Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:89883512-91053536

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334 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16036 5 89882218 to 89883935 1717 CpG island CpG island 16036
Tssr51730 5 89883465 to 89883512 47 - TSS region transcription start site region 51730
Eif5al3-ps 5 90132229 to 90132675 446 + pseudogene eukaryotic translation initiation factor 5A-like 3, pseudogene
D5Mit361 5 90155427 to 90155536 109 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 361
Gm35936 5 90193305 to 90200360 7055 + lncRNA gene predicted gene, 35936
Cox18 5 90214724 to 90223996 9272 - protein coding gene cytochrome c oxidase assembly protein 18
Cpgi16037 5 90223453 to 90224310 857 CpG island CpG island 16037
Tssr51731 5 90223923 to 90224020 97 - TSS region transcription start site region 51731
Ankrd17 5 90227166 to 90366572 139406 - protein coding gene ankyrin repeat domain 17
Tssr51732 5 90228979 to 90228998 19 - TSS region transcription start site region 51732
Tssr51733 5 90243779 to 90243825 46 - TSS region transcription start site region 51733
Tssr51734 5 90243850 to 90243861 11 - TSS region transcription start site region 51734
Tssr51735 5 90243979 to 90244051 72 - TSS region transcription start site region 51735
Tssr51736 5 90244354 to 90244366 12 - TSS region transcription start site region 51736
Tssr47071 5 90246799 to 90246823 24 + TSS region transcription start site region 47071
Tssr47072 5 90247269 to 90247274 5 + TSS region transcription start site region 47072
D5Ertd236e 5 90252136 to 90252377 241 DNA segment DNA segment, Chr 5, ERATO Doi 236, expressed
Tssr51737 5 90254770 to 90254812 42 - TSS region transcription start site region 51737
Tssr51738 5 90260154 to 90260183 29 - TSS region transcription start site region 51738
Tssr51739 5 90263336 to 90263369 33 - TSS region transcription start site region 51739
Tssr51740 5 90263381 to 90263395 14 - TSS region transcription start site region 51740
D5Wsu152e 5 90314711 to 90314959 248 DNA segment DNA segment, Chr 5, Wayne State University 152, expressed
AU017193 5 90327599 to 90331506 3907 unclassified gene expressed sequence AU017193
Tssr51741 5 90337688 to 90337693 5 - TSS region transcription start site region 51741
Tssr51742 5 90339724 to 90339802 78 - TSS region transcription start site region 51742
Cpgi16038 5 90365183 to 90367058 1875 CpG island CpG island 16038
Tssr51743 5 90365230 to 90365253 23 - TSS region transcription start site region 51743
Tssr47073 5 90365383 to 90365419 36 + TSS region transcription start site region 47073
Tssr51744 5 90366176 to 90366192 16 - TSS region transcription start site region 51744
Tssr51745 5 90366212 to 90366224 12 - TSS region transcription start site region 51745
Tssr51746 5 90366504 to 90366609 105 - TSS region transcription start site region 51746
Tssr47074 5 90366616 to 90366671 55 + TSS region transcription start site region 47074
Gm9958 5 90367204 to 90368487 1283 + unclassified gene predicted gene 9958
Tssr47075 5 90367571 to 90367589 18 + TSS region transcription start site region 47075
Gm10426 5 90377734 to 90379042 1308 protein coding gene predicted gene 10426
Gm43363 5 90397273 to 90399919 2646 + unclassified gene predicted gene 43363
Gm35999 5 90414392 to 90438690 24298 + lncRNA gene predicted gene, 35999
Tssr51747 5 90450154 to 90450158 4 - TSS region transcription start site region 51747
Tssr1537 5 90460786 to 90460791 5 + TSS region transcription start site region 1537
Tssr47076 5 90460892 to 90460908 16 + TSS region transcription start site region 47076
Alb 5 90460897 to 90476602 15705 + protein coding gene albumin
Tssr47077 5 90461708 to 90461750 42 + TSS region transcription start site region 47077
Tssr51748 5 90461748 to 90461775 27 - TSS region transcription start site region 51748
Tssr47078 5 90462691 to 90462744 53 + TSS region transcription start site region 47078
Tssr47079 5 90462746 to 90462747 1 + TSS region transcription start site region 47079
Tssr47080 5 90462749 to 90462776 27 + TSS region transcription start site region 47080
Tssr51749 5 90462768 to 90462803 35 - TSS region transcription start site region 51749
Tssr47081 5 90462777 to 90462807 30 + TSS region transcription start site region 47081
Tssr51750 5 90462804 to 90462834 30 - TSS region transcription start site region 51750
