Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:113493842-114292613

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
ssl 6 100057020 to 114282207 14225187 heritable phenotypic marker small swaying lethal
Prrt3 6 113493639 to 113501931 8292 - protein coding gene proline-rich transmembrane protein 3
Cpgi17847 6 113494216 to 113495458 1242 CpG island CpG island 17847
Cpgi17848 6 113501646 to 113502113 467 CpG island CpG island 17848
Tssr62455 6 113501877 to 113501949 72 - TSS region transcription start site region 62455
Tssr62456 6 113501950 to 113501963 13 - TSS region transcription start site region 62456
Emc3 6 113514887 to 113531638 16751 - protein coding gene ER membrane protein complex subunit 3
Gm23365 6 113528550 to 113528674 124 - miRNA gene predicted gene, 23365
Cpgi17849 6 113531277 to 113531805 528 CpG island CpG island 17849
Tssr62457 6 113531501 to 113531512 11 - TSS region transcription start site region 62457
Tssr62458 6 113531575 to 113531667 92 - TSS region transcription start site region 62458
Tssr58227 6 113531675 to 113531721 46 + TSS region transcription start site region 58227
Fancd2 6 113531682 to 113597017 65335 + protein coding gene Fanconi anemia, complementation group D2
Tssr58228 6 113537810 to 113537811 1 + TSS region transcription start site region 58228
Tssr1959 6 113544099 to 113544109 10 + TSS region transcription start site region 1959
D6Mit11 6 113544509 to 113544602 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 11
Mnic2 6 113544602 to 86806805 -26737797 QTL macronutrient intake, carbohydrate 2
Gm44232 6 113564641 to 113564865 224 - pseudogene predicted gene, 44232
Gm46971 6 113575770 to 113577013 1243 + lncRNA gene predicted gene, 46971
Fancd2os 6 113596761 to 113600715 3954 - protein coding gene Fancd2 opposite strand
Tssr62459 6 113600626 to 113600643 17 - TSS region transcription start site region 62459
Tssr62460 6 113600645 to 113600653 8 - TSS region transcription start site region 62460
Tssr58229 6 113600758 to 113600764 6 + TSS region transcription start site region 58229
Cpgi17850 6 113604375 to 113605357 982 CpG island CpG island 17850
Tssr58230 6 113604749 to 113604768 19 + TSS region transcription start site region 58230
Brk1 6 113604772 to 113616951 12179 + protein coding gene BRICK1, SCAR/WAVE actin-nucleating complex subunit
Gm44200 6 113607475 to 113611527 4052 + sense intronic lncRNA gene predicted gene, 44200
Gm44199 6 113610318 to 113612445 2127 - antisense lncRNA gene predicted gene, 44199
Tssr58231 6 113616063 to 113616109 46 + TSS region transcription start site region 58231
Tssr58232 6 113616214 to 113616226 12 + TSS region transcription start site region 58232
Tssr62461 6 113623528 to 113623532 4 - TSS region transcription start site region 62461
Cpgi17851 6 113623671 to 113624865 1194 CpG island CpG island 17851
Tssr58233 6 113623988 to 113624037 49 + TSS region transcription start site region 58233
Vhl 6 113624021 to 113631633 7612 + protein coding gene von Hippel-Lindau tumor suppressor
Tssr58234 6 113624048 to 113624062 14 + TSS region transcription start site region 58234
Tssr58235 6 113624126 to 113624164 38 + TSS region transcription start site region 58235
Tssr58236 6 113624667 to 113624678 11 + TSS region transcription start site region 58236
1700015O11Rik 6 113631649 to 113633144 1495 - lincRNA gene RIKEN cDNA 1700015O11 gene
Tssr62462 6 113633127 to 113633145 18 - TSS region transcription start site region 62462
Cpgi17852 6 113638287 to 113638770 483 CpG island CpG island 17852
Irak2 6 113638467 to 113695026 56559 + protein coding gene interleukin-1 receptor-associated kinase 2
Tssr58237 6 113638483 to 113638544 61 + TSS region transcription start site region 58237
Tssr62463 6 113639363 to 113639377 14 - TSS region transcription start site region 62463
Gm43964 6 113640562 to 113641521 959 - antisense lncRNA gene predicted gene, 43964
Tssr58238 6 113650601 to 113650603 2 + TSS region transcription start site region 58238
Tssr62464 6 113654205 to 113654215 10 - TSS region transcription start site region 62464
