Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:99558503-100398570

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A930011G23Rik 5 99297244 to 99729060 431816 - lncRNA gene RIKEN cDNA A930011G23 gene
Tssr52052 5 99609872 to 99609873 1 - TSS region transcription start site region 52052
Gm16228 5 99610625 to 99611433 808 - pseudogene predicted gene 16228
Tssr47465 5 99611788 to 99611795 7 + TSS region transcription start site region 47465
Tssr52053 5 99617913 to 99617917 4 - TSS region transcription start site region 52053
4930405H06Rik 5 99625836 to 99627062 1226 + antisense lncRNA gene RIKEN cDNA 4930405H06 gene
Tssr47466 5 99649756 to 99649769 13 + TSS region transcription start site region 47466
Gm25969 5 99655701 to 99655832 131 + snoRNA gene predicted gene, 25969
Gm38691 5 99681297 to 99690324 9027 + lncRNA gene predicted gene, 38691
Tssr47467 5 99682404 to 99682412 8 + TSS region transcription start site region 47467
Tssr47468 5 99682413 to 99682427 14 + TSS region transcription start site region 47468
Tssr47469 5 99682430 to 99682452 22 + TSS region transcription start site region 47469
4930522N08Rik 5 99682999 to 99685034 2035 + antisense lncRNA gene RIKEN cDNA 4930522N08 gene
Tssr47470 5 99687735 to 99687736 1 + TSS region transcription start site region 47470
Ahl17 5 99690609 to 99690738 129 QTL age related hearing loss, early onset 17
D5Mit155 5 99690609 to 99690738 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 155
Bglu18 5 99690609 to 99690738 129 QTL blood glucose level 18
Gm16226 5 99699185 to 99716008 16823 + antisense lncRNA gene predicted gene 16226
Tssr52054 5 99721982 to 99721986 4 - TSS region transcription start site region 52054
Cpgi16098 5 99728173 to 99729709 1536 CpG island CpG island 16098
Tssr52055 5 99728801 to 99728812 11 - TSS region transcription start site region 52055
Tssr52056 5 99728856 to 99728882 26 - TSS region transcription start site region 52056
Tssr52057 5 99729039 to 99729112 73 - TSS region transcription start site region 52057
Tssr52058 5 99729215 to 99729227 12 - TSS region transcription start site region 52058
Gm38413 5 99730854 to 99753973 23119 - lincRNA gene predicted gene, 38413
D5Mit238 5 99748277 to 99748415 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 238
Cpgi16099 5 99775473 to 99775863 390 CpG island CpG island 16099
Gm43249 5 99839533 to 99839990 457 - pseudogene predicted gene 43249
Gm42126 5 99851176 to 99853956 2780 - lncRNA gene predicted gene, 42126
Cpgi16100 5 99868386 to 99868730 344 CpG island CpG island 16100
Gm26252 5 99870248 to 99870323 75 + snoRNA gene predicted gene, 26252
Cpgi16101 5 99906048 to 99906704 656 CpG island CpG island 16101
Vamp9 5 99906254 to 99951092 44838 + protein coding gene vesicle-associated membrane protein 9
Tssr47471 5 99906254 to 99906284 30 + TSS region transcription start site region 47471
Gm22838 5 99928283 to 99928381 98 - snRNA gene predicted gene, 22838
4930535B17Rik 5 99947313 to 99948225 912 unclassified gene RIKEN cDNA 4930535B17 gene
Hnrnpd 5 99955935 to 99978938 23003 - protein coding gene heterogeneous nuclear ribonucleoprotein D
Tssr52059 5 99963771 to 99963794 23 - TSS region transcription start site region 52059
Tssr52060 5 99964742 to 99964761 19 - TSS region transcription start site region 52060
Tssr52061 5 99964791 to 99964807 16 - TSS region transcription start site region 52061
Tssr52062 5 99967246 to 99967276 30 - TSS region transcription start site region 52062
Gm42127 5 99967904 to 99976527 8623 - lncRNA gene predicted gene, 42127
Tssr52063 5 99976557 to 99976593 36 - TSS region transcription start site region 52063
Cpgi16102 5 99977659 to 99979559 1900 CpG island CpG island 16102
Gm17092 5 99977686 to 99978858 1172 + antisense lncRNA gene predicted gene 17092
Tssr47472 5 99978503 to 99978570 67 + TSS region transcription start site region 47472
Tssr47473 5 99978571 to 99978633 62 + TSS region transcription start site region 47473
Tssr47474 5 99978669 to 99978684 15 + TSS region transcription start site region 47474
Tssr52064 5 99978848 to 99978859 11 - TSS region transcription start site region 52064
Tssr52065 5 99978902 to 99978913 11 - TSS region transcription start site region 52065
Tssr52066 5 99978914 to 99978966 52 - TSS region transcription start site region 52066
