Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:90818837-93828846

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468 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43086 5 90832328 to 90835951 3623 + lincRNA gene predicted gene 43086
Tssr47211 5 90868328 to 90868331 3 + TSS region transcription start site region 47211
Tssr47212 5 90876315 to 90876331 16 + TSS region transcription start site region 47212
Tssr47213 5 90881997 to 90882013 16 + TSS region transcription start site region 47213
Tssr47214 5 90887910 to 90887915 5 + TSS region transcription start site region 47214
Tssr51806 5 90890471 to 90890478 7 - TSS region transcription start site region 51806
Cpgi16043 5 90890847 to 90891510 663 CpG island CpG island 16043
Tssr47215 5 90891234 to 90891250 16 + TSS region transcription start site region 47215
Cxcl1 5 90891241 to 90893115 1874 + protein coding gene chemokine (C-X-C motif) ligand 1
Tssr47216 5 90891831 to 90891842 11 + TSS region transcription start site region 47216
Tssr47217 5 90892480 to 90892491 11 + TSS region transcription start site region 47217
Tssr47218 5 90892501 to 90892518 17 + TSS region transcription start site region 47218
Tssr47219 5 90892519 to 90892614 95 + TSS region transcription start site region 47219
Tssr47220 5 90892615 to 90892640 25 + TSS region transcription start site region 47220
Tssr47221 5 90892654 to 90892666 12 + TSS region transcription start site region 47221
Tssr47222 5 90892725 to 90892735 10 + TSS region transcription start site region 47222
Tssr47223 5 90893124 to 90893133 9 + TSS region transcription start site region 47223
Gm22816 5 90893380 to 90893496 116 + rRNA gene predicted gene, 22816
Tssr51807 5 90897522 to 90897527 5 - TSS region transcription start site region 51807
Tssr51808 5 90897584 to 90897627 43 - TSS region transcription start site region 51808
Tssr51809 5 90900708 to 90900753 45 - TSS region transcription start site region 51809
Tssr51810 5 90903114 to 90903143 29 - TSS region transcription start site region 51810
Tssr51811 5 90903188 to 90903197 9 - TSS region transcription start site region 51811
Tssr47224 5 90903687 to 90903709 22 + TSS region transcription start site region 47224
Tssr47225 5 90903809 to 90903811 2 + TSS region transcription start site region 47225
Tssr47226 5 90903864 to 90903880 16 + TSS region transcription start site region 47226
Cxcl2 5 90903899 to 90905938 2039 + protein coding gene chemokine (C-X-C motif) ligand 2
Tssr47227 5 90904069 to 90904074 5 + TSS region transcription start site region 47227
Tssr47228 5 90904112 to 90904137 25 + TSS region transcription start site region 47228
Tssr47229 5 90904139 to 90904158 19 + TSS region transcription start site region 47229
Tssr47230 5 90904164 to 90904183 19 + TSS region transcription start site region 47230
Tssr47231 5 90904184 to 90904213 29 + TSS region transcription start site region 47231
Tssr51812 5 90904201 to 90904227 26 - TSS region transcription start site region 51812
Tssr51813 5 90904233 to 90904244 11 - TSS region transcription start site region 51813
Tssr47232 5 90904349 to 90904360 11 + TSS region transcription start site region 47232
Tssr47233 5 90904366 to 90904410 44 + TSS region transcription start site region 47233
Tssr47234 5 90904438 to 90904445 7 + TSS region transcription start site region 47234
Tssr47235 5 90905188 to 90905203 15 + TSS region transcription start site region 47235
Tssr51814 5 90905207 to 90905218 11 - TSS region transcription start site region 51814
Tssr47236 5 90905208 to 90905242 34 + TSS region transcription start site region 47236
Tssr51815 5 90905241 to 90905264 23 - TSS region transcription start site region 51815
Tssr47237 5 90905257 to 90905262 5 + TSS region transcription start site region 47237
Tssr47238 5 90905263 to 90905321 58 + TSS region transcription start site region 47238
Tssr51816 5 90905275 to 90905297 22 - TSS region transcription start site region 51816
Tssr47239 5 90905323 to 90905326 3 + TSS region transcription start site region 47239
Tssr47240 5 90905335 to 90905345 10 + TSS region transcription start site region 47240
Tssr47241 5 90905350 to 90905374 24 + TSS region transcription start site region 47241
