Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:97978333-100458339

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282 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l5H1 5 75574987 to 98277030 22702043 heritable phenotypic marker lethal, Chr 5, Harwell 1
Antxr2 5 97884688 to 98030962 146274 - protein coding gene anthrax toxin receptor 2
Tssr51984 5 97980678 to 97980694 16 - TSS region transcription start site region 51984
Tssr51985 5 97996037 to 97996054 17 - TSS region transcription start site region 51985
C430019N01Rik 5 97999384 to 98000950 1566 - unclassified gene RIKEN cDNA C430019N01 gene
Gm34226 5 98015842 to 98027462 11620 + lncRNA gene predicted gene, 34226
Tssr51986 5 98016902 to 98016916 14 - TSS region transcription start site region 51986
Tssr51987 5 98018222 to 98018240 18 - TSS region transcription start site region 51987
Cpgi16083 5 98030376 to 98031560 1184 CpG island CpG island 16083
Tssr51988 5 98030570 to 98030616 46 - TSS region transcription start site region 51988
Tssr51989 5 98030617 to 98030627 10 - TSS region transcription start site region 51989
Tssr51990 5 98030630 to 98030647 17 - TSS region transcription start site region 51990
Tssr47433 5 98030695 to 98030724 29 + TSS region transcription start site region 47433
Tssr47434 5 98030725 to 98030736 11 + TSS region transcription start site region 47434
Tssr51991 5 98030727 to 98030765 38 - TSS region transcription start site region 51991
Tssr51992 5 98030797 to 98030820 23 - TSS region transcription start site region 51992
Tssr1554 5 98030952 to 98030962 10 - TSS region transcription start site region 1554
Tssr51993 5 98030970 to 98030992 22 - TSS region transcription start site region 51993
Tssr51994 5 98030994 to 98031038 44 - TSS region transcription start site region 51994
Tssr47435 5 98031095 to 98031110 15 + TSS region transcription start site region 47435
Tssr51995 5 98031137 to 98031254 117 - TSS region transcription start site region 51995
Tssr47436 5 98031264 to 98031289 25 + TSS region transcription start site region 47436
Tssr51996 5 98031297 to 98031316 19 - TSS region transcription start site region 51996
Tssr47437 5 98031299 to 98031310 11 + TSS region transcription start site region 47437
Tssr51997 5 98031335 to 98031347 12 - TSS region transcription start site region 51997
Tssr51998 5 98031375 to 98031388 13 - TSS region transcription start site region 51998
Tssr51999 5 98031410 to 98031421 11 - TSS region transcription start site region 51999
Tssr52000 5 98031431 to 98031449 18 - TSS region transcription start site region 52000
Tssr52001 5 98031451 to 98031463 12 - TSS region transcription start site region 52001
Tssr52002 5 98031471 to 98031487 16 - TSS region transcription start site region 52002
Tssr52003 5 98031513 to 98031523 10 - TSS region transcription start site region 52003
Gm42759 5 98031567 to 98034005 2438 + unclassified gene predicted gene 42759
Tssr47438 5 98033300 to 98033311 11 + TSS region transcription start site region 47438
Tssr52004 5 98035070 to 98035090 20 - TSS region transcription start site region 52004
n-TKctt8 5 98041090 to 98041162 72 - tRNA gene nuclear encoded tRNA lysine 8 (anticodon CTT)
Gm42760 5 98056793 to 98057103 310 + pseudogene predicted gene 42760
Gm8041 5 98075303 to 98075918 615 - pseudogene predicted gene 8041
Gm8044 5 98078679 to 98080052 1373 - pseudogene predicted gene 8044
Gm42121 5 98136522 to 98138996 2474 - lncRNA gene predicted gene, 42121
Gm8048 5 98153181 to 98154176 995 + pseudogene predicted gene 8048
Cpgi16084 5 98167078 to 98167917 839 CpG island CpG island 16084
Prdm8 5 98167203 to 98187454 20251 + protein coding gene PR domain containing 8
Tssr1555 5 98167365 to 98167408 43 + TSS region transcription start site region 1555
Cpgi16085 5 98168611 to 98169067 456 CpG island CpG island 16085
Tssr47439 5 98180866 to 98180881 15 + TSS region transcription start site region 47439
Cpgi16086 5 98181298 to 98181619 321 CpG island CpG island 16086
A730035I17Rik 5 98183118 to 98185024 1906 - antisense lncRNA gene RIKEN cDNA A730035I17 gene
Cpgi16087 5 98184924 to 98186958 2034 CpG island CpG island 16087
