Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:112382389-113092390

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcga4c 6 110959922 to 112581887 1621965 QTL home cage activity 4c
Ssu2 6 112359324 to 112388023 28699 - protein coding gene ssu-2 homolog (C. elegans)
Tssr62400 6 112388013 to 112388037 24 - TSS region transcription start site region 62400
Gm38873 6 112393085 to 112398174 5089 + lncRNA gene predicted gene, 38873
Gm44336 6 112393350 to 112393817 467 - pseudogene predicted gene, 44336
Gm40395 6 112422733 to 112424511 1778 - lncRNA gene predicted gene, 40395
Gm35649 6 112452799 to 112463888 11089 - lncRNA gene predicted gene, 35649
Cav3 6 112459505 to 112472872 13367 + protein coding gene caveolin 3
Tssr58145 6 112459595 to 112459604 9 + TSS region transcription start site region 58145
Tssr58146 6 112459623 to 112459639 16 + TSS region transcription start site region 58146
Tssr58147 6 112459649 to 112459652 3 + TSS region transcription start site region 58147
Tssr58148 6 112459653 to 112459669 16 + TSS region transcription start site region 58148
Tssr58149 6 112459672 to 112459703 31 + TSS region transcription start site region 58149
Tssr58150 6 112459715 to 112459749 34 + TSS region transcription start site region 58150
Tssr58151 6 112459751 to 112459758 7 + TSS region transcription start site region 58151
Cpgi17821 6 112472197 to 112472438 241 CpG island CpG island 17821
Oxtr 6 112473683 to 112489943 16260 - protein coding gene oxytocin receptor
Tssr62401 6 112475754 to 112475759 5 - TSS region transcription start site region 62401
Cpgi17822 6 112488807 to 112490123 1316 CpG island CpG island 17822
Tssr62402 6 112488919 to 112488935 16 - TSS region transcription start site region 62402
Tssr62403 6 112488961 to 112488970 9 - TSS region transcription start site region 62403
Tssr58152 6 112489039 to 112489050 11 + TSS region transcription start site region 58152
Tssr58153 6 112489054 to 112489067 13 + TSS region transcription start site region 58153
Tssr58154 6 112489095 to 112489129 34 + TSS region transcription start site region 58154
Tssr58155 6 112489224 to 112489256 32 + TSS region transcription start site region 58155
Tssr62404 6 112489819 to 112489828 9 - TSS region transcription start site region 62404
Cpgi17823 6 112490599 to 112491153 554 CpG island CpG island 17823
Tssr62405 6 112490786 to 112490803 17 - TSS region transcription start site region 62405
Tssr62406 6 112490804 to 112490829 25 - TSS region transcription start site region 62406
Tssr62407 6 112490831 to 112490844 13 - TSS region transcription start site region 62407
Tssr62408 6 112491042 to 112491044 2 - TSS region transcription start site region 62408
Gm27944 6 112513447 to 112513549 102 + snRNA gene predicted gene, 27944
D6Mit107 6 112533607 to 112533755 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 107
Gm35706 6 112541763 to 112546264 4501 - lncRNA gene predicted gene, 35706
Gm15519 6 112563642 to 112565207 1565 + pseudogene predicted gene 15519
D6Mit23 6 112581750 to 112581887 137 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 23
Gm23002 6 112592967 to 112593073 106 - snRNA gene predicted gene, 23002
Gm5578 6 112605544 to 112606779 1235 + pseudogene predicted pseudogene 5578
Cpgi17824 6 112606025 to 112606330 305 CpG island CpG island 17824
Rad18 6 112619850 to 112696686 76836 - protein coding gene RAD18 E3 ubiquitin protein ligase
Tssr62409 6 112620791 to 112620800 9 - TSS region transcription start site region 62409
Tssr62410 6 112659918 to 112659928 10 - TSS region transcription start site region 62410
Tssr62411 6 112693593 to 112693604 11 - TSS region transcription start site region 62411
Tssr62412 6 112694645 to 112694649 4 - TSS region transcription start site region 62412
Cpgi17825 6 112696113 to 112696943 830 CpG island CpG island 17825
Tssr58156 6 112696335 to 112696349 14 + TSS region transcription start site region 58156
Tssr58157 6 112696352 to 112696384 32 + TSS region transcription start site region 58157
Tssr62413 6 112696378 to 112696394 16 - TSS region transcription start site region 62413
Tssr62414 6 112696634 to 112696675 41 - TSS region transcription start site region 62414
Tssr58158 6 112696713 to 112696753 40 + TSS region transcription start site region 58158
