Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:110583252-112623362

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcga4b 6 104503360 to 110960065 6456705 QTL home cage activity 4b
Gm20387 6 110639320 to 110645388 6068 - antisense lncRNA gene predicted gene 20387
Cpgi17817 6 110645481 to 110646388 907 CpG island CpG island 17817
Tssr58129 6 110645572 to 110645588 16 + TSS region transcription start site region 58129
Grm7 6 110645581 to 111567230 921649 + protein coding gene glutamate receptor, metabotropic 7
Tssr58130 6 110645930 to 110645946 16 + TSS region transcription start site region 58130
Tssr58131 6 110648796 to 110648798 2 + TSS region transcription start site region 58131
Tssr58132 6 110649098 to 110649112 14 + TSS region transcription start site region 58132
Tssr58133 6 110663423 to 110663427 4 + TSS region transcription start site region 58133
Tssr58134 6 110714081 to 110714084 3 + TSS region transcription start site region 58134
Tssr58135 6 110736264 to 110736275 11 + TSS region transcription start site region 58135
Gm20386 6 110738350 to 110738481 131 + pseudogene predicted gene 20386
Tssr58136 6 110761044 to 110761047 3 + TSS region transcription start site region 58136
Tssr58137 6 110761134 to 110761149 15 + TSS region transcription start site region 58137
Tssr58138 6 110776552 to 110776556 4 + TSS region transcription start site region 58138
D6Mit148 6 110784293 to 110784431 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 148
Tssr58139 6 110940432 to 110940443 11 + TSS region transcription start site region 58139
Tssr58140 6 110940869 to 110940873 4 + TSS region transcription start site region 58140
Tssr58141 6 110946952 to 110946984 32 + TSS region transcription start site region 58141
Hcga4c 6 110959922 to 112581887 1621965 QTL home cage activity 4c
D6Mit104 6 110959922 to 110960065 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 104
D6Mit108 6 111324400 to 111324526 126 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 108
Tssr58142 6 111402395 to 111402398 3 + TSS region transcription start site region 58142
Tssr58143 6 111453672 to 111453674 2 + TSS region transcription start site region 58143
Gm22093 6 111603252 to 111603362 110 + rRNA gene predicted gene, 22093
D6Mit343 6 111612087 to 111612225 138 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-343
Gm24005 6 111627988 to 111628283 295 + unclassified non-coding RNA gene predicted gene, 24005
Gm26362 6 111992110 to 111992424 314 + unclassified non-coding RNA gene predicted gene, 26362
Gm25454 6 111999327 to 111999641 314 + unclassified non-coding RNA gene predicted gene, 25454
Cfbw2 6 112004651 to 112004738 87 QTL cystic fibrosis body weight 2
D6Mit287 6 112004651 to 112004738 87 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 287
Obrq1 6 112004738 to 92607306 -19397432 QTL obesity resistance QTL 1
Gm44192 6 112087639 to 112088194 555 - unclassified gene predicted gene, 44192
D6Mit389 6 112094529 to 112094670 141 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 389
Cpgi17818 6 112108798 to 112108955 157 CpG island CpG island 17818
Cpgi17819 6 112197503 to 112197785 282 CpG island CpG island 17819
1700054K19Rik 6 112210708 to 112212519 1811 + lincRNA gene RIKEN cDNA 1700054K19 gene
n-R5s165 6 112234163 to 112234262 99 - rRNA gene nuclear encoded rRNA 5S 165
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
Clas1 6 112269957 to 147052561 34782604 QTL carcinogen-induced lung adenoma susceptibility 1
D6Mit54 6 112269957 to 112270141 184 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 54
Tssr62398 6 112271300 to 112271307 7 - TSS region transcription start site region 62398
Cpgi17820 6 112273619 to 112273886 267 CpG island CpG island 17820
Lmcd1 6 112273758 to 112330423 56665 + protein coding gene LIM and cysteine-rich domains 1
