Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:113343297-113633343

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Camk1 6 113334124 to 113343922 9798 - protein coding gene calcium/calmodulin-dependent protein kinase I
Cpgi17840 6 113343721 to 113344078 357 CpG island CpG island 17840
Tssr62437 6 113343898 to 113343966 68 - TSS region transcription start site region 62437
Tssr62438 6 113343975 to 113343989 14 - TSS region transcription start site region 62438
Lmr4b 6 113347325 to 113347522 197 QTL leishmaniasis resistance 4b
D6Mit10 6 113347325 to 113347522 197 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 10
Cia3 6 113347325 to 113347522 197 QTL collagen induced arthritis QTL 3
Gm20589 6 113352638 to 113354042 1404 - pseudogene predicted gene, 20589
Tada3 6 113366640 to 113377940 11300 - protein coding gene transcriptional adaptor 3
Tssr62439 6 113377376 to 113377396 20 - TSS region transcription start site region 62439
Tssr62440 6 113377510 to 113377548 38 - TSS region transcription start site region 62440
Tssr62441 6 113377555 to 113377577 22 - TSS region transcription start site region 62441
Cpgi17841 6 113377582 to 113378824 1242 CpG island CpG island 17841
Tssr62442 6 113377712 to 113377776 64 - TSS region transcription start site region 62442
Tssr62443 6 113377787 to 113377855 68 - TSS region transcription start site region 62443
Tssr62444 6 113377866 to 113377877 11 - TSS region transcription start site region 62444
Arpc4 6 113378115 to 113390448 12333 + protein coding gene actin related protein 2/3 complex, subunit 4
Tssr58199 6 113378158 to 113378191 33 + TSS region transcription start site region 58199
Tssr58200 6 113380713 to 113380747 34 + TSS region transcription start site region 58200
Tssr58201 6 113388957 to 113388986 29 + TSS region transcription start site region 58201
Tssr58202 6 113389035 to 113389059 24 + TSS region transcription start site region 58202
Tssr58203 6 113389109 to 113389113 4 + TSS region transcription start site region 58203
Tssr58204 6 113389192 to 113389220 28 + TSS region transcription start site region 58204
Tssr58205 6 113389246 to 113389259 13 + TSS region transcription start site region 58205
Ttll3 6 113389260 to 113414583 25323 + protein coding gene tubulin tyrosine ligase-like family, member 3
Tssr58206 6 113389272 to 113389281 9 + TSS region transcription start site region 58206
Tssr58207 6 113390715 to 113390716 1 + TSS region transcription start site region 58207
Cpgi17842 6 113392167 to 113393122 955 CpG island CpG island 17842
Tssr58208 6 113392417 to 113392484 67 + TSS region transcription start site region 58208
Tssr58209 6 113392510 to 113392517 7 + TSS region transcription start site region 58209
Tssr58210 6 113393062 to 113393082 20 + TSS region transcription start site region 58210
Rpusd3 6 113415319 to 113419340 4021 - protein coding gene RNA pseudouridylate synthase domain containing 3
Gm44280 6 113416472 to 113419582 3110 + unclassified gene predicted gene, 44280
Cpgi17843 6 113418939 to 113419496 557 CpG island CpG island 17843
Tssr62445 6 113419317 to 113419352 35 - TSS region transcription start site region 62445
Gm24387 6 113422150 to 113422239 89 + miRNA gene predicted gene, 24387
Cidec 6 113424634 to 113435760 11126 - protein coding gene cell death-inducing DFFA-like effector c
Tssr62446 6 113431985 to 113431991 6 - TSS region transcription start site region 62446
Tssr62447 6 113434499 to 113434514 15 - TSS region transcription start site region 62447
Tssr62448 6 113434529 to 113434546 17 - TSS region transcription start site region 62448
Tssr62449 6 113434757 to 113434770 13 - TSS region transcription start site region 62449
Tssr62450 6 113434777 to 113434788 11 - TSS region transcription start site region 62450
Tssr62451 6 113434800 to 113434807 7 - TSS region transcription start site region 62451
Tssr58211 6 113434892 to 113434906 14 + TSS region transcription start site region 58211
Tssr62452 6 113435748 to 113435764 16 - TSS region transcription start site region 62452
Gm43928 6 113440486 to 113440894 408 - pseudogene predicted gene, 43928
Cpgi17844 6 113442382 to 113443108 726 CpG island CpG island 17844
Jagn1 6 113442569 to 113448229 5660 + protein coding gene jagunal homolog 1
Tssr58212 6 113442571 to 113442627 56 + TSS region transcription start site region 58212
Tssr58213 6 113442628 to 113442635 7 + TSS region transcription start site region 58213
Il17re 6 113458484 to 113470758 12274 + protein coding gene interleukin 17 receptor E
Tssr58214 6 113458765 to 113458836 71 + TSS region transcription start site region 58214
Cpgi17845 6 113469267 to 113470265 998 CpG island CpG island 17845
