Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:99934548-100384579

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vamp9 5 99906254 to 99951092 44838 + protein coding gene vesicle-associated membrane protein 9
4930535B17Rik 5 99947313 to 99948225 912 unclassified gene RIKEN cDNA 4930535B17 gene
Hnrnpd 5 99955935 to 99978938 23003 - protein coding gene heterogeneous nuclear ribonucleoprotein D
Tssr52059 5 99963771 to 99963794 23 - TSS region transcription start site region 52059
Tssr52060 5 99964742 to 99964761 19 - TSS region transcription start site region 52060
Tssr52061 5 99964791 to 99964807 16 - TSS region transcription start site region 52061
Tssr52062 5 99967246 to 99967276 30 - TSS region transcription start site region 52062
Gm42127 5 99967904 to 99976527 8623 - lncRNA gene predicted gene, 42127
Tssr52063 5 99976557 to 99976593 36 - TSS region transcription start site region 52063
Cpgi16102 5 99977659 to 99979559 1900 CpG island CpG island 16102
Gm17092 5 99977686 to 99978858 1172 + antisense lncRNA gene predicted gene 17092
Tssr47472 5 99978503 to 99978570 67 + TSS region transcription start site region 47472
Tssr47473 5 99978571 to 99978633 62 + TSS region transcription start site region 47473
Tssr47474 5 99978669 to 99978684 15 + TSS region transcription start site region 47474
Tssr52064 5 99978848 to 99978859 11 - TSS region transcription start site region 52064
Tssr52065 5 99978902 to 99978913 11 - TSS region transcription start site region 52065
Tssr52066 5 99978914 to 99978966 52 - TSS region transcription start site region 52066
4930524J08Rik 5 99979061 to 99979663 602 + protein coding gene RIKEN cDNA 4930524J08 gene
D5Mit90 5 100023113 to 100023227 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 90
Hnrnpdl 5 100033577 to 100039664 6087 - protein coding gene heterogeneous nuclear ribonucleoprotein D-like
Tssr52067 5 100037642 to 100037663 21 - TSS region transcription start site region 52067
Tssr52068 5 100038160 to 100038164 4 - TSS region transcription start site region 52068
Cpgi16103 5 100038241 to 100040692 2451 CpG island CpG island 16103
Tssr52069 5 100038874 to 100038885 11 - TSS region transcription start site region 52069
Tssr52070 5 100038902 to 100038919 17 - TSS region transcription start site region 52070
Tssr52071 5 100039609 to 100039621 12 - TSS region transcription start site region 52071
Tssr52072 5 100039622 to 100039657 35 - TSS region transcription start site region 52072
Tssr52073 5 100039824 to 100039888 64 - TSS region transcription start site region 52073
Tssr52074 5 100039892 to 100039903 11 - TSS region transcription start site region 52074
Enoph1 5 100039985 to 100068760 28775 + protein coding gene enolase-phosphatase 1
Tssr47475 5 100039990 to 100040069 79 + TSS region transcription start site region 47475
Lfibq15 5 100048615 to 99002935 -1045680 QTL liver fibrosis QTL 15
Gm26363 5 100056909 to 100056991 82 - snoRNA gene predicted gene, 26363
Tmem150c 5 100077872 to 100159808 81936 - protein coding gene transmembrane protein 150C
Tssr47476 5 100077890 to 100077922 32 + TSS region transcription start site region 47476
Tmem150cos 5 100077962 to 100095273 17311 + antisense lncRNA gene transmembrane protein 150C, opposite strand
Cpgi16104 5 100079055 to 100079864 809 CpG island CpG island 16104
Gm36167 5 100108795 to 100115661 6866 + lncRNA gene predicted gene, 36167
D5Mit411 5 100115097 to 100115312 215 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 411
Cpgi16105 5 100120752 to 100121060 308 CpG island CpG island 16105
Tssr52075 5 100147090 to 100147099 9 - TSS region transcription start site region 52075
Cpgi16106 5 100158387 to 100159812 1425 CpG island CpG island 16106
Tssr52076 5 100159261 to 100159314 53 - TSS region transcription start site region 52076
Tssr52077 5 100159390 to 100159435 45 - TSS region transcription start site region 52077
Tssr52078 5 100159548 to 100159579 31 - TSS region transcription start site region 52078
Tssr52079 5 100165523 to 100165564 41 - TSS region transcription start site region 52079
Tssr52080 5 100165574 to 100165598 24 - TSS region transcription start site region 52080
Gm9932 5 100196611 to 100200724 4113 + lincRNA gene predicted gene 9932
Tssr47477 5 100205923 to 100205949 26 + TSS region transcription start site region 47477
Tssr47478 5 100210689 to 100210698 9 + TSS region transcription start site region 47478
2310034O05Rik 5 100210692 to 100218049 7357 + lincRNA gene RIKEN cDNA 2310034O05 gene
Gm36304 5 100212586 to 100217747 5161 - lncRNA gene predicted gene, 36304
Tssr52081 5 100217941 to 100217946 5 - TSS region transcription start site region 52081
Gm8091 5 100220418 to 100295515 75097 - pseudogene predicted gene 8091
Tssr52082 5 100237488 to 100237517 29 - TSS region transcription start site region 52082
Gm42129 5 100279725 to 100289553 9828 + lncRNA gene predicted gene, 42129
Gm42128 5 100291779 to 100292261 482 + lncRNA gene predicted gene, 42128
Gm45913 5 100302252 to 100307249 4997 + unclassified gene predicted gene, 45913
D5Mit89 5 100307520 to 100307666 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 89
Bmd2 5 100307666 to 55230992 -45076674 QTL bone mineral density 2
D5Mit172 5 100321045 to 100321189 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 172
Cpgi16107 5 100354713 to 100355201 488 CpG island CpG island 16107
Sec31a 5 100361649 to 100416234 54585 - protein coding gene Sec31 homolog A (S. cerevisiae)
Tssr52083 5 100373506 to 100373527 21 - TSS region transcription start site region 52083
Tssr52084 5 100379157 to 100379162 5 - TSS region transcription start site region 52084
Tssr52085 5 100383982 to 100383993 11 - TSS region transcription start site region 52085