Tssr47242 5 90905387 to 90905399 12 + TSS region transcription start site region 47242
Tssr47243 5 90905410 to 90905417 7 + TSS region transcription start site region 47243
Tssr47244 5 90905444 to 90905456 12 + TSS region transcription start site region 47244
Tssr47245 5 90905464 to 90905473 9 + TSS region transcription start site region 47245
Tssr47246 5 90905515 to 90905527 12 + TSS region transcription start site region 47246
Tssr47247 5 90905559 to 90905581 22 + TSS region transcription start site region 47247
Tssr47248 5 90905622 to 90905640 18 + TSS region transcription start site region 47248
Tssr47249 5 90905692 to 90905701 9 + TSS region transcription start site region 47249
Tssr47250 5 90905830 to 90905839 9 + TSS region transcription start site region 47250
Tssr47251 5 90905894 to 90905904 10 + TSS region transcription start site region 47251
Tssr47252 5 90905946 to 90905956 10 + TSS region transcription start site region 47252
Gm42530 5 90922732 to 90924902 2170 + lincRNA gene predicted gene 42530
Tssr47253 5 90930739 to 90930792 53 + TSS region transcription start site region 47253
Tssr47254 5 90930822 to 90930833 11 + TSS region transcription start site region 47254
Cpgi16044 5 90930920 to 90931845 925 CpG island CpG island 16044
Tssr47255 5 90931089 to 90931112 23 + TSS region transcription start site region 47255
Mthfd2l 5 90931196 to 91021368 90172 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
Tssr47256 5 90931209 to 90931311 102 + TSS region transcription start site region 47256
Tssr51817 5 90932952 to 90932958 6 - TSS region transcription start site region 51817
E330024J20Rik 5 90934163 to 90937691 3528 unclassified gene RIKEN cDNA E330024J20 gene
Tssr47257 5 90935087 to 90935105 18 + TSS region transcription start site region 47257
Tssr51818 5 91014498 to 91014504 6 - TSS region transcription start site region 51818
Tssr47258 5 91027457 to 91027492 35 + TSS region transcription start site region 47258
Epgn 5 91027517 to 91035212 7695 + protein coding gene epithelial mitogen
Gm19610 5 91051871 to 91074773 22902 - antisense lncRNA gene predicted gene, 19610
D5Ertd566e 5 91070553 to 91070787 234 DNA segment DNA segment, Chr 5, ERATO Doi 566, expressed
Tssr47259 5 91074297 to 91074308 11 + TSS region transcription start site region 47259
Cpgi16045 5 91074484 to 91075021 537 CpG island CpG island 16045
Tssr47260 5 91074611 to 91074629 18 + TSS region transcription start site region 47260
Ereg 5 91074622 to 91093646 19024 + protein coding gene epiregulin
Tssr47261 5 91138043 to 91138045 2 + TSS region transcription start site region 47261
Cpgi16046 5 91139380 to 91140026 646 CpG island CpG island 16046
Tssr47262 5 91139591 to 91139607 16 + TSS region transcription start site region 47262
Areg 5 91139599 to 91148432 8833 + protein coding gene amphiregulin
Tssr47263 5 91141052 to 91141058 6 + TSS region transcription start site region 47263
5033428C03Rik 5 91209381 to 91210842 1461 unclassified gene RIKEN cDNA 5033428C03 gene
Gm23092 5 91217898 to 91218004 106 - snRNA gene predicted gene, 23092
Gm19619 5 91257571 to 91283076 25505 - lincRNA gene predicted gene, 19619
D5Mit360 5 91279093 to 91279198 105 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 360
Tssr51819 5 91283045 to 91283057 12 - TSS region transcription start site region 51819
Cpgi16047 5 91302019 to 91302240 221 CpG island CpG island 16047
Btc 5 91357261 to 91402994 45733 - protein coding gene betacellulin, epidermal growth factor family member
D5Mit6 5 91374504 to 91374638 134 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 6
Tssr51820 5 91402844 to 91402851 7 - TSS region transcription start site region 51820
Tssr51821 5 91402880 to 91402885 5 - TSS region transcription start site region 51821
Tssr51822 5 91402905 to 91402922 17 - TSS region transcription start site region 51822
Tssr51823 5 91403002 to 91403024 22 - TSS region transcription start site region 51823
Gm42110 5 91424312 to 91449889 25577 - lncRNA gene predicted gene, 42110
Tssr47264 5 91450031 to 91450040 9 + TSS region transcription start site region 47264
Cpgi16048 5 91517431 to 91518249 818 CpG island CpG island 16048
Tssr47265 5 91517678 to 91517694 16 + TSS region transcription start site region 47265
