Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:115675588-116195596

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Raf1 6 115618573 to 115676635 58062 - protein coding gene v-raf-leukemia viral oncogene 1
Cpgi17873 6 115675680 to 115677067 1387 CpG island CpG island 17873
Tssr62522 6 115675871 to 115675887 16 - TSS region transcription start site region 62522
Tssr58320 6 115675944 to 115675956 12 + TSS region transcription start site region 58320
D830050J10Rik 6 115675968 to 115677780 1812 + bidirectional promoter lncRNA gene RIKEN cDNA D830050J10 gene
Tssr58321 6 115675983 to 115676004 21 + TSS region transcription start site region 58321
Tssr62523 6 115676472 to 115676578 106 - TSS region transcription start site region 62523
Tssr62524 6 115676601 to 115676618 17 - TSS region transcription start site region 62524
Tssr62525 6 115676623 to 115676642 19 - TSS region transcription start site region 62525
Tssr58322 6 115676714 to 115676754 40 + TSS region transcription start site region 58322
Tssr62526 6 115685450 to 115685498 48 - TSS region transcription start site region 62526
Tssr1970 6 115687862 to 115687864 2 + TSS region transcription start site region 1970
Gm38879 6 115701150 to 115705539 4389 + lncRNA gene predicted gene, 38879
D6Mit62b 6 115717516 to 115717805 289 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62b
Bhr5 6 115717516 to 132601187 16883671 QTL bronchial hyperresponsiveness 5
D6Mit62a 6 115717516 to 115717715 199 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62a
Lith6 6 115717516 to 115717715 199 QTL lithogenic gene 6
Gm24008 6 115723695 to 115723832 137 - snoRNA gene predicted gene, 24008
Tmem40 6 115729131 to 115762410 33279 - protein coding gene transmembrane protein 40
Tssr62527 6 115731077 to 115731090 13 - TSS region transcription start site region 62527
Tssr62528 6 115731098 to 115731115 17 - TSS region transcription start site region 62528
Tssr58323 6 115731962 to 115731976 14 + TSS region transcription start site region 58323
Gm27853 6 115750366 to 115750615 249 - unclassified non-coding RNA gene predicted gene, 27853
Tssr62529 6 115758974 to 115759000 26 - TSS region transcription start site region 62529
Tssr62530 6 115759004 to 115759020 16 - TSS region transcription start site region 62530
Tssr62531 6 115759021 to 115759036 15 - TSS region transcription start site region 62531
Tssr1971 6 115759726 to 115759732 6 + TSS region transcription start site region 1971
Tssr58324 6 115762254 to 115762298 44 + TSS region transcription start site region 58324
Tssr62532 6 115762322 to 115762344 22 - TSS region transcription start site region 62532
Tssr62533 6 115762346 to 115762380 34 - TSS region transcription start site region 62533
Gm44180 6 115769920 to 115770327 407 - pseudogene predicted gene, 44180
Cand2 6 115774557 to 115805555 30998 + protein coding gene cullin-associated and neddylation-dissociated 2 (putative)
Cpgi17874 6 115774559 to 115774724 165 CpG island CpG island 17874
Tssr58325 6 115774564 to 115774609 45 + TSS region transcription start site region 58325
Mir7660 6 115775657 to 115775719 62 + miRNA gene microRNA 7660
Cpgi17875 6 115792065 to 115792654 589 CpG island CpG island 17875
Tssr1972 6 115792928 to 115792967 39 + TSS region transcription start site region 1972
Cpgi17876 6 115792935 to 115793197 262 CpG island CpG island 17876
Rpl32 6 115805514 to 115808743 3229 - protein coding gene ribosomal protein L32
Snora7a 6 115807975 to 115808103 128 - snoRNA gene small nucleolar RNA, H/ACA box 7A
Cpgi17877 6 115808031 to 115808838 807 CpG island CpG island 17877
Tssr62534 6 115808736 to 115808754 18 - TSS region transcription start site region 62534
Tssr62535 6 115808765 to 115808779 14 - TSS region transcription start site region 62535
Efcab12 6 115810729 to 115838412 27683 - protein coding gene EF-hand calcium binding domain 12
Gm44206 6 115824499 to 115842525 18026 + antisense lncRNA gene predicted gene, 44206
Tssr62536 6 115838183 to 115838199 16 - TSS region transcription start site region 62536
Tssr62537 6 115838203 to 115838223 20 - TSS region transcription start site region 62537
Mbd4 6 115840697 to 115853371 12674 - protein coding gene methyl-CpG binding domain protein 4
Tssr58326 6 115852999 to 115853035 36 + TSS region transcription start site region 58326
Cpgi17878 6 115853086 to 115853908 822 CpG island CpG island 17878
Tssr62538 6 115853299 to 115853343 44 - TSS region transcription start site region 62538
Tssr62539 6 115853346 to 115853389 43 - TSS region transcription start site region 62539
Ift122 6 115853470 to 115926699 73229 + protein coding gene intraflagellar transport 122
Tssr58327 6 115853548 to 115853598 50 + TSS region transcription start site region 58327
Tssr58328 6 115853600 to 115853615 15 + TSS region transcription start site region 58328
Tssr58329 6 115887212 to 115887226 14 + TSS region transcription start site region 58329
Tssr58330 6 115915786 to 115915845 59 + TSS region transcription start site region 58330
Rho 6 115931748 to 115940036 8288 + protein coding gene rhodopsin
Chab3 6 115931748 to 115940036 8288 QTL cholesterol absorption 3
Tssr58331 6 115931855 to 115931858 3 + TSS region transcription start site region 58331
