Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:81966882-86867839

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16021 5 81969987 to 81970268 281 CpG island CpG island 16021
D5Mit359 5 82021630 to 82021744 114 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 359
1700008H02Rik 5 82119679 to 82121362 1683 - unclassified gene RIKEN cDNA 1700008H02 gene
1700031L13Rik 5 82122789 to 82124711 1922 - lincRNA gene RIKEN cDNA 1700031L13 gene
Tssr51487 5 82123336 to 82123347 11 - TSS region transcription start site region 51487
Tssr51488 5 82123366 to 82123373 7 - TSS region transcription start site region 51488
Tssr51489 5 82124647 to 82124655 8 - TSS region transcription start site region 51489
Tssr51490 5 82124661 to 82124672 11 - TSS region transcription start site region 51490
Tssr51491 5 82124691 to 82124697 6 - TSS region transcription start site region 51491
Tssr51492 5 82124702 to 82124723 21 - TSS region transcription start site region 51492
Tssr51493 5 82124728 to 82124740 12 - TSS region transcription start site region 51493
D5Ertd102e 5 82149879 to 82150108 229 DNA segment DNA segment, Chr 5, ERATO Doi 102, expressed
D5Dcr70 5 82211008 to 82211104 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 70
Rpl7-ps7 5 82336851 to 82337649 798 + pseudogene ribosomal protein L7, pseudogene 7
Tssr1520 5 82701948 to 82701951 3 + TSS region transcription start site region 1520
Mir1187 5 82798944 to 82799065 121 - miRNA gene microRNA 1187
Gm24129 5 82803765 to 82803861 96 + snRNA gene predicted gene, 24129
Gm43217 5 83040638 to 83041004 366 - pseudogene predicted gene 43217
Tecrl 5 83278145 to 83355195 77050 - protein coding gene trans-2,3-enoyl-CoA reductase-like
Gm15626 5 83299585 to 83300452 867 - pseudogene predicted gene 15626
Tssr51494 5 83354888 to 83354911 23 - TSS region transcription start site region 51494
Tssr51495 5 83354924 to 83354944 20 - TSS region transcription start site region 51495
Tssr51496 5 83354946 to 83354973 27 - TSS region transcription start site region 51496
Tssr51497 5 83354979 to 83355060 81 - TSS region transcription start site region 51497
Tssr51498 5 83355072 to 83355092 20 - TSS region transcription start site region 51498
Tssr51499 5 83355093 to 83355113 20 - TSS region transcription start site region 51499
Tssr51500 5 83355120 to 83355127 7 - TSS region transcription start site region 51500
M2fscn2 5 83381814 to 83381814 0 QTL modifier 2 of FSCN2
M1fscn2 5 83381814 to 83381814 0 QTL modifier 1 of Fscn2
D5Mit396 5 83446310 to 83446443 133 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 396
Gm44303 5 83464794 to 83464876 82 + miRNA gene predicted gene, 44303
D5Mit397 5 83520791 to 83521014 223 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 397
Gm25765 5 83648823 to 83648954 131 - snoRNA gene predicted gene, 25765
Gm25806 5 83690004 to 83690125 121 - snRNA gene predicted gene, 25806
Gm24792 5 83723462 to 83723589 127 - snoRNA gene predicted gene, 24792
Gm2337 5 83728594 to 83729157 563 + pseudogene predicted gene 2337
Tssr46822 5 83837189 to 83837195 6 + TSS region transcription start site region 46822
Gm4866 5 83863163 to 83863751 588 + pseudogene predicted gene 4866
Epha5 5 84054761 to 84417382 362621 - protein coding gene Eph receptor A5
Tssr51501 5 84066985 to 84067014 29 - TSS region transcription start site region 51501
Tssr51502 5 84067041 to 84067068 27 - TSS region transcription start site region 51502
Tssr51503 5 84067102 to 84067112 10 - TSS region transcription start site region 51503
Tssr51504 5 84067116 to 84067139 23 - TSS region transcription start site region 51504
Tssr51505 5 84067185 to 84067204 19 - TSS region transcription start site region 51505
Tssr46823 5 84123212 to 84123217 5 + TSS region transcription start site region 46823
Hmgn2-ps1 5 84123313 to 84123591 278 + pseudogene high mobility group nucleosomal binding domain 2, pseudogene 1
Tssr51506 5 84321734 to 84321742 8 - TSS region transcription start site region 51506
Cpgi16022 5 84416096 to 84416782 686 CpG island CpG island 16022
Cpgi16023 5 84416882 to 84417839 957 CpG island CpG island 16023