Tssr52005 5 98185923 to 98185963 40 - TSS region transcription start site region 52005
Tssr52006 5 98185970 to 98185997 27 - TSS region transcription start site region 52006
Tssr52007 5 98186014 to 98186021 7 - TSS region transcription start site region 52007
Tssr52008 5 98186064 to 98186081 17 - TSS region transcription start site region 52008
Tssr47440 5 98186173 to 98186182 9 + TSS region transcription start site region 47440
Tssr47441 5 98186600 to 98186624 24 + TSS region transcription start site region 47441
Tssr47442 5 98186712 to 98186727 15 + TSS region transcription start site region 47442
Cpgi16088 5 98253708 to 98254938 1230 CpG island CpG island 16088
Tssr47443 5 98254146 to 98254158 12 + TSS region transcription start site region 47443
Tssr47444 5 98254174 to 98254190 16 + TSS region transcription start site region 47444
Fgf5 5 98254184 to 98277030 22846 + protein coding gene fibroblast growth factor 5
Tssr47445 5 98254241 to 98254255 14 + TSS region transcription start site region 47445
Tssr47446 5 98254322 to 98254334 12 + TSS region transcription start site region 47446
Cpgi16089 5 98329159 to 98329734 575 CpG island CpG island 16089
Tssr47447 5 98329298 to 98329350 52 + TSS region transcription start site region 47447
Cfap299 5 98329304 to 98802047 472743 + protein coding gene cilia and flagella associated protein 299
Cpgi16090 5 98330423 to 98330657 234 CpG island CpG island 16090
E030032P16Rik 5 98346394 to 98349324 2930 + unclassified gene RIKEN cDNA E030032P16 gene
Gm43767 5 98453747 to 98454127 380 + pseudogene predicted gene 43767
Mir703 5 98475556 to 98475664 108 - miRNA gene microRNA 703
Gm34475 5 98479889 to 98513255 33366 - lncRNA gene predicted gene, 34475
Tssr47448 5 98484045 to 98484048 3 + TSS region transcription start site region 47448
Tssr52009 5 98484237 to 98484268 31 - TSS region transcription start site region 52009
Tssr52010 5 98513191 to 98513233 42 - TSS region transcription start site region 52010
Gm24279 5 98541484 to 98541614 130 + snoRNA gene predicted gene, 24279
Gm11111 5 98552695 to 98553744 1049 + protein coding gene predicted gene 11111
1700010H22Rik 5 98553629 to 98567004 13375 - lincRNA gene RIKEN cDNA 1700010H22 gene
Gm42122 5 98567079 to 98573166 6087 + lncRNA gene predicted gene, 42122
D5Dcr52 5 98597013 to 98597117 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 52
D5Mit399 5 98699870 to 98699992 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 399
Gm34563 5 98832753 to 98854507 21754 - lncRNA gene predicted gene, 34563
Cpgi16091 5 98836383 to 98836653 270 CpG island CpG island 16091
Cpgi16092 5 98854387 to 98855697 1310 CpG island CpG island 16092
Tssr47449 5 98854408 to 98854429 21 + TSS region transcription start site region 47449
Bmp3 5 98854415 to 98884053 29638 + protein coding gene bone morphogenetic protein 3
Tssr47450 5 98854434 to 98854466 32 + TSS region transcription start site region 47450
Tssr47451 5 98854473 to 98854487 14 + TSS region transcription start site region 47451
Tssr47452 5 98854553 to 98854562 9 + TSS region transcription start site region 47452
Tssr47453 5 98854781 to 98854809 28 + TSS region transcription start site region 47453
Tssr47454 5 98854831 to 98854842 11 + TSS region transcription start site region 47454
Tssr52011 5 98855088 to 98855092 4 - TSS region transcription start site region 52011
Gm42123 5 98874392 to 98891020 16628 - lncRNA gene predicted gene, 42123
Tssr47455 5 98880001 to 98880006 5 + TSS region transcription start site region 47455
D630004D15Rik 5 98881662 to 98884395 2733 unclassified non-coding RNA gene RIKEN cDNA D630004D15 gene
Prkg2 5 98929773 to 99037351 107578 - protein coding gene protein kinase, cGMP-dependent, type II
Gm10422 5 98930299 to 98931711 1412 unclassified gene predicted gene 10422
Tssr52012 5 98931709 to 98931713 4 - TSS region transcription start site region 52012
Tssr52013 5 98936655 to 98936658 3 - TSS region transcription start site region 52013
Tssr52014 5 98943763 to 98943773 10 - TSS region transcription start site region 52014
Tssr52015 5 98943786 to 98943805 19 - TSS region transcription start site region 52015
Tssr52016 5 98943822 to 98943840 18 - TSS region transcription start site region 52016