Tssr58239 6 113654370 to 113654394 24 + TSS region transcription start site region 58239
Tssr62465 6 113654918 to 113654924 6 - TSS region transcription start site region 62465
Tssr62466 6 113660533 to 113660542 9 - TSS region transcription start site region 62466
Tssr58240 6 113660638 to 113660651 13 + TSS region transcription start site region 58240
Tssr58241 6 113660669 to 113660690 21 + TSS region transcription start site region 58241
Tssr1960 6 113660695 to 113660706 11 + TSS region transcription start site region 1960
Tssr58242 6 113660709 to 113660718 9 + TSS region transcription start site region 58242
Tssr58243 6 113668058 to 113668097 39 + TSS region transcription start site region 58243
Tssr1961 6 113670091 to 113670096 5 + TSS region transcription start site region 1961
Tssr1962 6 113670161 to 113670200 39 + TSS region transcription start site region 1962
Tssr58244 6 113673019 to 113673051 32 + TSS region transcription start site region 58244
Gm43963 6 113676732 to 113679219 2487 - unclassified gene predicted gene, 43963
Tssr58245 6 113681911 to 113681925 14 + TSS region transcription start site region 58245
Tssr58246 6 113682041 to 113682057 16 + TSS region transcription start site region 58246
Tssr58247 6 113684096 to 113684116 20 + TSS region transcription start site region 58247
Gm43912 6 113689855 to 113690392 537 + unclassified gene predicted gene, 43912
Tssr62467 6 113690493 to 113690501 8 - TSS region transcription start site region 62467
Tssr58248 6 113690722 to 113690743 21 + TSS region transcription start site region 58248
Tssr58249 6 113690754 to 113690769 15 + TSS region transcription start site region 58249
Tssr58250 6 113690956 to 113690976 20 + TSS region transcription start site region 58250
Tssr58251 6 113690986 to 113690997 11 + TSS region transcription start site region 58251
Tssr58252 6 113695965 to 113695982 17 + TSS region transcription start site region 58252
Cpgi17853 6 113696607 to 113698172 1565 CpG island CpG island 17853
Tssr62468 6 113696700 to 113696706 6 - TSS region transcription start site region 62468
Tatdn2 6 113697050 to 113711069 14019 + protein coding gene TatD DNase domain containing 2
Tssr58253 6 113697074 to 113697159 85 + TSS region transcription start site region 58253
Tssr58254 6 113697168 to 113697185 17 + TSS region transcription start site region 58254
Tssr58255 6 113697190 to 113697232 42 + TSS region transcription start site region 58255
Tssr58256 6 113697247 to 113697258 11 + TSS region transcription start site region 58256
Tssr58257 6 113697316 to 113697343 27 + TSS region transcription start site region 58257
Tssr58258 6 113697376 to 113697392 16 + TSS region transcription start site region 58258
Tssr58259 6 113697401 to 113697412 11 + TSS region transcription start site region 58259
Tssr58260 6 113702291 to 113702303 12 + TSS region transcription start site region 58260
Mir7042 6 113707208 to 113707265 57 + miRNA gene microRNA 7042
Gm26982 6 113714971 to 113716121 1150 + antisense lncRNA gene predicted gene, 26982
Ghrl 6 113716119 to 113719880 3761 - protein coding gene ghrelin
Tssr62469 6 113717673 to 113717713 40 - TSS region transcription start site region 62469
D6Oda23 6 113717974 to 113718116 142 DNA segment DNA segment, Chr 6, Sen-ichi Oda 23
Gm44033 6 113718584 to 113719278 694 + unclassified gene predicted gene, 44033
Tssr62470 6 113719450 to 113719468 18 - TSS region transcription start site region 62470
Tssr62471 6 113719880 to 113719883 3 - TSS region transcription start site region 62471
Gm44053 6 113725223 to 113726151 928 + lincRNA gene predicted gene, 44053
Sec13 6 113728052 to 113740681 12629 - protein coding gene SEC13 homolog, nuclear pore and COPII coat complex component
Cpgi17854 6 113740263 to 113740903 640 CpG island CpG island 17854
Tssr62472 6 113740675 to 113740708 33 - TSS region transcription start site region 62472
Tssr1963 6 113740728 to 113740734 6 - TSS region transcription start site region 1963
Atp2b2 6 113743842 to 114042613 298771 - protein coding gene ATPase, Ca++ transporting, plasma membrane 2