Tssr47082 5 90463390 to 90463397 7 + TSS region transcription start site region 47082
Tssr47083 5 90463704 to 90463713 9 + TSS region transcription start site region 47083
Tssr47084 5 90463984 to 90463985 1 + TSS region transcription start site region 47084
Tssr47085 5 90463991 to 90464055 64 + TSS region transcription start site region 47085
Tssr51751 5 90464023 to 90464035 12 - TSS region transcription start site region 51751
Tssr51752 5 90464046 to 90464099 53 - TSS region transcription start site region 51752
Tssr47086 5 90464065 to 90464078 13 + TSS region transcription start site region 47086
Tssr47087 5 90464080 to 90464085 5 + TSS region transcription start site region 47087
Tssr47088 5 90464086 to 90464119 33 + TSS region transcription start site region 47088
Tssr51753 5 90464100 to 90464161 61 - TSS region transcription start site region 51753
Tssr47089 5 90464121 to 90464122 1 + TSS region transcription start site region 47089
Tssr47090 5 90464127 to 90464156 29 + TSS region transcription start site region 47090
Tssr51754 5 90464167 to 90464170 3 - TSS region transcription start site region 51754
Tssr51755 5 90464174 to 90464188 14 - TSS region transcription start site region 51755
Tssr47091 5 90464497 to 90464570 73 + TSS region transcription start site region 47091
Tssr47092 5 90464845 to 90464943 98 + TSS region transcription start site region 47092
Tssr51756 5 90464880 to 90464914 34 - TSS region transcription start site region 51756
Tssr51757 5 90464924 to 90464945 21 - TSS region transcription start site region 51757
Tssr47093 5 90464948 to 90464952 4 + TSS region transcription start site region 47093
Tssr47094 5 90465176 to 90465188 12 + TSS region transcription start site region 47094
Tssr47095 5 90465864 to 90465944 80 + TSS region transcription start site region 47095
Tssr51758 5 90465892 to 90465913 21 - TSS region transcription start site region 51758
Tssr51759 5 90465952 to 90465970 18 - TSS region transcription start site region 51759
Tssr47096 5 90466167 to 90466171 4 + TSS region transcription start site region 47096
Tssr47097 5 90467340 to 90467353 13 + TSS region transcription start site region 47097
Tssr47098 5 90467358 to 90467372 14 + TSS region transcription start site region 47098
Tssr47099 5 90467807 to 90467811 4 + TSS region transcription start site region 47099
Tssr47100 5 90468476 to 90468548 72 + TSS region transcription start site region 47100
Tssr51760 5 90468512 to 90468536 24 - TSS region transcription start site region 51760
Tssr51761 5 90468549 to 90468583 34 - TSS region transcription start site region 51761
Tssr47101 5 90468551 to 90468613 62 + TSS region transcription start site region 47101
Tssr51762 5 90468588 to 90468617 29 - TSS region transcription start site region 51762
Tssr47102 5 90468620 to 90468631 11 + TSS region transcription start site region 47102
Tssr51763 5 90468621 to 90468661 40 - TSS region transcription start site region 51763
Tssr47103 5 90468635 to 90468650 15 + TSS region transcription start site region 47103
Tssr47104 5 90468651 to 90468662 11 + TSS region transcription start site region 47104
Tssr51764 5 90468664 to 90468691 27 - TSS region transcription start site region 51764
Tssr47105 5 90468668 to 90468679 11 + TSS region transcription start site region 47105
Tssr47106 5 90469495 to 90469567 72 + TSS region transcription start site region 47106
Tssr51765 5 90469527 to 90469543 16 - TSS region transcription start site region 51765
Tssr51766 5 90469556 to 90469604 48 - TSS region transcription start site region 51766
Tssr47107 5 90469571 to 90469580 9 + TSS region transcription start site region 47107
Tssr47108 5 90469582 to 90469617 35 + TSS region transcription start site region 47108
Tssr51767 5 90469609 to 90469630 21 - TSS region transcription start site region 51767
Tssr47109 5 90470123 to 90470127 4 + TSS region transcription start site region 47109
Tssr47110 5 90470733 to 90470809 76 + TSS region transcription start site region 47110
Tssr51768 5 90470768 to 90470788 20 - TSS region transcription start site region 51768
Tssr51769 5 90470823 to 90470844 21 - TSS region transcription start site region 51769
Tssr47111 5 90471816 to 90471820 4 + TSS region transcription start site region 47111
Tssr47112 5 90471998 to 90472052 54 + TSS region transcription start site region 47112
