 116656495 to 116656507 12 - TSS region transcription start site region 62593
Tssr62594 6 116656736 to 116656768 32 - TSS region transcription start site region 62594
Tssr62595 6 116656937 to 116656987 50 - TSS region transcription start site region 62595
Tssr62596 6 116657145 to 116657187 42 - TSS region transcription start site region 62596
Tssr62597 6 116657198 to 116657223 25 - TSS region transcription start site region 62597
Tssr62598 6 116657360 to 116657409 49 - TSS region transcription start site region 62598
Tssr62599 6 116657413 to 116657453 40 - TSS region transcription start site region 62599
Tssr62600 6 116657488 to 116657514 26 - TSS region transcription start site region 62600
Tssr62601 6 116657553 to 116657567 14 - TSS region transcription start site region 62601
Tssr62602 6 116659510 to 116659528 18 - TSS region transcription start site region 62602
D6Mit115 6 116664897 to 116665031 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 115
Ath37 6 116664897 to 128519025 11854128 QTL atherosclerosis 37
Tssr62603 6 116665951 to 116665963 12 - TSS region transcription start site region 62603
Tssr58382 6 116666339 to 116666361 22 + TSS region transcription start site region 58382
Tssr62604 6 116668367 to 116668391 24 - TSS region transcription start site region 62604
Tssr62605 6 116668401 to 116668415 14 - TSS region transcription start site region 62605
Tssr58383 6 116669385 to 116669398 13 + TSS region transcription start site region 58383
Tssr58384 6 116669423 to 116669467 44 + TSS region transcription start site region 58384
Tssr62606 6 116671407 to 116671430 23 - TSS region transcription start site region 62606
Tssr58385 6 116671545 to 116671551 6 + TSS region transcription start site region 58385
Tssr58386 6 116671794 to 116671838 44 + TSS region transcription start site region 58386
Tssr62607 6 116672439 to 116672467 28 - TSS region transcription start site region 62607
Cpgi17886 6 116673459 to 116674252 793 CpG island CpG island 17886
Tssr62608 6 116673771 to 116673789 18 - TSS region transcription start site region 62608
Tssr62609 6 116673790 to 116673853 63 - TSS region transcription start site region 62609
Tssr58387 6 116673912 to 116673954 42 + TSS region transcription start site region 58387
Tmem72 6 116691539 to 116716981 25442 - protein coding gene transmembrane protein 72
Tssr62610 6 116716626 to 116716662 36 - TSS region transcription start site region 62610
Tssr62611 6 116716719 to 116716734 15 - TSS region transcription start site region 62611
Tssr62612 6 116716737 to 116716770 33 - TSS region transcription start site region 62612
Tssr62613 6 116716888 to 116716923 35 - TSS region transcription start site region 62613
Tssr62614 6 116735331 to 116735347 16 - TSS region transcription start site region 62614
Tssr62615 6 116735357 to 116735375 18 - TSS region transcription start site region 62615
Tssr62616 6 116735388 to 116735399 11 - TSS region transcription start site region 62616
Gm22882 6 116765529 to 116765652 123 - snoRNA gene predicted gene, 22882
Gm36788 6 116771713 to 116775339 3626 - lncRNA gene predicted gene, 36788
Gm36873 6 116794465 to 116860522 66057 + lncRNA gene predicted gene, 36873