Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:96525194-98895195

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dshv2 5 75154687 to 97871944 22717257 QTL dorsal hippocampal volume 2
l5H1 5 75574987 to 98277030 22702043 heritable phenotypic marker lethal, Chr 5, Harwell 1
Pwgrq15 5 77027976 to 97510356 20482380 QTL post-weaning growth rate QTL 15
Ogrq2 5 77027976 to 97510356 20482380 QTL overall growth rate QTL 2
Fras1 5 96373955 to 96784728 410773 + protein coding gene Fraser extracellular matrix complex subunit 1
Tssr1550 5 96573796 to 96573807 11 + TSS region transcription start site region 1550
Tssr47403 5 96657124 to 96657126 2 + TSS region transcription start site region 47403
Gm32995 5 96729060 to 96733882 4822 - lncRNA gene predicted gene, 32995
Gm42604 5 96735547 to 96739364 3817 - antisense lncRNA gene predicted gene 42604
Tssr51963 5 96739212 to 96739222 10 - TSS region transcription start site region 51963
Tssr51964 5 96739664 to 96739686 22 - TSS region transcription start site region 51964
Tssr1551 5 96747693 to 96747698 5 + TSS region transcription start site region 1551
Tssr47404 5 96793352 to 96793380 28 + TSS region transcription start site region 47404
Cpgi16077 5 96793358 to 96793691 333 CpG island CpG island 16077
Anxa3 5 96793385 to 96845968 52583 + protein coding gene annexin A3
Tssr47405 5 96793387 to 96793404 17 + TSS region transcription start site region 47405
Tssr47406 5 96793413 to 96793424 11 + TSS region transcription start site region 47406
Tssr47407 5 96793426 to 96793431 5 + TSS region transcription start site region 47407
Tssr47408 5 96793453 to 96793528 75 + TSS region transcription start site region 47408
Tssr47409 5 96796082 to 96796093 11 + TSS region transcription start site region 47409
Gm42603 5 96798207 to 96800352 2145 + unclassified gene predicted gene 42603
Tssr47410 5 96799792 to 96799809 17 + TSS region transcription start site region 47410
Tssr47411 5 96824902 to 96824916 14 + TSS region transcription start site region 47411
Tssr47412 5 96827577 to 96827583 6 + TSS region transcription start site region 47412
Tssr47413 5 96831474 to 96831489 15 + TSS region transcription start site region 47413
Tssr47414 5 96837477 to 96837526 49 + TSS region transcription start site region 47414
Tssr47415 5 96841995 to 96842026 31 + TSS region transcription start site region 47415
Tssr47416 5 96849498 to 96849510 12 + TSS region transcription start site region 47416
1700016F12Rik 5 96849505 to 96852938 3433 + lincRNA gene RIKEN cDNA 1700016F12 gene
Gm33100 5 96879310 to 96891170 11860 + lncRNA gene predicted gene, 33100
Gm42601 5 96879342 to 96891172 11830 + lincRNA gene predicted gene 42601
Gm42602 5 96879518 to 96882741 3223 + unclassified gene predicted gene 42602
Gm24623 5 96907632 to 96907825 193 + snRNA gene predicted gene, 24623
Gm33370 5 96910341 to 96922175 11834 - lincRNA gene predicted gene, 33370
Tssr47417 5 96911737 to 96911792 55 + TSS region transcription start site region 47417
Gm43147 5 96912700 to 96913241 541 - unclassified gene predicted gene 43147
D5Mit310 5 96913474 to 96913572 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 310
D5Mit310.1 5 96913555 to 96913707 152 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 310.1
Tssr47418 5 96917996 to 96918014 18 + TSS region transcription start site region 47418
Tssr47419 5 96918355 to 96918360 5 + TSS region transcription start site region 47419
Tssr51965 5 96921152 to 96921160 8 - TSS region transcription start site region 51965
Tssr51966 5 96921162 to 96921178 16 - TSS region transcription start site region 51966
Tssr51967 5 96921182 to 96921198 16 - TSS region transcription start site region 51967
Tssr51968 5 96921225 to 96921238 13 - TSS region transcription start site region 51968
Gm8013 5 96921272 to 96934867 13595 + lincRNA gene predicted gene 8013
Tssr51969 5 96922141 to 96922156 15 - TSS region transcription start site region 51969
Tssr51970 5 96922176 to 96922188 12 - TSS region transcription start site region 51970
