Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:115657346-115867380

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Raf1 6 115618573 to 115676635 58062 - protein coding gene v-raf-leukemia viral oncogene 1
Tssr62521 6 115661731 to 115661749 18 - TSS region transcription start site region 62521
Tssr58319 6 115666952 to 115666970 18 + TSS region transcription start site region 58319
Cpgi17873 6 115675680 to 115677067 1387 CpG island CpG island 17873
Tssr62522 6 115675871 to 115675887 16 - TSS region transcription start site region 62522
Tssr58320 6 115675944 to 115675956 12 + TSS region transcription start site region 58320
D830050J10Rik 6 115675968 to 115677780 1812 + bidirectional promoter lncRNA gene RIKEN cDNA D830050J10 gene
Tssr58321 6 115675983 to 115676004 21 + TSS region transcription start site region 58321
Tssr62523 6 115676472 to 115676578 106 - TSS region transcription start site region 62523
Tssr62524 6 115676601 to 115676618 17 - TSS region transcription start site region 62524
Tssr62525 6 115676623 to 115676642 19 - TSS region transcription start site region 62525
Tssr58322 6 115676714 to 115676754 40 + TSS region transcription start site region 58322
Tssr62526 6 115685450 to 115685498 48 - TSS region transcription start site region 62526
Tssr1970 6 115687862 to 115687864 2 + TSS region transcription start site region 1970
Gm38879 6 115701150 to 115705539 4389 + lncRNA gene predicted gene, 38879
Bhr5 6 115717516 to 132601187 16883671 QTL bronchial hyperresponsiveness 5
Lith6 6 115717516 to 115717715 199 QTL lithogenic gene 6
D6Mit62a 6 115717516 to 115717715 199 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62a
D6Mit62b 6 115717516 to 115717805 289 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62b
Gm24008 6 115723695 to 115723832 137 - snoRNA gene predicted gene, 24008
Tmem40 6 115729131 to 115762410 33279 - protein coding gene transmembrane protein 40
Tssr62527 6 115731077 to 115731090 13 - TSS region transcription start site region 62527
Tssr62528 6 115731098 to 115731115 17 - TSS region transcription start site region 62528
Tssr58323 6 115731962 to 115731976 14 + TSS region transcription start site region 58323
Gm27853 6 115750366 to 115750615 249 - unclassified non-coding RNA gene predicted gene, 27853
Tssr62529 6 115758974 to 115759000 26 - TSS region transcription start site region 62529
Tssr62530 6 115759004 to 115759020 16 - TSS region transcription start site region 62530
Tssr62531 6 115759021 to 115759036 15 - TSS region transcription start site region 62531
Tssr1971 6 115759726 to 115759732 6 + TSS region transcription start site region 1971
Tssr58324 6 115762254 to 115762298 44 + TSS region transcription start site region 58324
Tssr62532 6 115762322 to 115762344 22 - TSS region transcription start site region 62532
Tssr62533 6 115762346 to 115762380 34 - TSS region transcription start site region 62533
Gm44180 6 115769920 to 115770327 407 - pseudogene predicted gene, 44180
Cand2 6 115774557 to 115805555 30998 + protein coding gene cullin-associated and neddylation-dissociated 2 (putative)
Cpgi17874 6 115774559 to 115774724 165 CpG island CpG island 17874
Tssr58325 6 115774564 to 115774609 45 + TSS region transcription start site region 58325
Mir7660 6 115775657 to 115775719 62 + miRNA gene microRNA 7660
Cpgi17875 6 115792065 to 115792654 589 CpG island CpG island 17875
Tssr1972 6 115792928 to 115792967 39 + TSS region transcription start site region 1972
Cpgi17876 6 115792935 to 115793197 262 CpG island CpG island 17876
Rpl32 6 115805514 to 115808743 3229 - protein coding gene ribosomal protein L32
Snora7a 6 115807975 to 115808103 128 - snoRNA gene small nucleolar RNA, H/ACA box 7A
Cpgi17877 6 115808031 to 115808838 807 CpG island CpG island 17877
Tssr62534 6 115808736 to 115808754 18 - TSS region transcription start site region 62534
Tssr62535 6 115808765 to 115808779 14 - TSS region transcription start site region 62535
Efcab12 6 115810729 to 115838412 27683 - protein coding gene EF-hand calcium binding domain 12
Gm44206 6 115824499 to 115842525 18026 + antisense lncRNA gene predicted gene, 44206
Tssr62536 6 115838183 to 115838199 16 - TSS region transcription start site region 62536
Tssr62537 6 115838203 to 115838223 20 - TSS region transcription start site region 62537
Mbd4 6 115840697 to 115853371 12674 - protein coding gene methyl-CpG binding domain protein 4
Tssr58326 6 115852999 to 115853035 36 + TSS region transcription start site region 58326
Cpgi17878 6 115853086 to 115853908 822 CpG island CpG island 17878
Tssr62538 6 115853299 to 115853343 44 - TSS region transcription start site region 62538
Tssr62539 6 115853346 to 115853389 43 - TSS region transcription start site region 62539
Ift122 6 115853470 to 115926699 73229 + protein coding gene intraflagellar transport 122
Tssr58327 6 115853548 to 115853598 50 + TSS region transcription start site region 58327
Tssr58328 6 115853600 to 115853615 15 + TSS region transcription start site region 58328