Tssr62473 6 113747121 to 113747125 4 - TSS region transcription start site region 62473
Cpgi17855 6 113748349 to 113748941 592 CpG island CpG island 17855
Gm44167 6 113797807 to 113799684 1877 - sense intronic lncRNA gene predicted gene, 44167
Tssr62474 6 113843481 to 113843493 12 - TSS region transcription start site region 62474
Cpgi17856 6 113856995 to 113857158 163 CpG island CpG island 17856
Cpgi17857 6 113890657 to 113892188 1531 CpG island CpG island 17857
Tssr62475 6 113891294 to 113891375 81 - TSS region transcription start site region 62475
D6Oda37 6 113896888 to 113897047 159 DNA segment DNA segment, Chr 6, Sen-ichi Oda 37
Tssr62476 6 113910446 to 113910451 5 - TSS region transcription start site region 62476
Tssr62477 6 113910471 to 113910484 13 - TSS region transcription start site region 62477
Tssr62478 6 113910485 to 113910497 12 - TSS region transcription start site region 62478
Tssr62479 6 113910543 to 113910552 9 - TSS region transcription start site region 62479
Tssr62480 6 113910578 to 113910585 7 - TSS region transcription start site region 62480
D6Oda33 6 113920848 to 113920993 145 DNA segment DNA segment, Chr 6, Sen-ichi Oda 33
Tssr62481 6 113934679 to 113934695 16 - TSS region transcription start site region 62481
Gm15082 6 113937739 to 113940206 2467 + antisense lncRNA gene predicted gene 15082
Tssr62482 6 113980005 to 113980006 1 - TSS region transcription start site region 62482
Tssr1964 6 114004754 to 114004766 12 + TSS region transcription start site region 1964
Gm15083 6 114004789 to 114052265 47476 + antisense lncRNA gene predicted gene 15083
D6Oda24 6 114024174 to 114024319 145 DNA segment DNA segment, Chr 6, Sen-ichi Oda 24
Cpgi17858 6 114041268 to 114042685 1417 CpG island CpG island 17858
Tssr62483 6 114041953 to 114042003 50 - TSS region transcription start site region 62483
Tssr62484 6 114042020 to 114042097 77 - TSS region transcription start site region 62484
Gm43911 6 114053943 to 114054018 75 + pseudogene predicted gene, 43911
Gm43932 6 114062196 to 114062247 51 + pseudogene predicted gene, 43932
D6Mit30 6 114070456 to 114070638 182 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 30
Gm36023 6 114094350 to 114098987 4637 + lncRNA gene predicted gene, 36023
Cpgi17859 6 114094451 to 114094612 161 CpG island CpG island 17859
Cpgi17860 6 114130707 to 114131850 1143 CpG island CpG island 17860
Tssr58261 6 114131229 to 114131246 17 + TSS region transcription start site region 58261
Slc6a11 6 114131241 to 114249886 118645 + protein coding gene solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Tssr58262 6 114131379 to 114131438 59 + TSS region transcription start site region 58262
D6Mit383 6 114135752 to 114135842 90 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-383
Tssr62485 6 114165480 to 114165488 8 - TSS region transcription start site region 62485
Gm8132 6 114168884 to 114169523 639 - pseudogene predicted gene 8132
Cia43 6 114182280 to 119760571 5578291 QTL collagen induced arthritis QTL 43
D6Mit329 6 114182280 to 114182454 174 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 329
Tssr58263 6 114248045 to 114248058 13 + TSS region transcription start site region 58263
Tssr58264 6 114248091 to 114248118 27 + TSS region transcription start site region 58264
Tssr58265 6 114248161 to 114248174 13 + TSS region transcription start site region 58265
Tssr58266 6 114248345 to 114248361 16 + TSS region transcription start site region 58266
Tssr58267 6 114248376 to 114248402 26 + TSS region transcription start site region 58267
Tssr1965 6 114249679 to 114249691 12 + TSS region transcription start site region 1965
Gm46972 6 114272429 to 114277114 4685 + lncRNA gene predicted gene, 46972
D6Mit55 6 114282098 to 114282207 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 55
Cpgi17861 6 114282482 to 114283256 774 CpG island CpG island 17861
Slc6a1 6 114282635 to 114317525 34890 + protein coding gene solute carrier family 6 (neurotransmitter transporter, GABA), member 1
Tssr58268 6 114282757 to 114282817 60 + TSS region transcription start site region 58268