Gm46916 5 96936612 to 96942090 5478 - lncRNA gene predicted gene, 46916
Gm43148 5 96936813 to 96937332 519 + unclassified gene predicted gene 43148
Gm43144 5 96940297 to 96940781 484 + unclassified gene predicted gene 43144
Tssr47420 5 96963165 to 96963192 27 + TSS region transcription start site region 47420
Tssr47421 5 96968821 to 96968837 16 + TSS region transcription start site region 47421
Tssr47422 5 96996020 to 96996033 13 + TSS region transcription start site region 47422
Gm9484 5 96996206 to 96997364 1158 - lincRNA gene predicted gene 9484
Cpgi16078 5 96996771 to 96998472 1701 CpG island CpG island 16078
Tssr1552 5 96997438 to 96997485 47 + TSS region transcription start site region 1552
Tssr47423 5 96997676 to 96997766 90 + TSS region transcription start site region 47423
Bmp2k 5 96997689 to 97091048 93359 + protein coding gene BMP2 inducible kinase
Tssr47424 5 97006513 to 97006522 9 + TSS region transcription start site region 47424
Gm43145 5 97046181 to 97046808 627 + unclassified gene predicted gene 43145
Tssr47425 5 97048798 to 97048806 8 + TSS region transcription start site region 47425
Tssr47426 5 97048876 to 97048888 12 + TSS region transcription start site region 47426
Paqr3 5 97082329 to 97111596 29267 - protein coding gene progestin and adipoQ receptor family member III
Cpgi16079 5 97087131 to 97087822 691 CpG island CpG island 16079
Tssr47427 5 97090822 to 97090847 25 + TSS region transcription start site region 47427
Tssr47428 5 97091249 to 97091253 4 + TSS region transcription start site region 47428
Tssr51971 5 97094111 to 97094113 2 - TSS region transcription start site region 51971
Tssr51972 5 97095806 to 97095822 16 - TSS region transcription start site region 51972
Cpgi16080 5 97111147 to 97111909 762 CpG island CpG island 16080
Tssr51973 5 97111545 to 97111554 9 - TSS region transcription start site region 51973
Tssr51974 5 97111565 to 97111586 21 - TSS region transcription start site region 51974
Tssr51975 5 97111589 to 97111632 43 - TSS region transcription start site region 51975
Gm33609 5 97143026 to 97149848 6822 + lincRNA gene predicted gene, 33609
Tssr47429 5 97195572 to 97195598 26 + TSS region transcription start site region 47429
Gm2861 5 97195586 to 97207964 12378 + lincRNA gene predicted gene 2861
Gm33911 5 97208433 to 97223767 15334 - lncRNA gene predicted gene, 33911
Tssr47430 5 97264744 to 97264750 6 + TSS region transcription start site region 47430
Gm5560 5 97264828 to 97265719 891 + pseudogene predicted pseudogene 5560
Gm33969 5 97325904 to 97348439 22535 + lincRNA gene predicted gene, 33969
Naa11 5 97382209 to 97392330 10121 - protein coding gene N(alpha)-acetyltransferase 11, NatA catalytic subunit
Cpgi16081 5 97391864 to 97392471 607 CpG island CpG island 16081
Tssr51976 5 97392314 to 97392328 14 - TSS region transcription start site region 51976
Tssr51977 5 97392332 to 97392352 20 - TSS region transcription start site region 51977
Tssr51978 5 97392355 to 97392365 10 - TSS region transcription start site region 51978
Tssr51979 5 97392371 to 97392385 14 - TSS region transcription start site region 51979
4930467D21Rik 5 97392417 to 97588126 195709 + lincRNA gene RIKEN cDNA 4930467D21 gene
Gk2 5 97455161 to 97457008 1847 - protein coding gene glycerol kinase 2
Tssr51980 5 97456971 to 97457007 36 - TSS region transcription start site region 51980
D5Ertd215e 5 97552781 to 97553006 225 DNA segment DNA segment, Chr 5, ERATO Doi 215, expressed
Gm34029 5 97636541 to 97643165 6624 + lncRNA gene predicted gene, 34029
Tssr47431 5 97700798 to 97700815 17 + TSS region transcription start site region 47431
Mono1 5 97701400 to 97701400 0 QTL monocyte differential 1
Tssr1553 5 97710194 to 97710195 1 + TSS region transcription start site region 1553
Gm34097 5 97822522 to 97846957 24435 - lncRNA gene predicted gene, 34097
Cypr3 5 97871790 to 97871944 154 QTL cytokine production 3
D5Mit20 5 97871790 to 97871944 154 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 20
Antxr2 5 97884688 to 98030962 146274 - protein coding gene anthrax toxin receptor 2