Parm1 5 91517700 to 91624011 106311 + protein coding gene prostate androgen-regulated mucin-like protein 1
Tssr47266 5 91517701 to 91517719 18 + TSS region transcription start site region 47266
Tssr47267 5 91517732 to 91517749 17 + TSS region transcription start site region 47267
Tssr47268 5 91517751 to 91517762 11 + TSS region transcription start site region 47268
Gm36222 5 91708461 to 91733365 24904 + lncRNA gene predicted gene, 36222
Trmt112-ps1 5 91737705 to 91738079 374 - pseudogene tRNA methyltransferase 11-2, pseudogene 1
Gm7832 5 91760696 to 91761575 879 - pseudogene predicted gene 7832
Tssr51824 5 91761609 to 91761647 38 - TSS region transcription start site region 51824
Tssr51825 5 91761680 to 91761686 6 - TSS region transcription start site region 51825
Gm28271 5 91763325 to 91767914 4589 - lincRNA gene predicted gene 28271
1700063O14Rik 5 91766242 to 91767300 1058 - lincRNA gene RIKEN cDNA 1700063O14 gene
Tssr1546 5 91770186 to 91770190 4 + TSS region transcription start site region 1546
Gm19649 5 91786061 to 91786882 821 - pseudogene predicted gene, 19649
Gm43596 5 91788598 to 91789481 883 + pseudogene predicted gene 43596
Gm5558 5 91806579 to 91807073 494 - pseudogene predicted gene 5558
Tssr51826 5 91807118 to 91807129 11 - TSS region transcription start site region 51826
Gm36303 5 91831379 to 91850950 19571 - lncRNA gene predicted gene, 36303
Gm36357 5 91861741 to 91909746 48005 + lncRNA gene predicted gene, 36357
4930570G05Rik 5 91911399 to 91913402 2003 lncRNA gene RIKEN cDNA 4930570G05 gene
Gm43688 5 91911400 to 91913403 2003 - lincRNA gene predicted gene 43688
Rchy1 5 91948904 to 91963068 14164 - protein coding gene ring finger and CHY zinc finger domain containing 1
Tssr51827 5 91949613 to 91949624 11 - TSS region transcription start site region 51827
Gm43039 5 91958000 to 91958962 962 - unclassified gene predicted gene 43039
Tssr51828 5 91961447 to 91961462 15 - TSS region transcription start site region 51828
Tssr51829 5 91961607 to 91961612 5 - TSS region transcription start site region 51829
Tssr51830 5 91962282 to 91962293 11 - TSS region transcription start site region 51830
Tssr51831 5 91962315 to 91962324 9 - TSS region transcription start site region 51831
Tssr47269 5 91962425 to 91962428 3 + TSS region transcription start site region 47269
Cpgi16049 5 91962430 to 91963401 971 CpG island CpG island 16049
Tssr47270 5 91962440 to 91962445 5 + TSS region transcription start site region 47270
Tssr47271 5 91962466 to 91962473 7 + TSS region transcription start site region 47271
Tssr51832 5 91962715 to 91962740 25 - TSS region transcription start site region 51832
Tssr51833 5 91962839 to 91962887 48 - TSS region transcription start site region 51833
Tssr47272 5 91962875 to 91962910 35 + TSS region transcription start site region 47272
Thap6 5 91962882 to 91972137 9255 + pseudogene THAP domain containing 6
Tssr47273 5 91962922 to 91962942 20 + TSS region transcription start site region 47273
Tssr47274 5 91962944 to 91962958 14 + TSS region transcription start site region 47274
Tssr51834 5 91963080 to 91963105 25 - TSS region transcription start site region 51834
Tssr51835 5 91963106 to 91963137 31 - TSS region transcription start site region 51835
Tssr47275 5 91963317 to 91963327 10 + TSS region transcription start site region 47275
Tssr47276 5 91963347 to 91963359 12 + TSS region transcription start site region 47276
Tssr51836 5 91972258 to 91972281 23 - TSS region transcription start site region 51836
Gm24113 5 91982705 to 91982980 275 + unclassified non-coding RNA gene predicted gene, 24113
Tssr47277 5 91987471 to 91987479 8 + TSS region transcription start site region 47277
Odaph 5 91987473 to 91995317 7844 + protein coding gene odontogenesis associated phosphoprotein
Cdkl2 5 92006074 to 92043042 36968 - protein coding gene cyclin-dependent kinase-like 2 (CDC2-related kinase)
Tssr51837 5 92015330 to 92015334 4 - TSS region transcription start site region 51837
Gm46915 5 92016095 to 92017114 1019 - protein coding gene predicted gene, 46915
Cpgi16050 5 92042264 to 92043379 1115 CpG island CpG island 16050
Tssr51838 5 92042630 to 92042701 71 - TSS region transcription start site region 51838
Tssr51839 5 92042999 to 92043051 52 - TSS region transcription start site region 51839
