Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 5:93163416-96170374

Filter by:
137 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sept11 5 93093437 to 93176447 83010 + protein coding gene septin 11
Tssr51936 5 93165339 to 93165381 42 - TSS region transcription start site region 51936
Tssr47364 5 93167610 to 93167623 13 + TSS region transcription start site region 47364
Tssr47365 5 93169950 to 93169966 16 + TSS region transcription start site region 47365
Tssr47366 5 93171366 to 93171386 20 + TSS region transcription start site region 47366
Tssr47367 5 93172472 to 93172484 12 + TSS region transcription start site region 47367
Tssr47368 5 93172764 to 93172778 14 + TSS region transcription start site region 47368
Tssr47369 5 93172792 to 93172815 23 + TSS region transcription start site region 47369
Tssr47370 5 93172935 to 93172950 15 + TSS region transcription start site region 47370
Tssr47371 5 93172994 to 93173019 25 + TSS region transcription start site region 47371
Tssr47372 5 93173027 to 93173047 20 + TSS region transcription start site region 47372
Tssr47373 5 93173062 to 93173104 42 + TSS region transcription start site region 47373
Tssr47374 5 93173584 to 93173633 49 + TSS region transcription start site region 47374
Tssr47375 5 93173677 to 93173681 4 + TSS region transcription start site region 47375
Tssr47376 5 93175352 to 93175355 3 + TSS region transcription start site region 47376
Gm43682 5 93176970 to 93179059 2089 + unclassified gene predicted gene 43682
Ccni 5 93181933 to 93206495 24562 - protein coding gene cyclin I
Gm43681 5 93183856 to 93185758 1902 - unclassified gene predicted gene 43681
Tssr51937 5 93190277 to 93190285 8 - TSS region transcription start site region 51937
Tssr51938 5 93192942 to 93192946 4 - TSS region transcription start site region 51938
Gm2986 5 93195798 to 93196179 381 + pseudogene predicted gene 2986
Tssr51939 5 93205364 to 93205376 12 - TSS region transcription start site region 51939
Tssr47377 5 93205470 to 93205483 13 + TSS region transcription start site region 47377
Cpgi16071 5 93205478 to 93207025 1547 CpG island CpG island 16071
Tssr47378 5 93205644 to 93205679 35 + TSS region transcription start site region 47378
Tssr51940 5 93205714 to 93205718 4 - TSS region transcription start site region 51940
Tssr47379 5 93206003 to 93206020 17 + TSS region transcription start site region 47379
Tssr47380 5 93206046 to 93206052 6 + TSS region transcription start site region 47380
Tssr51941 5 93206442 to 93206470 28 - TSS region transcription start site region 51941
Tssr51942 5 93206489 to 93206498 9 - TSS region transcription start site region 51942
2010109A12Rik 5 93206518 to 93213474 6956 + protein coding gene RIKEN cDNA 2010109A12 gene
D5Dcr72 5 93210039 to 93210134 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 72
Gm42116 5 93221647 to 93255191 33544 + lncRNA gene predicted gene, 42116
Cpgi16072 5 93266880 to 93268616 1736 CpG island CpG island 16072
Tssr47381 5 93267547 to 93267556 9 + TSS region transcription start site region 47381
Tssr47382 5 93267562 to 93267605 43 + TSS region transcription start site region 47382
Ccng2 5 93267573 to 93276231 8658 + protein coding gene cyclin G2
Tssr47383 5 93268247 to 93268289 42 + TSS region transcription start site region 47383
Tssr47384 5 93268502 to 93268522 20 + TSS region transcription start site region 47384
Tssr47385 5 93268532 to 93268578 46 + TSS region transcription start site region 47385
Tssr47386 5 93270502 to 93270506 4 + TSS region transcription start site region 47386
Tssr47387 5 93270861 to 93270902 41 + TSS region transcription start site region 47387
Dbsty2 5 93297205 to 93297366 161 QTL diabesity 2
