Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:98157013-99037117

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l5H1 5 75574987 to 98277030 22702043 heritable phenotypic marker lethal, Chr 5, Harwell 1
Cpgi16084 5 98167078 to 98167917 839 CpG island CpG island 16084
Prdm8 5 98167203 to 98187454 20251 + protein coding gene PR domain containing 8
Tssr1555 5 98167365 to 98167408 43 + TSS region transcription start site region 1555
Cpgi16085 5 98168611 to 98169067 456 CpG island CpG island 16085
Tssr47439 5 98180866 to 98180881 15 + TSS region transcription start site region 47439
Cpgi16086 5 98181298 to 98181619 321 CpG island CpG island 16086
A730035I17Rik 5 98183118 to 98185024 1906 - antisense lncRNA gene RIKEN cDNA A730035I17 gene
Cpgi16087 5 98184924 to 98186958 2034 CpG island CpG island 16087
Tssr52005 5 98185923 to 98185963 40 - TSS region transcription start site region 52005
Tssr52006 5 98185970 to 98185997 27 - TSS region transcription start site region 52006
Tssr52007 5 98186014 to 98186021 7 - TSS region transcription start site region 52007
Tssr52008 5 98186064 to 98186081 17 - TSS region transcription start site region 52008
Tssr47440 5 98186173 to 98186182 9 + TSS region transcription start site region 47440
Tssr47441 5 98186600 to 98186624 24 + TSS region transcription start site region 47441
Tssr47442 5 98186712 to 98186727 15 + TSS region transcription start site region 47442
Cpgi16088 5 98253708 to 98254938 1230 CpG island CpG island 16088
Tssr47443 5 98254146 to 98254158 12 + TSS region transcription start site region 47443
Tssr47444 5 98254174 to 98254190 16 + TSS region transcription start site region 47444
Fgf5 5 98254184 to 98277030 22846 + protein coding gene fibroblast growth factor 5
Tssr47445 5 98254241 to 98254255 14 + TSS region transcription start site region 47445
Tssr47446 5 98254322 to 98254334 12 + TSS region transcription start site region 47446
Cpgi16089 5 98329159 to 98329734 575 CpG island CpG island 16089
Tssr47447 5 98329298 to 98329350 52 + TSS region transcription start site region 47447
Cfap299 5 98329304 to 98802047 472743 + protein coding gene cilia and flagella associated protein 299
Cpgi16090 5 98330423 to 98330657 234 CpG island CpG island 16090
E030032P16Rik 5 98346394 to 98349324 2930 + unclassified gene RIKEN cDNA E030032P16 gene
Gm43767 5 98453747 to 98454127 380 + pseudogene predicted gene 43767
Mir703 5 98475556 to 98475664 108 - miRNA gene microRNA 703
Gm34475 5 98479889 to 98513255 33366 - lncRNA gene predicted gene, 34475
Tssr47448 5 98484045 to 98484048 3 + TSS region transcription start site region 47448
Tssr52009 5 98484237 to 98484268 31 - TSS region transcription start site region 52009
Tssr52010 5 98513191 to 98513233 42 - TSS region transcription start site region 52010
Gm24279 5 98541484 to 98541614 130 + snoRNA gene predicted gene, 24279
Gm11111 5 98552695 to 98553744 1049 + protein coding gene predicted gene 11111
1700010H22Rik 5 98553629 to 98567004 13375 - lincRNA gene RIKEN cDNA 1700010H22 gene
Gm42122 5 98567079 to 98573166 6087 + lncRNA gene predicted gene, 42122
D5Dcr52 5 98597013 to 98597117 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 52
D5Mit399 5 98699870 to 98699992 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 399
Gm34563 5 98832753 to 98854507 21754 - lncRNA gene predicted gene, 34563
Cpgi16091 5 98836383 to 98836653 270 CpG island CpG island 16091
Cpgi16092 5 98854387 to 98855697 1310 CpG island CpG island 16092
Tssr47449 5 98854408 to 98854429 21 + TSS region transcription start site region 47449
Bmp3 5 98854415 to 98884053 29638 + protein coding gene bone morphogenetic protein 3
Tssr47450 5 98854434 to 98854466 32 + TSS region transcription start site region 47450
Tssr47451 5 98854473 to 98854487 14 + TSS region transcription start site region 47451
Tssr47452 5 98854553 to 98854562 9 + TSS region transcription start site region 47452
Tssr47453 5 98854781 to 98854809 28 + TSS region transcription start site region 47453
Tssr47454 5 98854831 to 98854842 11 + TSS region transcription start site region 47454
Tssr52011 5 98855088 to 98855092 4 - TSS region transcription start site region 52011
Gm42123 5 98874392 to 98891020 16628 - lncRNA gene predicted gene, 42123
Tssr47455 5 98880001 to 98880006 5 + TSS region transcription start site region 47455
D630004D15Rik 5 98881662 to 98884395 2733 unclassified non-coding RNA gene RIKEN cDNA D630004D15 gene
Prkg2 5 98929773 to 99037351 107578 - protein coding gene protein kinase, cGMP-dependent, type II
Gm10422 5 98930299 to 98931711 1412 unclassified gene predicted gene 10422
Tssr52012 5 98931709 to 98931713 4 - TSS region transcription start site region 52012
Tssr52013 5 98936655 to 98936658 3 - TSS region transcription start site region 52013
Tssr52014 5 98943763 to 98943773 10 - TSS region transcription start site region 52014
Tssr52015 5 98943786 to 98943805 19 - TSS region transcription start site region 52015
Tssr52016 5 98943822 to 98943840 18 - TSS region transcription start site region 52016
Tssr52017 5 98943877 to 98943891 14 - TSS region transcription start site region 52017
Tssr1556 5 98954097 to 98954098 1 - TSS region transcription start site region 1556
Tssr52018 5 98966790 to 98966799 9 - TSS region transcription start site region 52018
Tssr52019 5 99021595 to 99021598 3 - TSS region transcription start site region 52019
Gm3470 5 99021803 to 99022222 419 - pseudogene predicted gene 3470
Tssr52020 5 99022025 to 99022063 38 - TSS region transcription start site region 52020
Cpgi16093 5 99036333 to 99037784 1451 CpG island CpG island 16093
Lfibq15 5 100048615 to 99002935 -1045680 QTL liver fibrosis QTL 15