Tssr52017 5 98943877 to 98943891 14 - TSS region transcription start site region 52017
Tssr1556 5 98954097 to 98954098 1 - TSS region transcription start site region 1556
Tssr52018 5 98966790 to 98966799 9 - TSS region transcription start site region 52018
Tssr52019 5 99021595 to 99021598 3 - TSS region transcription start site region 52019
Gm3470 5 99021803 to 99022222 419 - pseudogene predicted gene 3470
Tssr52020 5 99022025 to 99022063 38 - TSS region transcription start site region 52020
Cpgi16093 5 99036333 to 99037784 1451 CpG island CpG island 16093
Tssr52021 5 99037148 to 99037206 58 - TSS region transcription start site region 52021
Tssr52022 5 99037342 to 99037353 11 - TSS region transcription start site region 52022
Tssr52023 5 99037369 to 99037384 15 - TSS region transcription start site region 52023
Gm42124 5 99038720 to 99042910 4190 + lncRNA gene predicted gene, 42124
Gm43251 5 99039063 to 99171421 132358 - lincRNA gene predicted gene 43251
Gm19873 5 99106858 to 99109125 2267 - pseudogene predicted gene, 19873
Tssr52024 5 99215395 to 99215421 26 - TSS region transcription start site region 52024
Tssr52025 5 99215642 to 99215662 20 - TSS region transcription start site region 52025
Rasgef1b 5 99217420 to 99252927 35507 - protein coding gene RasGEF domain family, member 1B
Tssr52026 5 99217759 to 99217760 1 - TSS region transcription start site region 52026
Tssr52027 5 99217798 to 99217800 2 - TSS region transcription start site region 52027
Tssr52028 5 99217832 to 99217843 11 - TSS region transcription start site region 52028
Tssr47456 5 99217833 to 99217849 16 + TSS region transcription start site region 47456
Tssr52029 5 99217997 to 99218001 4 - TSS region transcription start site region 52029
Tssr52030 5 99218333 to 99218339 6 - TSS region transcription start site region 52030
Tssr52031 5 99218430 to 99218441 11 - TSS region transcription start site region 52031
Tssr52032 5 99218539 to 99218553 14 - TSS region transcription start site region 52032
Tssr52033 5 99223547 to 99223559 12 - TSS region transcription start site region 52033
Tssr52034 5 99223583 to 99223614 31 - TSS region transcription start site region 52034
Tssr52035 5 99223632 to 99223659 27 - TSS region transcription start site region 52035
Tssr52036 5 99229447 to 99229473 26 - TSS region transcription start site region 52036
Tssr52037 5 99240395 to 99240406 11 - TSS region transcription start site region 52037
Tssr52038 5 99240817 to 99240824 7 - TSS region transcription start site region 52038
Tssr52039 5 99243214 to 99243252 38 - TSS region transcription start site region 52039
Tssr52040 5 99243282 to 99243284 2 - TSS region transcription start site region 52040
Tssr52041 5 99248553 to 99248569 16 - TSS region transcription start site region 52041
Tssr52042 5 99248594 to 99248607 13 - TSS region transcription start site region 52042
Tssr52043 5 99249679 to 99249690 11 - TSS region transcription start site region 52043
Tssr52044 5 99249813 to 99249828 15 - TSS region transcription start site region 52044
Tssr52045 5 99250235 to 99250273 38 - TSS region transcription start site region 52045
Tssr52046 5 99251509 to 99251529 20 - TSS region transcription start site region 52046
Cpgi16094 5 99251599 to 99252107 508 CpG island CpG island 16094
Cpgi16095 5 99252352 to 99253369 1017 CpG island CpG island 16095
Tssr52047 5 99252810 to 99252824 14 - TSS region transcription start site region 52047
Tssr52048 5 99252839 to 99252854 15 - TSS region transcription start site region 52048
Gm35394 5 99274095 to 99279284 5189 + lincRNA gene predicted gene, 35394
Tssr47457 5 99274651 to 99274664 13 + TSS region transcription start site region 47457
Cpgi16096 5 99280000 to 99280335 335 CpG island CpG island 16096
A930011G23Rik 5 99297244 to 99729060 431816 - lncRNA gene RIKEN cDNA A930011G23 gene
D5Mit91 5 99307426 to 99307631 205 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 91
Tssr52049 5 99327093 to 99327113 20 - TSS region transcription start site region 52049
Tssr52050 5 99327187 to 99327234 47 - TSS region transcription start site region 52050
Tssr47458 5 99336728 to 99336741 13 + TSS region transcription start site region 47458