Cocrb6 5 93297205 to 93297366 161 QTL cocaine related behavior 6
D5Mit7 5 93297205 to 93297366 161 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 7
Ahl16 5 93297205 to 93297366 161 QTL age related hearing loss, early onset 16
Thyls2 5 93297205 to 93297366 161 QTL thymic lymphoma susceptibility 2
D5Mit18 5 93297209 to 93297446 237 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 18
Tssr51943 5 93306426 to 93306432 6 - TSS region transcription start site region 51943
Tssr51944 5 93306438 to 93306447 9 - TSS region transcription start site region 51944
Tssr51945 5 93306450 to 93306458 8 - TSS region transcription start site region 51945
Kat2b-ps 5 93390602 to 93393091 2489 - pseudogene K(lysine) acetyltransferase 2B, pseudogene
Gm18118 5 93410762 to 93411860 1098 + pseudogene predicted gene, 18118
Gm43224 5 93421672 to 93423396 1724 + pseudogene predicted gene 43224
Gm16427 5 93482115 to 93536331 54216 - protein coding gene predicted gene 16427
C87414 5 93635185 to 93671463 36278 - protein coding gene expressed sequence C87414
Gm43225 5 93694994 to 93697721 2727 - pseudogene predicted gene 43225
Gm43226 5 93706474 to 93706732 258 + pseudogene predicted gene 43226
Gm7919 5 93738096 to 93740783 2687 + pseudogene predicted gene 7919
Gm43227 5 93770300 to 93771800 1500 + pseudogene predicted gene 43227
Gm7792 5 93843776 to 93856107 12331 + protein coding gene predicted gene 7792
Gm16429 5 93925013 to 93929195 4182 - protein coding gene predicted gene 16429
Gm6346 5 93936755 to 93939485 2730 + pseudogene predicted gene 6346
Gm3089 5 93996481 to 93999174 2693 + pseudogene predicted gene 3089
BC061212 5 94066454 to 94070545 4091 - protein coding gene cDNA sequence BC061212
Gm6351 5 94076385 to 94080997 4612 + protein coding gene predicted gene 6351
Gm3106 5 94218005 to 94222010 4005 + protein coding gene predicted gene 3106
A430089I19Rik 5 94302519 to 94306796 4277 - protein coding gene RIKEN cDNA A430089I19 gene
Gm6502 5 94314435 to 94317255 2820 + protein coding gene predicted gene 6502
AA792892 5 94377340 to 94384334 6994 + protein coding gene expressed sequence AA792892
BC080696 5 94434357 to 94436925 2568 - pseudogene cDNA sequence BC080696
Gm7682 5 94445784 to 94448653 2869 + protein coding gene predicted gene 7682
Gm3139 5 94526284 to 94538367 12083 + protein coding gene predicted gene 3139
Gm42117 5 94586408 to 94607374 20966 + lncRNA gene predicted gene, 42117
Gm3147 5 94612305 to 94616458 4153 - protein coding gene predicted gene 3147
Gm6509 5 94623979 to 94626848 2869 + protein coding gene predicted gene 6509
Gm6205 5 94648416 to 94685374 36958 + protein coding gene predicted gene 6205
Gm42561 5 94733356 to 94736087 2731 + pseudogene predicted gene 42561
Gm7663 5 94769619 to 94772066 2447 - pseudogene predicted gene 7663
Gm46934 5 94778216 to 94780918 2702 + protein coding gene predicted gene, 46934
Gm3183 5 94873783 to 94877205 3422 + protein coding gene predicted gene 3183
Gm42118 5 94925345 to 94946310 20965 + lncRNA gene predicted gene, 42118
Gm3176 5 94951537 to 94954134 2597 - pseudogene predicted gene 3176
Gm7647 5 94963018 to 94965694 2676 + pseudogene predicted gene 7647
Gm6367 5 94988626 to 95026536 37910 + protein coding gene predicted gene 6367
Gm46939 5 95056149 to 95059665 3516 + pseudogene predicted gene, 46939
Gm42661 5 95063576 to 95066307 2731 + pseudogene predicted gene 42661
Gm7939 5 95100024 to 95102282 2258 - pseudogene predicted gene 7939
Gm7942 5 95108456 to 95111158 2702 + protein coding gene predicted gene 7942
Gm16513 5 95182624 to 95195342 12718 + protein coding gene predicted gene, Gm16513
Gm10424 5 95268729 to 95272884 4155 - protein coding gene predicted gene 10424
Gm6468 5 95280462 to 95283192 2730 + pseudogene predicted gene 6468