Tssr58332 6 115931897 to 115931919 22 + TSS region transcription start site region 58332
Tssr58333 6 115931922 to 115931937 15 + TSS region transcription start site region 58333
Tssr58334 6 115931938 to 115931963 25 + TSS region transcription start site region 58334
Tssr58335 6 115931964 to 115931978 14 + TSS region transcription start site region 58335
Tssr1973 6 115932156 to 115932174 18 + TSS region transcription start site region 1973
D6Mit44 6 115933269 to 115933416 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 44
Tssr58336 6 115933938 to 115933949 11 + TSS region transcription start site region 58336
Tssr58337 6 115933982 to 115933990 8 + TSS region transcription start site region 58337
Tssr58338 6 115933993 to 115934001 8 + TSS region transcription start site region 58338
Tssr58339 6 115934349 to 115934378 29 + TSS region transcription start site region 58339
Tssr58340 6 115935034 to 115935045 11 + TSS region transcription start site region 58340
Tssr58341 6 115935118 to 115935128 10 + TSS region transcription start site region 58341
Tssr58342 6 115935136 to 115935148 12 + TSS region transcription start site region 58342
Tssr1974 6 115935511 to 115935516 5 + TSS region transcription start site region 1974
Tssr62540 6 115935529 to 115935550 21 - TSS region transcription start site region 62540
Tssr58343 6 115935588 to 115935596 8 + TSS region transcription start site region 58343
Gm43866 6 115935688 to 115936526 838 - unclassified gene predicted gene, 43866
Tssr58344 6 115944936 to 115944943 7 + TSS region transcription start site region 58344
H1foo 6 115944938 to 115950236 5298 + protein coding gene H1 histone family, member O, oocyte-specific
Plxnd1 6 115954811 to 115995005 40194 - protein coding gene plexin D1
Tssr62541 6 115967483 to 115967489 6 - TSS region transcription start site region 62541
Tssr58345 6 115989287 to 115989308 21 + TSS region transcription start site region 58345
Tssr58346 6 115989989 to 115990000 11 + TSS region transcription start site region 58346
Tssr62542 6 115991631 to 115991667 36 - TSS region transcription start site region 62542
Cpgi17879 6 115992953 to 115995412 2459 CpG island CpG island 17879
Tssr62543 6 115994828 to 115994857 29 - TSS region transcription start site region 62543
Tssr62544 6 115994885 to 115994888 3 - TSS region transcription start site region 62544
Tssr62545 6 115994929 to 115994932 3 - TSS region transcription start site region 62545
Tssr62546 6 115994939 to 115994945 6 - TSS region transcription start site region 62546
Tssr62547 6 115994953 to 115995010 57 - TSS region transcription start site region 62547
Tssr58347 6 115995097 to 115995113 16 + TSS region transcription start site region 58347
Tssr58348 6 115995123 to 115995158 35 + TSS region transcription start site region 58348
Tssr58349 6 115995389 to 115995432 43 + TSS region transcription start site region 58349
Tmcc1 6 116018611 to 116193374 174763 - protein coding gene transmembrane and coiled coil domains 1
Tssr62548 6 116073037 to 116073077 40 - TSS region transcription start site region 62548
Tssr62549 6 116073121 to 116073148 27 - TSS region transcription start site region 62549
Tssr62550 6 116073149 to 116073163 14 - TSS region transcription start site region 62550
Tssr58350 6 116073829 to 116073832 3 + TSS region transcription start site region 58350
Tssr62551 6 116101811 to 116101825 14 - TSS region transcription start site region 62551
Tssr62552 6 116101829 to 116101838 9 - TSS region transcription start site region 62552
Tssr62553 6 116107504 to 116107551 47 - TSS region transcription start site region 62553
Tssr62554 6 116107561 to 116107577 16 - TSS region transcription start site region 62554
Gm20404 6 116107650 to 116127493 19843 + antisense lncRNA gene predicted gene 20404
Tssr62555 6 116107849 to 116107881 32 - TSS region transcription start site region 62555
Tssr62556 6 116109845 to 116109871 26 - TSS region transcription start site region 62556
Tssr62557 6 116131849 to 116131884 35 - TSS region transcription start site region 62557
Tssr62558 6 116133848 to 116133893 45 - TSS region transcription start site region 62558
Tssr62559 6 116133896 to 116133908 12 - TSS region transcription start site region 62559
Tssr58351 6 116137417 to 116137457 40 + TSS region transcription start site region 58351
D6Mit150.1 6 116154994 to 116155133 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 150.1
Bmd8 6 116155128 to 116155267 139 QTL bone mineral density 8
D6Mit150 6 116155128 to 116155267 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 150
Igf1sl1 6 116155267 to 52161713 -63993554 QTL IGF-1 serum levels 1
Tssr58352 6 116173628 to 116173635 7 + TSS region transcription start site region 58352
Gm8203 6 116173737 to 116174123 386 + pseudogene predicted pseudogene 8203
Tssr58353 6 116173785 to 116173804 19 + TSS region transcription start site region 58353
Tssr62560 6 116181517 to 116181521 4 - TSS region transcription start site region 62560
Cpgi17880 6 116192685 to 116194073 1388 CpG island CpG island 17880
Tssr62561 6 116193426 to 116193501 75 - TSS region transcription start site region 62561
Gm8213 6 116195418 to 116195858 440 - pseudogene predicted pseudogene 8213