Gm26582 5 92043064 to 92055960 12896 + lincRNA gene predicted gene, 26582
Tssr51840 5 92050593 to 92050595 2 - TSS region transcription start site region 51840
G3bp2 5 92052146 to 92083719 31573 - protein coding gene GTPase activating protein (SH3 domain) binding protein 2
Gm22728 5 92056064 to 92056192 128 - snoRNA gene predicted gene, 22728
Gm42111 5 92061097 to 92062471 1374 - lncRNA gene predicted gene, 42111
Tssr51841 5 92065635 to 92065640 5 - TSS region transcription start site region 51841
Gm46933 5 92074726 to 92084165 9439 + protein coding gene predicted gene, 46933
Tssr51842 5 92075651 to 92075655 4 - TSS region transcription start site region 51842
Cpgi16051 5 92082794 to 92084111 1317 CpG island CpG island 16051
Tssr47278 5 92083429 to 92083441 12 + TSS region transcription start site region 47278
Tssr51843 5 92083455 to 92083466 11 - TSS region transcription start site region 51843
Tssr51844 5 92083667 to 92083726 59 - TSS region transcription start site region 51844
Tssr51845 5 92112248 to 92112276 28 - TSS region transcription start site region 51845
Tssr47279 5 92112996 to 92113015 19 + TSS region transcription start site region 47279
Tssr47280 5 92113027 to 92113036 9 + TSS region transcription start site region 47280
Gm24931 5 92118177 to 92118283 106 - rRNA gene predicted gene, 24931
D430040L24Rik 5 92126174 to 92129749 3575 + lncRNA gene RIKEN cDNA D430040L24 gene
Tssr47281 5 92127293 to 92127316 23 + TSS region transcription start site region 47281
Tssr47282 5 92127339 to 92127349 10 + TSS region transcription start site region 47282
Tssr47283 5 92127350 to 92127357 7 + TSS region transcription start site region 47283
Cpgi16052 5 92137467 to 92138643 1176 CpG island CpG island 16052
Tssr51846 5 92137637 to 92137702 65 - TSS region transcription start site region 51846
Tssr51847 5 92137733 to 92137762 29 - TSS region transcription start site region 51847
Tssr51848 5 92137769 to 92137786 17 - TSS region transcription start site region 51848
Tssr47284 5 92137849 to 92137870 21 + TSS region transcription start site region 47284
Tssr47285 5 92137896 to 92137939 43 + TSS region transcription start site region 47285
Uso1 5 92137938 to 92202798 64860 + protein coding gene USO1 vesicle docking factor
Tssr47286 5 92137940 to 92137974 34 + TSS region transcription start site region 47286
Gm15710 5 92140294 to 92140929 635 - pseudogene predicted gene 15710
Tssr51849 5 92140965 to 92140977 12 - TSS region transcription start site region 51849
Gm43040 5 92191360 to 92191917 557 - unclassified gene predicted gene 43040
Gm25290 5 92193322 to 92193465 143 + snoRNA gene predicted gene, 25290
U90926 5 92209895 to 92215408 5513 - protein coding gene cDNA sequence U90926
Gm42113 5 92210177 to 92212757 2580 + lncRNA gene predicted gene, 42113
Tssr51850 5 92215345 to 92215354 9 - TSS region transcription start site region 51850
Gm42112 5 92216563 to 92224008 7445 + lncRNA gene predicted gene, 42112
Ppef2 5 92226679 to 92256278 29599 - protein coding gene protein phosphatase, EF hand calcium-binding domain 2
Cpgi16053 5 92239817 to 92240085 268 CpG island CpG island 16053
D5Mit87 5 92250640 to 92250805 165 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 87
Cpgi16054 5 92253037 to 92253319 282 CpG island CpG island 16054
Tssr51851 5 92256293 to 92256304 11 - TSS region transcription start site region 51851
Tssr51852 5 92256308 to 92256330 22 - TSS region transcription start site region 51852
Tssr51853 5 92256333 to 92256340 7 - TSS region transcription start site region 51853
Naaa 5 92257659 to 92278170 20511 - protein coding gene N-acylethanolamine acid amidase
Tssr51854 5 92262781 to 92262788 7 - TSS region transcription start site region 51854
Tssr51855 5 92262792 to 92262799 7 - TSS region transcription start site region 51855
Tssr51856 5 92263654 to 92263675 21 - TSS region transcription start site region 51856
Cpgi16055 5 92276896 to 92277184 288 CpG island CpG island 16055
Cpgi16056 5 92277558 to 92278313 755 CpG island CpG island 16056
Tssr51857 5 92278139 to 92278150 11 - TSS region transcription start site region 51857
Tssr51858 5 92278155 to 92278171 16 - TSS region transcription start site region 51858