4930524J08Rik 5 99979061 to 99979663 602 + protein coding gene RIKEN cDNA 4930524J08 gene
D5Mit90 5 100023113 to 100023227 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 90
Hnrnpdl 5 100033577 to 100039664 6087 - protein coding gene heterogeneous nuclear ribonucleoprotein D-like
Tssr52067 5 100037642 to 100037663 21 - TSS region transcription start site region 52067
Tssr52068 5 100038160 to 100038164 4 - TSS region transcription start site region 52068
Cpgi16103 5 100038241 to 100040692 2451 CpG island CpG island 16103
Tssr52069 5 100038874 to 100038885 11 - TSS region transcription start site region 52069
Tssr52070 5 100038902 to 100038919 17 - TSS region transcription start site region 52070
Tssr52071 5 100039609 to 100039621 12 - TSS region transcription start site region 52071
Tssr52072 5 100039622 to 100039657 35 - TSS region transcription start site region 52072
Tssr52073 5 100039824 to 100039888 64 - TSS region transcription start site region 52073
Tssr52074 5 100039892 to 100039903 11 - TSS region transcription start site region 52074
Enoph1 5 100039985 to 100068760 28775 + protein coding gene enolase-phosphatase 1
Tssr47475 5 100039990 to 100040069 79 + TSS region transcription start site region 47475
Lfibq15 5 100048615 to 99002935 -1045680 QTL liver fibrosis QTL 15
Gm26363 5 100056909 to 100056991 82 - snoRNA gene predicted gene, 26363
Tmem150c 5 100077872 to 100159808 81936 - protein coding gene transmembrane protein 150C
Tssr47476 5 100077890 to 100077922 32 + TSS region transcription start site region 47476
Tmem150cos 5 100077962 to 100095273 17311 + antisense lncRNA gene transmembrane protein 150C, opposite strand
Cpgi16104 5 100079055 to 100079864 809 CpG island CpG island 16104
Gm36167 5 100108795 to 100115661 6866 + lncRNA gene predicted gene, 36167
D5Mit411 5 100115097 to 100115312 215 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 411
Cpgi16105 5 100120752 to 100121060 308 CpG island CpG island 16105
Tssr52075 5 100147090 to 100147099 9 - TSS region transcription start site region 52075
Cpgi16106 5 100158387 to 100159812 1425 CpG island CpG island 16106
Tssr52076 5 100159261 to 100159314 53 - TSS region transcription start site region 52076
Tssr52077 5 100159390 to 100159435 45 - TSS region transcription start site region 52077
Tssr52078 5 100159548 to 100159579 31 - TSS region transcription start site region 52078
Tssr52079 5 100165523 to 100165564 41 - TSS region transcription start site region 52079
Tssr52080 5 100165574 to 100165598 24 - TSS region transcription start site region 52080
Gm9932 5 100196611 to 100200724 4113 + lincRNA gene predicted gene 9932
Tssr47477 5 100205923 to 100205949 26 + TSS region transcription start site region 47477
Tssr47478 5 100210689 to 100210698 9 + TSS region transcription start site region 47478
2310034O05Rik 5 100210692 to 100218049 7357 + lincRNA gene RIKEN cDNA 2310034O05 gene
Gm36304 5 100212586 to 100217747 5161 - lncRNA gene predicted gene, 36304
Tssr52081 5 100217941 to 100217946 5 - TSS region transcription start site region 52081
Gm8091 5 100220418 to 100295515 75097 - pseudogene predicted gene 8091
Tssr52082 5 100237488 to 100237517 29 - TSS region transcription start site region 52082
Gm42129 5 100279725 to 100289553 9828 + lncRNA gene predicted gene, 42129
Gm42128 5 100291779 to 100292261 482 + lncRNA gene predicted gene, 42128
Gm45913 5 100302252 to 100307249 4997 + unclassified gene predicted gene, 45913
D5Mit89 5 100307520 to 100307666 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 89
Bmd2 5 100307666 to 55230992 -45076674 QTL bone mineral density 2
D5Mit172 5 100321045 to 100321189 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 172
Cpgi16107 5 100354713 to 100355201 488 CpG island CpG island 16107
Sec31a 5 100361649 to 100416234 54585 - protein coding gene Sec31 homolog A (S. cerevisiae)
Tssr52083 5 100373506 to 100373527 21 - TSS region transcription start site region 52083
Tssr52084 5 100379157 to 100379162 5 - TSS region transcription start site region 52084
Tssr52085 5 100383982 to 100383993 11 - TSS region transcription start site region 52085
Hmtb5 5 126805880 to 99801563 -27004317 QTL hemostasis and thrombosis bleeding time 5