Tssr51770 5 90472024 to 90472103 79 - TSS region transcription start site region 51770
Tssr47113 5 90472057 to 90472073 16 + TSS region transcription start site region 47113
Tssr47114 5 90472076 to 90472108 32 + TSS region transcription start site region 47114
Tssr1538 5 90472112 to 90472120 8 + TSS region transcription start site region 1538
Tssr1539 5 90472122 to 90472125 3 - TSS region transcription start site region 1539
Tssr47115 5 90472455 to 90472481 26 + TSS region transcription start site region 47115
Tssr51771 5 90472492 to 90472561 69 - TSS region transcription start site region 51771
Tssr47116 5 90472495 to 90472506 11 + TSS region transcription start site region 47116
Tssr47117 5 90472528 to 90472539 11 + TSS region transcription start site region 47117
Tssr47118 5 90472543 to 90472575 32 + TSS region transcription start site region 47118
Tssr47119 5 90472579 to 90472605 26 + TSS region transcription start site region 47119
Tssr51772 5 90472672 to 90472686 14 - TSS region transcription start site region 51772
Tssr47120 5 90474558 to 90474682 124 + TSS region transcription start site region 47120
Tssr51773 5 90474611 to 90474645 34 - TSS region transcription start site region 51773
Tssr51774 5 90474669 to 90474705 36 - TSS region transcription start site region 51774
Tssr47121 5 90475264 to 90475312 48 + TSS region transcription start site region 47121
Tssr51775 5 90475299 to 90475336 37 - TSS region transcription start site region 51775
Tssr47122 5 90476466 to 90476577 111 + TSS region transcription start site region 47122
Tssr51776 5 90476486 to 90476511 25 - TSS region transcription start site region 51776
Tssr51777 5 90476514 to 90476523 9 - TSS region transcription start site region 51777
Tssr51778 5 90476527 to 90476547 20 - TSS region transcription start site region 51778
Tssr51779 5 90476586 to 90476605 19 - TSS region transcription start site region 51779
Tssr1540 5 90490668 to 90490678 10 + TSS region transcription start site region 1540
Tssr1541 5 90490697 to 90490711 14 + TSS region transcription start site region 1541
Tssr47123 5 90490729 to 90490744 15 + TSS region transcription start site region 47123
Afp 5 90490737 to 90508907 18170 + protein coding gene alpha fetoprotein
Tssr1542 5 90490815 to 90490820 5 + TSS region transcription start site region 1542
D5Nds4 5 90490918 to 90491001 83 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 4
Tssr47124 5 90491688 to 90491719 31 + TSS region transcription start site region 47124
Tssr47125 5 90492637 to 90492683 46 + TSS region transcription start site region 47125
Tssr47126 5 90492688 to 90492718 30 + TSS region transcription start site region 47126
Tssr51780 5 90492721 to 90492739 18 - TSS region transcription start site region 51780
Tssr51781 5 90492756 to 90492765 9 - TSS region transcription start site region 51781
Tssr47127 5 90495959 to 90495965 6 + TSS region transcription start site region 47127
Tssr47128 5 90495974 to 90495986 12 + TSS region transcription start site region 47128
Tssr47129 5 90495990 to 90496029 39 + TSS region transcription start site region 47129
Tssr47130 5 90496041 to 90496123 82 + TSS region transcription start site region 47130
Tssr47131 5 90497186 to 90497206 20 + TSS region transcription start site region 47131
Tssr47132 5 90497209 to 90497245 36 + TSS region transcription start site region 47132
Tssr47133 5 90497248 to 90497267 19 + TSS region transcription start site region 47133
Tssr47134 5 90497276 to 90497297 21 + TSS region transcription start site region 47134
Tssr47135 5 90498256 to 90498315 59 + TSS region transcription start site region 47135
Tssr51782 5 90498295 to 90498312 17 - TSS region transcription start site region 51782
Tssr51783 5 90498327 to 90498367 40 - TSS region transcription start site region 51783
Gm43449 5 90499088 to 90515931 16843 - antisense lncRNA gene predicted gene 43449
Tssr47136 5 90499592 to 90499641 49 + TSS region transcription start site region 47136
Tssr47137 5 90499642 to 90499703 61 + TSS region transcription start site region 47137
Tssr47138 5 90500400 to 90500404 4 + TSS region transcription start site region 47138
Tssr47139 5 90501401 to 90501421 20 + TSS region transcription start site region 47139
Tssr47140 5 90501430 to 90501436 6 + TSS region transcription start site region 47140