Tssr51507 5 84417112 to 84417119 7 - TSS region transcription start site region 51507
Tssr51508 5 84417143 to 84417150 7 - TSS region transcription start site region 51508
Tssr51509 5 84417298 to 84417309 11 - TSS region transcription start site region 51509
Tssr51510 5 84417324 to 84417337 13 - TSS region transcription start site region 51510
Tssr51511 5 84417368 to 84417389 21 - TSS region transcription start site region 51511
Tssr51512 5 84417395 to 84417400 5 - TSS region transcription start site region 51512
Tssr51513 5 84417478 to 84417489 11 - TSS region transcription start site region 51513
Gm42163 5 84417527 to 84466952 49425 + lncRNA gene predicted gene, 42163
Gm43532 5 84428805 to 84432620 3815 + lincRNA gene predicted gene 43532
Gm43531 5 84618706 to 84619819 1113 + pseudogene predicted gene 43531
Lfibq5 5 84635994 to 89818182 5182188 QTL liver fibrosis QTL 5
D5Mit414 5 84641880 to 84642009 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 414
Gm20104 5 84807321 to 84808331 1010 - pseudogene predicted gene, 20104
Gm21006 5 84866179 to 84866845 666 - pseudogene predicted gene, 21006
Cpgi16024 5 84895745 to 84896128 383 CpG island CpG island 16024
D5Mit362 5 85009602 to 85009717 115 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 362
D5Mit206 5 85117113 to 85117246 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 206
D5Mit154 5 85224632 to 85224779 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 154
D5Mit153 5 85625392 to 85625588 196 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 153
Gm35251 5 85706144 to 85710817 4673 + lncRNA gene predicted gene, 35251
Gm43567 5 85720774 to 85722751 1977 + lincRNA gene predicted gene 43567
Tssr46824 5 85778283 to 85778287 4 + TSS region transcription start site region 46824
Gm24626 5 85829627 to 85829787 160 + snRNA gene predicted gene, 24626
Gm43564 5 86005407 to 86005617 210 - pseudogene predicted gene 43564
Cenpc1 5 86012024 to 86065583 53559 - protein coding gene centromere protein C1
Tssr51514 5 86020846 to 86020854 8 - TSS region transcription start site region 51514
Tssr51515 5 86037103 to 86037111 8 - TSS region transcription start site region 51515
Cpgi16025 5 86065117 to 86065951 834 CpG island CpG island 16025
Tssr51516 5 86065476 to 86065501 25 - TSS region transcription start site region 51516
Tssr51517 5 86065504 to 86065525 21 - TSS region transcription start site region 51517
Tssr51518 5 86065531 to 86065574 43 - TSS region transcription start site region 51518
Tssr51519 5 86065578 to 86065587 9 - TSS region transcription start site region 51519
Tssr46825 5 86065786 to 86065812 26 + TSS region transcription start site region 46825
Gm2287 5 86066757 to 86067895 1138 + pseudogene predicted gene 2287
Tssr46826 5 86071545 to 86071562 17 + TSS region transcription start site region 46826
Tssr46827 5 86071567 to 86071586 19 + TSS region transcription start site region 46827
Tssr46828 5 86071616 to 86071628 12 + TSS region transcription start site region 46828
Tssr46829 5 86071734 to 86071756 22 + TSS region transcription start site region 46829
Stap1 5 86071746 to 86106125 34379 + protein coding gene signal transducing adaptor family member 1
Gm24524 5 86079766 to 86079935 169 + snRNA gene predicted gene, 24524
Tssr46830 5 86081171 to 86081212 41 + TSS region transcription start site region 46830
Tssr46831 5 86083276 to 86083282 6 + TSS region transcription start site region 46831
Tssr46832 5 86085815 to 86085824 9 + TSS region transcription start site region 46832
Tssr46833 5 86086188 to 86086219 31 + TSS region transcription start site region 46833
Tssr46834 5 86086265 to 86086281 16 + TSS region transcription start site region 46834
Tssr46835 5 86089365 to 86089368 3 + TSS region transcription start site region 46835
Tssr46836 5 86090952 to 86090966 14 + TSS region transcription start site region 46836
Tssr46837 5 86091316 to 86091356 40 + TSS region transcription start site region 46837
Tssr46838 5 86092210 to 86092216 6 + TSS region transcription start site region 46838
Tssr46839 5 86093229 to 86093240 11 + TSS region transcription start site region 46839