Gm3259 5 95305923 to 95343575 37652 + protein coding gene predicted gene 3259
Gm32072 5 95381054 to 95383784 2730 + pseudogene predicted gene, 32072
Gm7961 5 95417110 to 95419751 2641 - pseudogene predicted gene 7961
Gm46935 5 95425935 to 95428637 2702 + protein coding gene predicted gene, 46935
Gm42662 5 95425935 to 95428628 2693 - pseudogene predicted gene 42662
D5Ertd577e 5 95456806 to 95485587 28781 + protein coding gene DNA segment, Chr 5, ERATO Doi 577, expressed
Gm3286 5 95510742 to 95522402 11660 + protein coding gene predicted gene 3286
Gm7971 5 95590835 to 95595018 4183 - protein coding gene predicted gene 7971
Gm6348 5 95602578 to 95605308 2730 + pseudogene predicted gene 6348
Gm3302 5 95662305 to 95664998 2693 + pseudogene predicted gene 3302
Gm7978 5 95732092 to 95736173 4081 - protein coding gene predicted gene 7978
Gm7982 5 95742014 to 95746617 4603 + protein coding gene predicted gene 7982
E330014E10Rik 5 95775870 to 95804230 28360 + protein coding gene RIKEN cDNA E330014E10 gene
Gm42714 5 95834961 to 95837450 2489 - pseudogene predicted gene 42714
Gm5559 5 95861714 to 95862715 1001 + pseudogene predicted gene 5559
Gm25937 5 95867334 to 95867440 106 + snRNA gene predicted gene, 25937
D5Mit423 5 95943626 to 95943749 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 423
Tssr47388 5 95956916 to 95956933 17 + TSS region transcription start site region 47388
Cxcl13 5 95956951 to 95961068 4117 + protein coding gene chemokine (C-X-C motif) ligand 13
Tssr47389 5 95958716 to 95958738 22 + TSS region transcription start site region 47389
Tssr47390 5 95960309 to 95960314 5 + TSS region transcription start site region 47390
Tssr47391 5 95973920 to 95973924 4 + TSS region transcription start site region 47391
Gm7993 5 95974240 to 95975623 1383 + pseudogene predicted gene 7993
D5Mit313 5 96035624 to 96035733 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 313
Cnot6l 5 96070333 to 96164171 93838 - protein coding gene CCR4-NOT transcription complex, subunit 6-like
Tssr51946 5 96077145 to 96077161 16 - TSS region transcription start site region 51946
Tssr51947 5 96092514 to 96092518 4 - TSS region transcription start site region 51947
Tssr51948 5 96093089 to 96093093 4 - TSS region transcription start site region 51948
Tssr51949 5 96093351 to 96093355 4 - TSS region transcription start site region 51949
Tssr51950 5 96115602 to 96115613 11 - TSS region transcription start site region 51950
Tssr51951 5 96131215 to 96131238 23 - TSS region transcription start site region 51951
Cpgi16073 5 96160669 to 96162960 2291 CpG island CpG island 16073
Tssr47392 5 96160757 to 96160765 8 + TSS region transcription start site region 47392
Tssr51952 5 96161748 to 96161774 26 - TSS region transcription start site region 51952
Tssr51953 5 96162078 to 96162097 19 - TSS region transcription start site region 51953
Tssr1549 5 96162170 to 96162216 46 - TSS region transcription start site region 1549
Tssr51954 5 96162457 to 96162471 14 - TSS region transcription start site region 51954
Tssr51955 5 96162482 to 96162576 94 - TSS region transcription start site region 51955
Tssr51956 5 96162584 to 96162595 11 - TSS region transcription start site region 51956
Tssr51957 5 96162615 to 96162622 7 - TSS region transcription start site region 51957
Tssr51958 5 96163008 to 96163019 11 - TSS region transcription start site region 51958
Tssr47393 5 96163215 to 96163222 7 + TSS region transcription start site region 47393
Tssr51959 5 96163576 to 96163579 3 - TSS region transcription start site region 51959
Tssr51960 5 96164119 to 96164142 23 - TSS region transcription start site region 51960
Tssr51961 5 96164147 to 96164201 54 - TSS region transcription start site region 51961