Tssr51981 5 97919878 to 97919883 5 - TSS region transcription start site region 51981
Tssr51982 5 97925674 to 97925683 9 - TSS region transcription start site region 51982
Tssr51983 5 97929814 to 97929833 19 - TSS region transcription start site region 51983
Cpgi16082 5 97935190 to 97935859 669 CpG island CpG island 16082
Gdap7 5 97954051 to 97954531 480 unclassified gene ganglioside-induced differentiation-associated-protein 7
Tssr47432 5 97962007 to 97962012 5 + TSS region transcription start site region 47432
Tssr51984 5 97980678 to 97980694 16 - TSS region transcription start site region 51984
Tssr51985 5 97996037 to 97996054 17 - TSS region transcription start site region 51985
C430019N01Rik 5 97999384 to 98000950 1566 - unclassified gene RIKEN cDNA C430019N01 gene
Gm34226 5 98015842 to 98027462 11620 + lncRNA gene predicted gene, 34226
Tssr51986 5 98016902 to 98016916 14 - TSS region transcription start site region 51986
Tssr51987 5 98018222 to 98018240 18 - TSS region transcription start site region 51987
Cpgi16083 5 98030376 to 98031560 1184 CpG island CpG island 16083
Tssr51988 5 98030570 to 98030616 46 - TSS region transcription start site region 51988
Tssr51989 5 98030617 to 98030627 10 - TSS region transcription start site region 51989
Tssr51990 5 98030630 to 98030647 17 - TSS region transcription start site region 51990
Tssr47433 5 98030695 to 98030724 29 + TSS region transcription start site region 47433
Tssr47434 5 98030725 to 98030736 11 + TSS region transcription start site region 47434
Tssr51991 5 98030727 to 98030765 38 - TSS region transcription start site region 51991
Tssr51992 5 98030797 to 98030820 23 - TSS region transcription start site region 51992
Tssr1554 5 98030952 to 98030962 10 - TSS region transcription start site region 1554
Tssr51993 5 98030970 to 98030992 22 - TSS region transcription start site region 51993
Tssr51994 5 98030994 to 98031038 44 - TSS region transcription start site region 51994
Tssr47435 5 98031095 to 98031110 15 + TSS region transcription start site region 47435
Tssr51995 5 98031137 to 98031254 117 - TSS region transcription start site region 51995
Tssr47436 5 98031264 to 98031289 25 + TSS region transcription start site region 47436
Tssr51996 5 98031297 to 98031316 19 - TSS region transcription start site region 51996
Tssr47437 5 98031299 to 98031310 11 + TSS region transcription start site region 47437
Tssr51997 5 98031335 to 98031347 12 - TSS region transcription start site region 51997
Tssr51998 5 98031375 to 98031388 13 - TSS region transcription start site region 51998
Tssr51999 5 98031410 to 98031421 11 - TSS region transcription start site region 51999
Tssr52000 5 98031431 to 98031449 18 - TSS region transcription start site region 52000
Tssr52001 5 98031451 to 98031463 12 - TSS region transcription start site region 52001
Tssr52002 5 98031471 to 98031487 16 - TSS region transcription start site region 52002
Tssr52003 5 98031513 to 98031523 10 - TSS region transcription start site region 52003
Gm42759 5 98031567 to 98034005 2438 + unclassified gene predicted gene 42759
Tssr47438 5 98033300 to 98033311 11 + TSS region transcription start site region 47438
Tssr52004 5 98035070 to 98035090 20 - TSS region transcription start site region 52004
n-TKctt8 5 98041090 to 98041162 72 - tRNA gene nuclear encoded tRNA lysine 8 (anticodon CTT)
Gm42760 5 98056793 to 98057103 310 + pseudogene predicted gene 42760
Gm8041 5 98075303 to 98075918 615 - pseudogene predicted gene 8041
Gm8044 5 98078679 to 98080052 1373 - pseudogene predicted gene 8044
Gm42121 5 98136522 to 98138996 2474 - lncRNA gene predicted gene, 42121
Gm8048 5 98153181 to 98154176 995 + pseudogene predicted gene 8048
Cpgi16084 5 98167078 to 98167917 839 CpG island CpG island 16084
Prdm8 5 98167203 to 98187454 20251 + protein coding gene PR domain containing 8
Tssr1555 5 98167365 to 98167408 43 + TSS region transcription start site region 1555
Cpgi16085 5 98168611 to 98169067 456 CpG island CpG island 16085