Il17rc 6 113471455 to 113483163 11708 + protein coding gene interleukin 17 receptor C
Tssr58215 6 113471464 to 113471475 11 + TSS region transcription start site region 58215
Tssr58216 6 113471481 to 113471513 32 + TSS region transcription start site region 58216
Tssr58217 6 113471515 to 113471540 25 + TSS region transcription start site region 58217
Tssr58218 6 113472259 to 113472269 10 + TSS region transcription start site region 58218
Tssr58219 6 113472276 to 113472291 15 + TSS region transcription start site region 58219
Cpgi17846 6 113482377 to 113483473 1096 CpG island CpG island 17846
Tssr62453 6 113483156 to 113483168 12 - TSS region transcription start site region 62453
Tssr62454 6 113483170 to 113483185 15 - TSS region transcription start site region 62454
Creld1 6 113483297 to 113493343 10046 + protein coding gene cysteine-rich with EGF-like domains 1
Tssr58220 6 113483298 to 113483316 18 + TSS region transcription start site region 58220
Tssr58221 6 113483329 to 113483366 37 + TSS region transcription start site region 58221
Tssr58222 6 113483412 to 113483435 23 + TSS region transcription start site region 58222
Tssr58223 6 113483449 to 113483473 24 + TSS region transcription start site region 58223
Tssr58224 6 113483513 to 113483524 11 + TSS region transcription start site region 58224
Tssr58225 6 113483528 to 113483571 43 + TSS region transcription start site region 58225
Tssr58226 6 113483584 to 113483618 34 + TSS region transcription start site region 58226
Prrt3 6 113493639 to 113501931 8292 - protein coding gene proline-rich transmembrane protein 3
Cpgi17847 6 113494216 to 113495458 1242 CpG island CpG island 17847
Cpgi17848 6 113501646 to 113502113 467 CpG island CpG island 17848
Tssr62455 6 113501877 to 113501949 72 - TSS region transcription start site region 62455
Tssr62456 6 113501950 to 113501963 13 - TSS region transcription start site region 62456
Emc3 6 113514887 to 113531638 16751 - protein coding gene ER membrane protein complex subunit 3
Gm23365 6 113528550 to 113528674 124 - miRNA gene predicted gene, 23365
Cpgi17849 6 113531277 to 113531805 528 CpG island CpG island 17849
Tssr62457 6 113531501 to 113531512 11 - TSS region transcription start site region 62457
Tssr62458 6 113531575 to 113531667 92 - TSS region transcription start site region 62458
Tssr58227 6 113531675 to 113531721 46 + TSS region transcription start site region 58227
Fancd2 6 113531682 to 113597017 65335 + protein coding gene Fanconi anemia, complementation group D2
Tssr58228 6 113537810 to 113537811 1 + TSS region transcription start site region 58228
Tssr1959 6 113544099 to 113544109 10 + TSS region transcription start site region 1959
D6Mit11 6 113544509 to 113544602 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 11
Mnic2 6 113544602 to 86806805 -26737797 QTL macronutrient intake, carbohydrate 2
Gm44232 6 113564641 to 113564865 224 - pseudogene predicted gene, 44232
Gm46971 6 113575770 to 113577013 1243 + lncRNA gene predicted gene, 46971
Fancd2os 6 113596761 to 113600715 3954 - protein coding gene Fancd2 opposite strand
Tssr62459 6 113600626 to 113600643 17 - TSS region transcription start site region 62459
Tssr62460 6 113600645 to 113600653 8 - TSS region transcription start site region 62460
Tssr58229 6 113600758 to 113600764 6 + TSS region transcription start site region 58229
Cpgi17850 6 113604375 to 113605357 982 CpG island CpG island 17850
Tssr58230 6 113604749 to 113604768 19 + TSS region transcription start site region 58230
Brk1 6 113604772 to 113616951 12179 + protein coding gene BRICK1, SCAR/WAVE actin-nucleating complex subunit
Gm44200 6 113607475 to 113611527 4052 + sense intronic lncRNA gene predicted gene, 44200
Gm44199 6 113610318 to 113612445 2127 - antisense lncRNA gene predicted gene, 44199
Tssr58231 6 113616063 to 113616109 46 + TSS region transcription start site region 58231
Tssr58232 6 113616214 to 113616226 12 + TSS region transcription start site region 58232
Tssr62461 6 113623528 to 113623532 4 - TSS region transcription start site region 62461
Cpgi17851 6 113623671 to 113624865 1194 CpG island CpG island 17851
Tssr58233 6 113623988 to 113624037 49 + TSS region transcription start site region 58233
Vhl 6 113624021 to 113631633 7612 + protein coding gene von Hippel-Lindau tumor suppressor
Tssr58234 6 113624048 to 113624062 14 + TSS region transcription start site region 58234
Tssr58235 6 113624126 to 113624164 38 + TSS region transcription start site region 58235
Tssr58236 6 113624667 to 113624678 11 + TSS region transcription start site region 58236
1700015O11Rik 6 113631649 to 113633144 1495 - lincRNA gene RIKEN cDNA 1700015O11 gene
Tssr62462 6 113633127 to 113633145 18 - TSS region transcription start site region 62462