Tssr58159 6 112696772 to 112696786 14 + TSS region transcription start site region 58159
Gm35824 6 112696904 to 112698487 1583 + lncRNA gene predicted gene, 35824
Gm26799 6 112699780 to 112704164 4384 + lincRNA gene predicted gene, 26799
Srgap3 6 112717971 to 112947266 229295 - protein coding gene SLIT-ROBO Rho GTPase activating protein 3
Tssr62415 6 112721266 to 112721289 23 - TSS region transcription start site region 62415
Tssr62416 6 112721702 to 112721706 4 - TSS region transcription start site region 62416
Tssr62417 6 112721766 to 112721778 12 - TSS region transcription start site region 62417
Tssr62418 6 112722272 to 112722277 5 - TSS region transcription start site region 62418
Cpgi17826 6 112727275 to 112727487 212 CpG island CpG island 17826
Tssr62419 6 112737389 to 112737390 1 - TSS region transcription start site region 62419
2310039F13Rik 6 112758202 to 112758596 394 unclassified gene RIKEN cDNA 2310039F13 gene
Tssr62420 6 112758391 to 112758397 6 - TSS region transcription start site region 62420
D6Mit328 6 112779350 to 112779474 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 328
Tssr62421 6 112802153 to 112802154 1 - TSS region transcription start site region 62421
D6Oda19 6 112893351 to 112893593 242 DNA segment DNA segment, Chr 6, Sen-ichi Oda 19
Gm19021 6 112897223 to 112897876 653 + pseudogene predicted gene, 19021
Tssr62422 6 112900384 to 112900396 12 - TSS region transcription start site region 62422
Tssr62423 6 112930678 to 112930682 4 - TSS region transcription start site region 62423
Cpgi17827 6 112946810 to 112947344 534 CpG island CpG island 17827
Tssr62424 6 112946904 to 112946915 11 - TSS region transcription start site region 62424
Gm44081 6 112947037 to 112949330 2293 + lincRNA gene predicted gene, 44081
Tssr62425 6 112947246 to 112947277 31 - TSS region transcription start site region 62425
Tssr62426 6 112947281 to 112947301 20 - TSS region transcription start site region 62426
Tssr58160 6 112963368 to 112963386 18 + TSS region transcription start site region 58160
Tssr58161 6 112976179 to 112976183 4 + TSS region transcription start site region 58161
Gm6134 6 112976213 to 112976383 170 + pseudogene predicted pseudogene 6134
Gm43865 6 112991372 to 112991498 126 - pseudogene predicted gene, 43865
Gm8083 6 112992122 to 112992596 474 + pseudogene predicted gene 8083
Gm23244 6 113035843 to 113035934 91 - snRNA gene predicted gene, 23244
Gm43868 6 113044035 to 113046148 2113 - unclassified gene predicted gene, 43868
Cpgi17828 6 113045891 to 113046763 872 CpG island CpG island 17828
Tssr62427 6 113046163 to 113046177 14 - TSS region transcription start site region 62427
Thumpd3 6 113046249 to 113068278 22029 + protein coding gene THUMP domain containing 3
Tssr58162 6 113046304 to 113046369 65 + TSS region transcription start site region 58162
Tssr58163 6 113046372 to 113046389 17 + TSS region transcription start site region 58163
Tssr58164 6 113046477 to 113046488 11 + TSS region transcription start site region 58164
Gm22591 6 113060698 to 113060803 105 + snRNA gene predicted gene, 22591
Tssr58165 6 113065407 to 113065431 24 + TSS region transcription start site region 58165
Gt(ROSA)26Sor 6 113067428 to 113077244 9816 - antisense lncRNA gene gene trap ROSA 26, Philippe Soriano
Gm46982 6 113068985 to 113077229 8244 + protein coding gene predicted gene, 46982
Cpgi17829 6 113076061 to 113078336 2275 CpG island CpG island 17829
Tssr62428 6 113076317 to 113076327 10 - TSS region transcription start site region 62428
Tssr62429 6 113077181 to 113077203 22 - TSS region transcription start site region 62429
Tssr62430 6 113077237 to 113077250 13 - TSS region transcription start site region 62430
Tssr58166 6 113077354 to 113077382 28 + TSS region transcription start site region 58166
Setd5 6 113077365 to 113153435 76070 + protein coding gene SET domain containing 5
Tssr58167 6 113077387 to 113077402 15 + TSS region transcription start site region 58167
Tssr58168 6 113077455 to 113077466 11 + TSS region transcription start site region 58168
Tssr58169 6 113077567 to 113077623 56 + TSS region transcription start site region 58169
Tssr58170 6 113077631 to 113077642 11 + TSS region transcription start site region 58170
Tssr58171 6 113086824 to 113086828 4 + TSS region transcription start site region 58171