Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:90579218-90859225

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5830473C10Rik 5 90561107 to 90597871 36764 + protein coding gene RIKEN cDNA 5830473C10 gene
Gm42109 5 90574145 to 90584972 10827 - lncRNA gene predicted gene, 42109
Tssr47167 5 90583251 to 90583255 4 + TSS region transcription start site region 47167
Cpgi16039 5 90588846 to 90589132 286 CpG island CpG island 16039
Rassf6 5 90603076 to 90640657 37581 - protein coding gene Ras association (RalGDS/AF-6) domain family member 6
Tssr51790 5 90639648 to 90639662 14 - TSS region transcription start site region 51790
Tssr51791 5 90639672 to 90639683 11 - TSS region transcription start site region 51791
Cpgi16040 5 90640188 to 90640658 470 CpG island CpG island 16040
Tssr51792 5 90640417 to 90640425 8 - TSS region transcription start site region 51792
Tssr51793 5 90640464 to 90640539 75 - TSS region transcription start site region 51793
Tssr51794 5 90640602 to 90640695 93 - TSS region transcription start site region 51794
Tssr51795 5 90654424 to 90654437 13 - TSS region transcription start site region 51795
Cpgi16041 5 90658340 to 90658521 181 CpG island CpG island 16041
Tssr1543 5 90690120 to 90690122 2 + TSS region transcription start site region 1543
Tssr51796 5 90694565 to 90694569 4 - TSS region transcription start site region 51796
Tssr51797 5 90696091 to 90696094 3 - TSS region transcription start site region 51797
Tssr51798 5 90696102 to 90696116 14 - TSS region transcription start site region 51798
Tssr51799 5 90696117 to 90696139 22 - TSS region transcription start site region 51799
Tssr1544 5 90696314 to 90696337 23 + TSS region transcription start site region 1544
Tssr51800 5 90700205 to 90700210 5 - TSS region transcription start site region 51800
Tssr47168 5 90703210 to 90703228 18 + TSS region transcription start site region 47168
Gm36084 5 90714987 to 90729296 14309 + lncRNA gene predicted gene, 36084
Tssr47169 5 90719116 to 90719162 46 + TSS region transcription start site region 47169
Tssr47170 5 90719167 to 90719204 37 + TSS region transcription start site region 47170
Tssr47171 5 90719218 to 90719225 7 + TSS region transcription start site region 47171
Tssr47172 5 90722374 to 90722380 6 + TSS region transcription start site region 47172
Tssr47173 5 90723468 to 90723486 18 + TSS region transcription start site region 47173
Tssr47174 5 90723506 to 90723519 13 + TSS region transcription start site region 47174
Tssr47175 5 90723566 to 90723585 19 + TSS region transcription start site region 47175
Tssr47176 5 90739201 to 90739214 13 + TSS region transcription start site region 47176
Tssr47177 5 90744417 to 90744420 3 + TSS region transcription start site region 47177
Gm43090 5 90750525 to 90750838 313 + pseudogene predicted gene 43090
Cpgi16042 5 90759343 to 90759813 470 CpG island CpG island 16042
Tssr47178 5 90759349 to 90759367 18 + TSS region transcription start site region 47178
Cxcl5 5 90759360 to 90761624 2264 + protein coding gene chemokine (C-X-C motif) ligand 5
Tssr47179 5 90768476 to 90768496 20 + TSS region transcription start site region 47179
Tssr47180 5 90768511 to 90768526 15 + TSS region transcription start site region 47180
Ppbp 5 90768518 to 90770063 1545 + protein coding gene pro-platelet basic protein
Tssr1545 5 90768533 to 90768544 11 + TSS region transcription start site region 1545
Tssr47181 5 90768633 to 90768646 13 + TSS region transcription start site region 47181
Tssr47182 5 90768680 to 90768687 7 + TSS region transcription start site region 47182
Tssr47183 5 90769451 to 90769464 13 + TSS region transcription start site region 47183
Tssr47184 5 90769594 to 90769606 12 + TSS region transcription start site region 47184
Tssr47185 5 90769693 to 90769704 11 + TSS region transcription start site region 47185
Tssr47186 5 90769850 to 90769859 9 + TSS region transcription start site region 47186
Tssr51801 5 90770058 to 90770062 4 - TSS region transcription start site region 51801
Tssr47187 5 90771625 to 90771630 5 + TSS region transcription start site region 47187
Tssr47188 5 90772060 to 90772071 11 + TSS region transcription start site region 47188
Pf4 5 90772435 to 90773383 948 + protein coding gene platelet factor 4
Tssr47189 5 90772469 to 90772480 11 + TSS region transcription start site region 47189
Tssr47190 5 90772493 to 90772509 16 + TSS region transcription start site region 47190
Tssr47191 5 90772537 to 90772551 14 + TSS region transcription start site region 47191
Tssr47192 5 90773187 to 90773200 13 + TSS region transcription start site region 47192
Tssr47193 5 90786100 to 90786105 5 + TSS region transcription start site region 47193
Cxcl3 5 90786101 to 90788093 1992 + protein coding gene chemokine (C-X-C motif) ligand 3
Tssr47194 5 90786332 to 90786361 29 + TSS region transcription start site region 47194
Tssr47195 5 90786363 to 90786384 21 + TSS region transcription start site region 47195
Tssr47196 5 90786390 to 90786410 20 + TSS region transcription start site region 47196
Tssr47197 5 90786412 to 90786441 29 + TSS region transcription start site region 47197
Tssr51802 5 90786432 to 90786467 35 - TSS region transcription start site region 51802
Tssr47198 5 90786504 to 90786515 11 + TSS region transcription start site region 47198
Tssr47199 5 90786576 to 90786587 11 + TSS region transcription start site region 47199
Tssr47200 5 90786597 to 90786635 38 + TSS region transcription start site region 47200
Tssr51803 5 90786602 to 90786631 29 - TSS region transcription start site region 51803
Tssr51804 5 90786656 to 90786673 17 - TSS region transcription start site region 51804
Tssr47201 5 90786666 to 90786680 14 + TSS region transcription start site region 47201
Tssr47202 5 90787424 to 90787440 16 + TSS region transcription start site region 47202
Tssr47203 5 90787449 to 90787489 40 + TSS region transcription start site region 47203
Tssr47204 5 90787502 to 90787563 61 + TSS region transcription start site region 47204
Tssr47205 5 90787569 to 90787579 10 + TSS region transcription start site region 47205
Tssr47206 5 90787604 to 90787633 29 + TSS region transcription start site region 47206
Tssr47207 5 90787743 to 90787768 25 + TSS region transcription start site region 47207
Tssr51805 5 90789796 to 90789829 33 - TSS region transcription start site region 51805
Tssr47208 5 90794530 to 90794546 16 + TSS region transcription start site region 47208
Cxcl15 5 90794534 to 90803067 8533 + protein coding gene chemokine (C-X-C motif) ligand 15
Gm24322 5 90796186 to 90796255 69 - miRNA gene predicted gene, 24322
Tssr47209 5 90801648 to 90801664 16 + TSS region transcription start site region 47209
Gm43085 5 90803261 to 90806392 3131 + unclassified gene predicted gene 43085
Tssr47210 5 90804148 to 90804151 3 + TSS region transcription start site region 47210
Gm43086 5 90832328 to 90835951 3623 + lincRNA gene predicted gene 43086