Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:99308373-99708392

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr52049 5 99327093 to 99327113 20 - TSS region transcription start site region 52049
Tssr52050 5 99327187 to 99327234 47 - TSS region transcription start site region 52050
Tssr47458 5 99336728 to 99336741 13 + TSS region transcription start site region 47458
Tssr47459 5 99336743 to 99336754 11 + TSS region transcription start site region 47459
Tssr47460 5 99336760 to 99336768 8 + TSS region transcription start site region 47460
Tssr47461 5 99336776 to 99336784 8 + TSS region transcription start site region 47461
Tssr52051 5 99363465 to 99363470 5 - TSS region transcription start site region 52051
Tssr47462 5 99365544 to 99365558 14 + TSS region transcription start site region 47462
Gm35314 5 99370273 to 99387829 17556 + lncRNA gene predicted gene, 35314
Tssr47463 5 99385613 to 99385616 3 + TSS region transcription start site region 47463
Cpgi16097 5 99416958 to 99417443 485 CpG island CpG island 16097
Gm42125 5 99480347 to 99488136 7789 - lncRNA gene predicted gene, 42125
Gm35253 5 99488246 to 99498914 10668 - lncRNA gene predicted gene, 35253
Tssr47464 5 99508373 to 99508392 19 + TSS region transcription start site region 47464
Gm35172 5 99508389 to 99511037 2648 + lincRNA gene predicted gene, 35172
Gm16227 5 99509944 to 99510682 738 - sense intronic lncRNA gene predicted gene 16227
D5Mit401 5 99514143 to 99514366 223 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 401
Tssr52052 5 99609872 to 99609873 1 - TSS region transcription start site region 52052
Gm16228 5 99610625 to 99611433 808 - pseudogene predicted gene 16228
Tssr47465 5 99611788 to 99611795 7 + TSS region transcription start site region 47465
Tssr52053 5 99617913 to 99617917 4 - TSS region transcription start site region 52053
4930405H06Rik 5 99625836 to 99627062 1226 + antisense lncRNA gene RIKEN cDNA 4930405H06 gene
Tssr47466 5 99649756 to 99649769 13 + TSS region transcription start site region 47466
Gm25969 5 99655701 to 99655832 131 + snoRNA gene predicted gene, 25969
Gm38691 5 99681297 to 99690324 9027 + lncRNA gene predicted gene, 38691
Tssr47467 5 99682404 to 99682412 8 + TSS region transcription start site region 47467
Tssr47468 5 99682413 to 99682427 14 + TSS region transcription start site region 47468
Tssr47469 5 99682430 to 99682452 22 + TSS region transcription start site region 47469
4930522N08Rik 5 99682999 to 99685034 2035 + antisense lncRNA gene RIKEN cDNA 4930522N08 gene
Tssr47470 5 99687735 to 99687736 1 + TSS region transcription start site region 47470
D5Mit155 5 99690609 to 99690738 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 155
Bglu18 5 99690609 to 99690738 129 QTL blood glucose level 18
Ahl17 5 99690609 to 99690738 129 QTL age related hearing loss, early onset 17
Gm16226 5 99699185 to 99716008 16823 + antisense lncRNA gene predicted gene 16226