Tssr47459 5 99336743 to 99336754 11 + TSS region transcription start site region 47459
Tssr47460 5 99336760 to 99336768 8 + TSS region transcription start site region 47460
Tssr47461 5 99336776 to 99336784 8 + TSS region transcription start site region 47461
Tssr52051 5 99363465 to 99363470 5 - TSS region transcription start site region 52051
Tssr47462 5 99365544 to 99365558 14 + TSS region transcription start site region 47462
Gm35314 5 99370273 to 99387829 17556 + lncRNA gene predicted gene, 35314
Tssr47463 5 99385613 to 99385616 3 + TSS region transcription start site region 47463
Cpgi16097 5 99416958 to 99417443 485 CpG island CpG island 16097
Gm42125 5 99480347 to 99488136 7789 - lncRNA gene predicted gene, 42125
Gm35253 5 99488246 to 99498914 10668 - lncRNA gene predicted gene, 35253
Tssr47464 5 99508373 to 99508392 19 + TSS region transcription start site region 47464
Gm35172 5 99508389 to 99511037 2648 + lincRNA gene predicted gene, 35172
Gm16227 5 99509944 to 99510682 738 - sense intronic lncRNA gene predicted gene 16227
D5Mit401 5 99514143 to 99514366 223 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 401
Tssr52052 5 99609872 to 99609873 1 - TSS region transcription start site region 52052
Gm16228 5 99610625 to 99611433 808 - pseudogene predicted gene 16228
Tssr47465 5 99611788 to 99611795 7 + TSS region transcription start site region 47465
Tssr52053 5 99617913 to 99617917 4 - TSS region transcription start site region 52053
4930405H06Rik 5 99625836 to 99627062 1226 + antisense lncRNA gene RIKEN cDNA 4930405H06 gene
Tssr47466 5 99649756 to 99649769 13 + TSS region transcription start site region 47466
Gm25969 5 99655701 to 99655832 131 + snoRNA gene predicted gene, 25969
Gm38691 5 99681297 to 99690324 9027 + lncRNA gene predicted gene, 38691
Tssr47467 5 99682404 to 99682412 8 + TSS region transcription start site region 47467
Tssr47468 5 99682413 to 99682427 14 + TSS region transcription start site region 47468
Tssr47469 5 99682430 to 99682452 22 + TSS region transcription start site region 47469
4930522N08Rik 5 99682999 to 99685034 2035 + antisense lncRNA gene RIKEN cDNA 4930522N08 gene
Tssr47470 5 99687735 to 99687736 1 + TSS region transcription start site region 47470
D5Mit155 5 99690609 to 99690738 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 155
Ahl17 5 99690609 to 99690738 129 QTL age related hearing loss, early onset 17
Bglu18 5 99690609 to 99690738 129 QTL blood glucose level 18
Gm16226 5 99699185 to 99716008 16823 + antisense lncRNA gene predicted gene 16226
Tssr52054 5 99721982 to 99721986 4 - TSS region transcription start site region 52054
Cpgi16098 5 99728173 to 99729709 1536 CpG island CpG island 16098
Tssr52055 5 99728801 to 99728812 11 - TSS region transcription start site region 52055
Tssr52056 5 99728856 to 99728882 26 - TSS region transcription start site region 52056
Tssr52057 5 99729039 to 99729112 73 - TSS region transcription start site region 52057
Tssr52058 5 99729215 to 99729227 12 - TSS region transcription start site region 52058
Gm38413 5 99730854 to 99753973 23119 - lincRNA gene predicted gene, 38413
D5Mit238 5 99748277 to 99748415 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 238
Cpgi16099 5 99775473 to 99775863 390 CpG island CpG island 16099
Gm43249 5 99839533 to 99839990 457 - pseudogene predicted gene 43249
Gm42126 5 99851176 to 99853956 2780 - lncRNA gene predicted gene, 42126
Cpgi16100 5 99868386 to 99868730 344 CpG island CpG island 16100
Gm26252 5 99870248 to 99870323 75 + snoRNA gene predicted gene, 26252
Cpgi16101 5 99906048 to 99906704 656 CpG island CpG island 16101
Vamp9 5 99906254 to 99951092 44838 + protein coding gene vesicle-associated membrane protein 9
Tssr47471 5 99906254 to 99906284 30 + TSS region transcription start site region 47471
Gm22838 5 99928283 to 99928381 98 - snRNA gene predicted gene, 22838
4930535B17Rik 5 99947313 to 99948225 912 unclassified gene RIKEN cDNA 4930535B17 gene
Hnrnpd 5 99955935 to 99978938 23003 - protein coding gene heterogeneous nuclear ribonucleoprotein D
Tssr52059 5 99963771 to 99963794 23 - TSS region transcription start site region 52059