Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:93850024-96352282

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm7792 5 93843776 to 93856107 12331 + protein coding gene predicted gene 7792
Gm16429 5 93925013 to 93929195 4182 - protein coding gene predicted gene 16429
Gm6346 5 93936755 to 93939485 2730 + pseudogene predicted gene 6346
Gm3089 5 93996481 to 93999174 2693 + pseudogene predicted gene 3089
BC061212 5 94066454 to 94070545 4091 - protein coding gene cDNA sequence BC061212
Gm6351 5 94076385 to 94080997 4612 + protein coding gene predicted gene 6351
Gm3106 5 94218005 to 94222010 4005 + protein coding gene predicted gene 3106
A430089I19Rik 5 94302519 to 94306796 4277 - protein coding gene RIKEN cDNA A430089I19 gene
Gm6502 5 94314435 to 94317255 2820 + protein coding gene predicted gene 6502
AA792892 5 94377340 to 94384334 6994 + protein coding gene expressed sequence AA792892
BC080696 5 94434357 to 94436925 2568 - pseudogene cDNA sequence BC080696
Gm7682 5 94445784 to 94448653 2869 + protein coding gene predicted gene 7682
Gm3139 5 94526284 to 94538367 12083 + protein coding gene predicted gene 3139
Gm42117 5 94586408 to 94607374 20966 + lncRNA gene predicted gene, 42117
Gm3147 5 94612305 to 94616458 4153 - protein coding gene predicted gene 3147
Gm6509 5 94623979 to 94626848 2869 + protein coding gene predicted gene 6509
Gm6205 5 94648416 to 94685374 36958 + protein coding gene predicted gene 6205
Gm42561 5 94733356 to 94736087 2731 + pseudogene predicted gene 42561
Gm7663 5 94769619 to 94772066 2447 - pseudogene predicted gene 7663
Gm46934 5 94778216 to 94780918 2702 + protein coding gene predicted gene, 46934
Gm3183 5 94873783 to 94877205 3422 + protein coding gene predicted gene 3183
Gm42118 5 94925345 to 94946310 20965 + lncRNA gene predicted gene, 42118
Gm3176 5 94951537 to 94954134 2597 - pseudogene predicted gene 3176
Gm7647 5 94963018 to 94965694 2676 + pseudogene predicted gene 7647
Gm6367 5 94988626 to 95026536 37910 + protein coding gene predicted gene 6367
Gm46939 5 95056149 to 95059665 3516 + pseudogene predicted gene, 46939
Gm42661 5 95063576 to 95066307 2731 + pseudogene predicted gene 42661
Gm7939 5 95100024 to 95102282 2258 - pseudogene predicted gene 7939
Gm7942 5 95108456 to 95111158 2702 + protein coding gene predicted gene 7942
Gm16513 5 95182624 to 95195342 12718 + protein coding gene predicted gene, Gm16513
Gm10424 5 95268729 to 95272884 4155 - protein coding gene predicted gene 10424
Gm6468 5 95280462 to 95283192 2730 + pseudogene predicted gene 6468
Gm3259 5 95305923 to 95343575 37652 + protein coding gene predicted gene 3259
Gm32072 5 95381054 to 95383784 2730 + pseudogene predicted gene, 32072
Gm7961 5 95417110 to 95419751 2641 - pseudogene predicted gene 7961
Gm42662 5 95425935 to 95428628 2693 - pseudogene predicted gene 42662
Gm46935 5 95425935 to 95428637 2702 + protein coding gene predicted gene, 46935
D5Ertd577e 5 95456806 to 95485587 28781 + protein coding gene DNA segment, Chr 5, ERATO Doi 577, expressed
Gm3286 5 95510742 to 95522402 11660 + protein coding gene predicted gene 3286
Gm7971 5 95590835 to 95595018 4183 - protein coding gene predicted gene 7971
Gm6348 5 95602578 to 95605308 2730 + pseudogene predicted gene 6348
Gm3302 5 95662305 to 95664998 2693 + pseudogene predicted gene 3302
Gm7978 5 95732092 to 95736173 4081 - protein coding gene predicted gene 7978
Gm7982 5 95742014 to 95746617 4603 + protein coding gene predicted gene 7982