Tssr58144 6 112273800 to 112273816 16 + TSS region transcription start site region 58144
5031434C07Rik 6 112285593 to 112288837 3244 - antisense lncRNA gene RIKEN cDNA 5031434C07 gene
Gm44193 6 112293231 to 112295753 2522 + unclassified gene predicted gene, 44193
Tssr1958 6 112305062 to 112305073 11 + TSS region transcription start site region 1958
Tssr62399 6 112352990 to 112352991 1 - TSS region transcription start site region 62399
Ssu2 6 112359324 to 112388023 28699 - protein coding gene ssu-2 homolog (C. elegans)
Tssr62400 6 112388013 to 112388037 24 - TSS region transcription start site region 62400
Gm38873 6 112393085 to 112398174 5089 + lncRNA gene predicted gene, 38873
Gm44336 6 112393350 to 112393817 467 - pseudogene predicted gene, 44336
Gm40395 6 112422733 to 112424511 1778 - lncRNA gene predicted gene, 40395
Gm35649 6 112452799 to 112463888 11089 - lncRNA gene predicted gene, 35649
Cav3 6 112459505 to 112472872 13367 + protein coding gene caveolin 3
Tssr58145 6 112459595 to 112459604 9 + TSS region transcription start site region 58145
Tssr58146 6 112459623 to 112459639 16 + TSS region transcription start site region 58146
Tssr58147 6 112459649 to 112459652 3 + TSS region transcription start site region 58147
Tssr58148 6 112459653 to 112459669 16 + TSS region transcription start site region 58148
Tssr58149 6 112459672 to 112459703 31 + TSS region transcription start site region 58149
Tssr58150 6 112459715 to 112459749 34 + TSS region transcription start site region 58150
Tssr58151 6 112459751 to 112459758 7 + TSS region transcription start site region 58151
Cpgi17821 6 112472197 to 112472438 241 CpG island CpG island 17821
Oxtr 6 112473683 to 112489943 16260 - protein coding gene oxytocin receptor
Tssr62401 6 112475754 to 112475759 5 - TSS region transcription start site region 62401
Cpgi17822 6 112488807 to 112490123 1316 CpG island CpG island 17822
Tssr62402 6 112488919 to 112488935 16 - TSS region transcription start site region 62402
Tssr62403 6 112488961 to 112488970 9 - TSS region transcription start site region 62403
Tssr58152 6 112489039 to 112489050 11 + TSS region transcription start site region 58152
Tssr58153 6 112489054 to 112489067 13 + TSS region transcription start site region 58153
Tssr58154 6 112489095 to 112489129 34 + TSS region transcription start site region 58154
Tssr58155 6 112489224 to 112489256 32 + TSS region transcription start site region 58155
Tssr62404 6 112489819 to 112489828 9 - TSS region transcription start site region 62404
Cpgi17823 6 112490599 to 112491153 554 CpG island CpG island 17823
Tssr62405 6 112490786 to 112490803 17 - TSS region transcription start site region 62405
Tssr62406 6 112490804 to 112490829 25 - TSS region transcription start site region 62406
Tssr62407 6 112490831 to 112490844 13 - TSS region transcription start site region 62407
Tssr62408 6 112491042 to 112491044 2 - TSS region transcription start site region 62408
Gm27944 6 112513447 to 112513549 102 + snRNA gene predicted gene, 27944
D6Mit107 6 112533607 to 112533755 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 107
Gm35706 6 112541763 to 112546264 4501 - lncRNA gene predicted gene, 35706
Gm15519 6 112563642 to 112565207 1565 + pseudogene predicted gene 15519
D6Mit23 6 112581750 to 112581887 137 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 23
Gm23002 6 112592967 to 112593073 106 - snRNA gene predicted gene, 23002
Gm5578 6 112605544 to 112606779 1235 + pseudogene predicted pseudogene 5578
Cpgi17824 6 112606025 to 112606330 305 CpG island CpG island 17824
Rad18 6 112619850 to 112696686 76836 - protein coding gene RAD18 E3 ubiquitin protein ligase
Tssr62409 6 112620791 to 112620800 9 - TSS region transcription start site region 62409