Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:89198871-90458999

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq5 5 84635994 to 89818182 5182188 QTL liver fibrosis QTL 5
Slc4a4 5 88886818 to 89239653 352835 + protein coding gene solute carrier family 4 (anion exchanger), member 4
D5Mit274 5 89198911 to 89199011 100 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 274
Tssr51699 5 89209109 to 89209121 12 - TSS region transcription start site region 51699
Gm35855 5 89221737 to 89223927 2190 - lncRNA gene predicted gene, 35855
Tssr51700 5 89223857 to 89223887 30 - TSS region transcription start site region 51700
Tssr47067 5 89236279 to 89236289 10 + TSS region transcription start site region 47067
Tssr47068 5 89237256 to 89237269 13 + TSS region transcription start site region 47068
D5Mit272 5 89255624 to 89255751 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 272
D5Mit259 5 89271017 to 89271152 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 259
Hbnr10 5 89271017 to 89271152 135 QTL Heligmosomoides bakeri nematode resistance 10
D5Mit398 5 89271038 to 89271147 109 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 398
Tssr51701 5 89416278 to 89416283 5 - TSS region transcription start site region 51701
Tssr51702 5 89416339 to 89416342 3 - TSS region transcription start site region 51702
Gc 5 89417522 to 89457898 40376 - protein coding gene vitamin D binding protein
Tssr51703 5 89419049 to 89419053 4 - TSS region transcription start site region 51703
Tssr51704 5 89434624 to 89434658 34 - TSS region transcription start site region 51704
Tssr51705 5 89435022 to 89435057 35 - TSS region transcription start site region 51705
Tssr51706 5 89435577 to 89435588 11 - TSS region transcription start site region 51706
Tssr51707 5 89435610 to 89435648 38 - TSS region transcription start site region 51707
Tssr51708 5 89438265 to 89438274 9 - TSS region transcription start site region 51708
Tssr51709 5 89438442 to 89438455 13 - TSS region transcription start site region 51709
Tssr51710 5 89439608 to 89439646 38 - TSS region transcription start site region 51710
Tssr47069 5 89441191 to 89441224 33 + TSS region transcription start site region 47069
Tssr51711 5 89441263 to 89441303 40 - TSS region transcription start site region 51711
Tssr51712 5 89441595 to 89441613 18 - TSS region transcription start site region 51712
Tssr51713 5 89441614 to 89441632 18 - TSS region transcription start site region 51713
Tssr51714 5 89441635 to 89441647 12 - TSS region transcription start site region 51714
Tssr51715 5 89441652 to 89441670 18 - TSS region transcription start site region 51715
Tssr51716 5 89441671 to 89441691 20 - TSS region transcription start site region 51716
Tssr51717 5 89441881 to 89441892 11 - TSS region transcription start site region 51717
Tssr47070 5 89443408 to 89443445 37 + TSS region transcription start site region 47070
Tssr51718 5 89443473 to 89443493 20 - TSS region transcription start site region 51718
Tssr51719 5 89443514 to 89443535 21 - TSS region transcription start site region 51719
Tssr51720 5 89443559 to 89443583 24 - TSS region transcription start site region 51720
Tssr51721 5 89445317 to 89445328 11 - TSS region transcription start site region 51721
Tssr51722 5 89445346 to 89445366 20 - TSS region transcription start site region 51722
Tssr51723 5 89445371 to 89445389 18 - TSS region transcription start site region 51723
Tssr51724 5 89445394 to 89445432 38 - TSS region transcription start site region 51724
Tssr51725 5 89457763 to 89457784 21 - TSS region transcription start site region 51725
Gm6366 5 89499152 to 89499977 825 - pseudogene predicted gene 6366
Gm43515 5 89522860 to 89525000 2140 + unclassified gene predicted gene 43515
Cpgi16035 5 89526951 to 89527106 155 CpG island CpG island 16035
Npffr2 5 89527429 to 89583740 56311 + protein coding gene neuropeptide FF receptor 2
Gm7056 5 89616436 to 89622611 6175 + lncRNA gene predicted gene 7056
Tssr51726 5 89676898 to 89676902 4 - TSS region transcription start site region 51726