E330014E10Rik 5 95775870 to 95804230 28360 + protein coding gene RIKEN cDNA E330014E10 gene
Gm42714 5 95834961 to 95837450 2489 - pseudogene predicted gene 42714
Gm5559 5 95861714 to 95862715 1001 + pseudogene predicted gene 5559
Gm25937 5 95867334 to 95867440 106 + snRNA gene predicted gene, 25937
D5Mit423 5 95943626 to 95943749 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 423
Tssr47388 5 95956916 to 95956933 17 + TSS region transcription start site region 47388
Cxcl13 5 95956951 to 95961068 4117 + protein coding gene chemokine (C-X-C motif) ligand 13
Tssr47389 5 95958716 to 95958738 22 + TSS region transcription start site region 47389
Tssr47390 5 95960309 to 95960314 5 + TSS region transcription start site region 47390
Tssr47391 5 95973920 to 95973924 4 + TSS region transcription start site region 47391
Gm7993 5 95974240 to 95975623 1383 + pseudogene predicted gene 7993
D5Mit313 5 96035624 to 96035733 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 313
Cnot6l 5 96070333 to 96164171 93838 - protein coding gene CCR4-NOT transcription complex, subunit 6-like
Tssr51946 5 96077145 to 96077161 16 - TSS region transcription start site region 51946
Tssr51947 5 96092514 to 96092518 4 - TSS region transcription start site region 51947
Tssr51948 5 96093089 to 96093093 4 - TSS region transcription start site region 51948
Tssr51949 5 96093351 to 96093355 4 - TSS region transcription start site region 51949
Tssr51950 5 96115602 to 96115613 11 - TSS region transcription start site region 51950
Tssr51951 5 96131215 to 96131238 23 - TSS region transcription start site region 51951
Cpgi16073 5 96160669 to 96162960 2291 CpG island CpG island 16073
Tssr47392 5 96160757 to 96160765 8 + TSS region transcription start site region 47392
Tssr51952 5 96161748 to 96161774 26 - TSS region transcription start site region 51952
Tssr51953 5 96162078 to 96162097 19 - TSS region transcription start site region 51953
Tssr1549 5 96162170 to 96162216 46 - TSS region transcription start site region 1549
Tssr51954 5 96162457 to 96162471 14 - TSS region transcription start site region 51954
Tssr51955 5 96162482 to 96162576 94 - TSS region transcription start site region 51955
Tssr51956 5 96162584 to 96162595 11 - TSS region transcription start site region 51956
Tssr51957 5 96162615 to 96162622 7 - TSS region transcription start site region 51957
Tssr51958 5 96163008 to 96163019 11 - TSS region transcription start site region 51958
Tssr47393 5 96163215 to 96163222 7 + TSS region transcription start site region 47393
Tssr51959 5 96163576 to 96163579 3 - TSS region transcription start site region 51959
Tssr51960 5 96164119 to 96164142 23 - TSS region transcription start site region 51960
Tssr51961 5 96164147 to 96164201 54 - TSS region transcription start site region 51961
Tssr47394 5 96173881 to 96173912 31 + TSS region transcription start site region 47394
Gm2840 5 96173940 to 96174350 410 + pseudogene predicted gene 2840
Tssr47395 5 96209463 to 96209488 25 + TSS region transcription start site region 47395
Mrpl1 5 96209498 to 96266727 57229 + protein coding gene mitochondrial ribosomal protein L1
Tssr47396 5 96209744 to 96209763 19 + TSS region transcription start site region 47396
Cpgi16074 5 96209963 to 96210411 448 CpG island CpG island 16074
Tssr51962 5 96210005 to 96210026 21 - TSS region transcription start site region 51962
Tssr47397 5 96210128 to 96210161 33 + TSS region transcription start site region 47397
Cpgi16075 5 96331086 to 96331474 388 CpG island CpG island 16075