Tssr47141 5 90501444 to 90501531 87 + TSS region transcription start site region 47141
Tssr51784 5 90501519 to 90501533 14 - TSS region transcription start site region 51784
Tssr47142 5 90501532 to 90501545 13 + TSS region transcription start site region 47142
Tssr47143 5 90503563 to 90503640 77 + TSS region transcription start site region 47143
Tssr47144 5 90503669 to 90503680 11 + TSS region transcription start site region 47144
Tssr47145 5 90504339 to 90504352 13 + TSS region transcription start site region 47145
Tssr47146 5 90504353 to 90504396 43 + TSS region transcription start site region 47146
Tssr51785 5 90504357 to 90504379 22 - TSS region transcription start site region 51785
Tssr47147 5 90504894 to 90504923 29 + TSS region transcription start site region 47147
Tssr47148 5 90504950 to 90504965 15 + TSS region transcription start site region 47148
Tssr47149 5 90504966 to 90505036 70 + TSS region transcription start site region 47149
Tssr51786 5 90504970 to 90504978 8 - TSS region transcription start site region 51786
Tssr47150 5 90506515 to 90506524 9 + TSS region transcription start site region 47150
Tssr47151 5 90506528 to 90506539 11 + TSS region transcription start site region 47151
Tssr47152 5 90506549 to 90506563 14 + TSS region transcription start site region 47152
Tssr51787 5 90506557 to 90506589 32 - TSS region transcription start site region 51787
Tssr47153 5 90506594 to 90506599 5 + TSS region transcription start site region 47153
Tssr51788 5 90506599 to 90506607 8 - TSS region transcription start site region 51788
Tssr47154 5 90506600 to 90506604 4 + TSS region transcription start site region 47154
Tssr47155 5 90506639 to 90506665 26 + TSS region transcription start site region 47155
Tssr51789 5 90506700 to 90506722 22 - TSS region transcription start site region 51789
Tssr47156 5 90507844 to 90507857 13 + TSS region transcription start site region 47156
Tssr47157 5 90507870 to 90507897 27 + TSS region transcription start site region 47157
Tssr47158 5 90508428 to 90508452 24 + TSS region transcription start site region 47158
Tssr47159 5 90508743 to 90508746 3 + TSS region transcription start site region 47159
Tssr47160 5 90508747 to 90508787 40 + TSS region transcription start site region 47160
Tssr47161 5 90508807 to 90508824 17 + TSS region transcription start site region 47161
Tssr47162 5 90518941 to 90518956 15 + TSS region transcription start site region 47162
Afm 5 90518949 to 90553544 34595 + protein coding gene afamin
Tssr47163 5 90524813 to 90524839 26 + TSS region transcription start site region 47163
Tssr47164 5 90546288 to 90546289 1 + TSS region transcription start site region 47164
Gm2602 5 90558849 to 90559419 570 + pseudogene predicted gene 2602
Tssr47165 5 90561064 to 90561078 14 + TSS region transcription start site region 47165
Tssr47166 5 90561102 to 90561111 9 + TSS region transcription start site region 47166
5830473C10Rik 5 90561107 to 90597871 36764 + protein coding gene RIKEN cDNA 5830473C10 gene
Gm42109 5 90574145 to 90584972 10827 - lncRNA gene predicted gene, 42109
Tssr47167 5 90583251 to 90583255 4 + TSS region transcription start site region 47167
Cpgi16039 5 90588846 to 90589132 286 CpG island CpG island 16039
Rassf6 5 90603076 to 90640657 37581 - protein coding gene Ras association (RalGDS/AF-6) domain family member 6
Tssr51790 5 90639648 to 90639662 14 - TSS region transcription start site region 51790
Tssr51791 5 90639672 to 90639683 11 - TSS region transcription start site region 51791
Cpgi16040 5 90640188 to 90640658 470 CpG island CpG island 16040
Tssr51792 5 90640417 to 90640425 8 - TSS region transcription start site region 51792
Tssr51793 5 90640464 to 90640539 75 - TSS region transcription start site region 51793
Tssr51794 5 90640602 to 90640695 93 - TSS region transcription start site region 51794
Tssr51795 5 90654424 to 90654437 13 - TSS region transcription start site region 51795
Cpgi16041 5 90658340 to 90658521 181 CpG island CpG island 16041
Tssr1543 5 90690120 to 90690122 2 + TSS region transcription start site region 1543
Tssr51796 5 90694565 to 90694569 4 - TSS region transcription start site region 51796
Tssr51797 5 90696091 to 90696094 3 - TSS region transcription start site region 51797
Tssr51798 5 90696102 to 90696116 14 - TSS region transcription start site region 51798