Adamts3 5 89677087 to 89883334 206247 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
Gm25320 5 89681916 to 89682239 323 + unclassified non-coding RNA gene predicted gene, 25320
Gm42162 5 89689329 to 89690335 1006 - pseudogene predicted gene, 42162
Gm25758 5 89828871 to 89828999 128 + snoRNA gene predicted gene, 25758
Cpgi16036 5 89882218 to 89883935 1717 CpG island CpG island 16036
Tssr51727 5 89883297 to 89883309 12 - TSS region transcription start site region 51727
Tssr51728 5 89883321 to 89883343 22 - TSS region transcription start site region 51728
Tssr51729 5 89883345 to 89883378 33 - TSS region transcription start site region 51729
Tssr51730 5 89883465 to 89883512 47 - TSS region transcription start site region 51730
Eif5al3-ps 5 90132229 to 90132675 446 + pseudogene eukaryotic translation initiation factor 5A-like 3, pseudogene
D5Mit361 5 90155427 to 90155536 109 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 361
Gm35936 5 90193305 to 90200360 7055 + lncRNA gene predicted gene, 35936
Cox18 5 90214724 to 90223996 9272 - protein coding gene cytochrome c oxidase assembly protein 18
Cpgi16037 5 90223453 to 90224310 857 CpG island CpG island 16037
Tssr51731 5 90223923 to 90224020 97 - TSS region transcription start site region 51731
Ankrd17 5 90227166 to 90366572 139406 - protein coding gene ankyrin repeat domain 17
Tssr51732 5 90228979 to 90228998 19 - TSS region transcription start site region 51732
Tssr51733 5 90243779 to 90243825 46 - TSS region transcription start site region 51733
Tssr51734 5 90243850 to 90243861 11 - TSS region transcription start site region 51734
Tssr51735 5 90243979 to 90244051 72 - TSS region transcription start site region 51735
Tssr51736 5 90244354 to 90244366 12 - TSS region transcription start site region 51736
Tssr47071 5 90246799 to 90246823 24 + TSS region transcription start site region 47071
Tssr47072 5 90247269 to 90247274 5 + TSS region transcription start site region 47072
D5Ertd236e 5 90252136 to 90252377 241 DNA segment DNA segment, Chr 5, ERATO Doi 236, expressed
Tssr51737 5 90254770 to 90254812 42 - TSS region transcription start site region 51737
Tssr51738 5 90260154 to 90260183 29 - TSS region transcription start site region 51738
Tssr51739 5 90263336 to 90263369 33 - TSS region transcription start site region 51739
Tssr51740 5 90263381 to 90263395 14 - TSS region transcription start site region 51740
D5Wsu152e 5 90314711 to 90314959 248 DNA segment DNA segment, Chr 5, Wayne State University 152, expressed
AU017193 5 90327599 to 90331506 3907 unclassified gene expressed sequence AU017193
Tssr51741 5 90337688 to 90337693 5 - TSS region transcription start site region 51741
Tssr51742 5 90339724 to 90339802 78 - TSS region transcription start site region 51742
Cpgi16038 5 90365183 to 90367058 1875 CpG island CpG island 16038
Tssr51743 5 90365230 to 90365253 23 - TSS region transcription start site region 51743
Tssr47073 5 90365383 to 90365419 36 + TSS region transcription start site region 47073
Tssr51744 5 90366176 to 90366192 16 - TSS region transcription start site region 51744
Tssr51745 5 90366212 to 90366224 12 - TSS region transcription start site region 51745
Tssr51746 5 90366504 to 90366609 105 - TSS region transcription start site region 51746
Tssr47074 5 90366616 to 90366671 55 + TSS region transcription start site region 47074
Gm9958 5 90367204 to 90368487 1283 + unclassified gene predicted gene 9958
Tssr47075 5 90367571 to 90367589 18 + TSS region transcription start site region 47075
Gm10426 5 90377734 to 90379042 1308 protein coding gene predicted gene 10426
Gm43363 5 90397273 to 90399919 2646 + unclassified gene predicted gene 43363
Gm35999 5 90414392 to 90438690 24298 + lncRNA gene predicted gene, 35999
Tssr51747 5 90450154 to 90450158 4 - TSS region transcription start site region 51747
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Skts4 5 124100176 to 89271017 -34829159 QTL skin tumor susceptibility 4
Prnr1 5 146851125 to 89271017 -57580108 QTL prion resistance 1