Tssr47439 5 98180866 to 98180881 15 + TSS region transcription start site region 47439
Cpgi16086 5 98181298 to 98181619 321 CpG island CpG island 16086
A730035I17Rik 5 98183118 to 98185024 1906 - antisense lncRNA gene RIKEN cDNA A730035I17 gene
Cpgi16087 5 98184924 to 98186958 2034 CpG island CpG island 16087
Tssr52005 5 98185923 to 98185963 40 - TSS region transcription start site region 52005
Tssr52006 5 98185970 to 98185997 27 - TSS region transcription start site region 52006
Tssr52007 5 98186014 to 98186021 7 - TSS region transcription start site region 52007
Tssr52008 5 98186064 to 98186081 17 - TSS region transcription start site region 52008
Tssr47440 5 98186173 to 98186182 9 + TSS region transcription start site region 47440
Tssr47441 5 98186600 to 98186624 24 + TSS region transcription start site region 47441
Tssr47442 5 98186712 to 98186727 15 + TSS region transcription start site region 47442
Cpgi16088 5 98253708 to 98254938 1230 CpG island CpG island 16088
Tssr47443 5 98254146 to 98254158 12 + TSS region transcription start site region 47443
Tssr47444 5 98254174 to 98254190 16 + TSS region transcription start site region 47444
Fgf5 5 98254184 to 98277030 22846 + protein coding gene fibroblast growth factor 5
Tssr47445 5 98254241 to 98254255 14 + TSS region transcription start site region 47445
Tssr47446 5 98254322 to 98254334 12 + TSS region transcription start site region 47446
Cpgi16089 5 98329159 to 98329734 575 CpG island CpG island 16089
Tssr47447 5 98329298 to 98329350 52 + TSS region transcription start site region 47447
Cfap299 5 98329304 to 98802047 472743 + protein coding gene cilia and flagella associated protein 299
Cpgi16090 5 98330423 to 98330657 234 CpG island CpG island 16090
E030032P16Rik 5 98346394 to 98349324 2930 + unclassified gene RIKEN cDNA E030032P16 gene
Gm43767 5 98453747 to 98454127 380 + pseudogene predicted gene 43767
Mir703 5 98475556 to 98475664 108 - miRNA gene microRNA 703
Gm34475 5 98479889 to 98513255 33366 - lncRNA gene predicted gene, 34475
Tssr47448 5 98484045 to 98484048 3 + TSS region transcription start site region 47448
Tssr52009 5 98484237 to 98484268 31 - TSS region transcription start site region 52009
Tssr52010 5 98513191 to 98513233 42 - TSS region transcription start site region 52010
Gm24279 5 98541484 to 98541614 130 + snoRNA gene predicted gene, 24279
Gm11111 5 98552695 to 98553744 1049 + protein coding gene predicted gene 11111
1700010H22Rik 5 98553629 to 98567004 13375 - lincRNA gene RIKEN cDNA 1700010H22 gene
Gm42122 5 98567079 to 98573166 6087 + lncRNA gene predicted gene, 42122
D5Dcr52 5 98597013 to 98597117 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 52
D5Mit399 5 98699870 to 98699992 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 399
Gm34563 5 98832753 to 98854507 21754 - lncRNA gene predicted gene, 34563
Cpgi16091 5 98836383 to 98836653 270 CpG island CpG island 16091
Cpgi16092 5 98854387 to 98855697 1310 CpG island CpG island 16092
Tssr47449 5 98854408 to 98854429 21 + TSS region transcription start site region 47449
Bmp3 5 98854415 to 98884053 29638 + protein coding gene bone morphogenetic protein 3
Tssr47450 5 98854434 to 98854466 32 + TSS region transcription start site region 47450
Tssr47451 5 98854473 to 98854487 14 + TSS region transcription start site region 47451
Tssr47452 5 98854553 to 98854562 9 + TSS region transcription start site region 47452
Tssr47453 5 98854781 to 98854809 28 + TSS region transcription start site region 47453
Tssr47454 5 98854831 to 98854842 11 + TSS region transcription start site region 47454
Tssr52011 5 98855088 to 98855092 4 - TSS region transcription start site region 52011
Gm42123 5 98874392 to 98891020 16628 - lncRNA gene predicted gene, 42123
Tssr47455 5 98880001 to 98880006 5 + TSS region transcription start site region 47455
D630004D15Rik 5 98881662 to 98884395 2733 unclassified non-coding RNA gene RIKEN cDNA D630004D15 gene
Tir10 5 113883925 to 97871790 -16012135 QTL trypanosome infection response 10
Elmaz1 5 116738565 to 97871790 -18866775 QTL elevated maze behavior 1