Tssr46840 5 86093241 to 86093258 17 + TSS region transcription start site region 46840
Tssr46841 5 86093263 to 86093279 16 + TSS region transcription start site region 46841
Tssr46842 5 86104099 to 86104110 11 + TSS region transcription start site region 46842
Tssr46843 5 86110243 to 86110249 6 + TSS region transcription start site region 46843
Uba6 5 86110720 to 86172743 62023 - protein coding gene ubiquitin-like modifier activating enzyme 6
Tssr51520 5 86159303 to 86159316 13 - TSS region transcription start site region 51520
Cpgi16026 5 86172162 to 86173195 1033 CpG island CpG island 16026
Tssr51521 5 86172747 to 86172793 46 - TSS region transcription start site region 51521
Tssr46844 5 86173038 to 86173052 14 + TSS region transcription start site region 46844
Gnrhr 5 86180754 to 86197901 17147 - protein coding gene gonadotropin releasing hormone receptor
Tssr51522 5 86197847 to 86197856 9 - TSS region transcription start site region 51522
Tssr51523 5 86197881 to 86197895 14 - TSS region transcription start site region 51523
Tssr51524 5 86197925 to 86197935 10 - TSS region transcription start site region 51524
Tmprss11c 5 86231481 to 86289308 57827 - protein coding gene transmembrane protease, serine 11c
Gm25473 5 86236855 to 86236961 106 - snRNA gene predicted gene, 25473
Tmprss11d 5 86302854 to 86373387 70533 - protein coding gene transmembrane protease, serine 11d
Tssr51525 5 86327743 to 86327757 14 - TSS region transcription start site region 51525
Gm35367 5 86344043 to 86396805 52762 + lncRNA gene predicted gene, 35367
Tssr51526 5 86373401 to 86373407 6 - TSS region transcription start site region 51526
Tssr51527 5 86373413 to 86373428 15 - TSS region transcription start site region 51527
Tssr51528 5 86373438 to 86373450 12 - TSS region transcription start site region 51528
Tssr51529 5 86373537 to 86373567 30 - TSS region transcription start site region 51529
Tmprss11a 5 86410410 to 86468990 58580 - protein coding gene transmembrane protease, serine 11a
Tssr51530 5 86469055 to 86469062 7 - TSS region transcription start site region 51530
Tssr51531 5 86469072 to 86469123 51 - TSS region transcription start site region 51531
Tssr51532 5 86469134 to 86469141 7 - TSS region transcription start site region 51532
Tmprss11g 5 86485877 to 86518600 32723 - protein coding gene transmembrane protease, serine 11g
Tssr46845 5 86496131 to 86496135 4 + TSS region transcription start site region 46845
Tssr51533 5 86518549 to 86518561 12 - TSS region transcription start site region 51533
Tssr51534 5 86518562 to 86518577 15 - TSS region transcription start site region 51534
Tssr51535 5 86518578 to 86518610 32 - TSS region transcription start site region 51535
Tssr51536 5 86518616 to 86518627 11 - TSS region transcription start site region 51536
Tssr51537 5 86518677 to 86518690 13 - TSS region transcription start site region 51537
Tmprss11f 5 86521898 to 86632424 110526 - protein coding gene transmembrane protease, serine 11f
Tssr51538 5 86591433 to 86591472 39 - TSS region transcription start site region 51538
Tssr51539 5 86632378 to 86632391 13 - TSS region transcription start site region 51539
Tssr51540 5 86632417 to 86632431 14 - TSS region transcription start site region 51540
Tssr51541 5 86632460 to 86632471 11 - TSS region transcription start site region 51541
Tmprss11b 5 86659522 to 86676298 16776 - protein coding gene transmembrane protease, serine 11B
Tssr51542 5 86676310 to 86676320 10 - TSS region transcription start site region 51542
Tssr51543 5 86676328 to 86676335 7 - TSS region transcription start site region 51543
Tssr51544 5 86676346 to 86676369 23 - TSS region transcription start site region 51544
Gm43056 5 86683850 to 86686640 2790 - lincRNA gene predicted gene 43056
Tmprss11e 5 86705186 to 86745807 40621 - protein coding gene transmembrane protease, serine 11e
Gm16579 5 86728899 to 86759736 30837 + antisense lncRNA gene predicted gene 16579
Gm43055 5 86728906 to 86817106 88200 + lincRNA gene predicted gene 43055
Tssr51545 5 86745787 to 86745812 25 - TSS region transcription start site region 51545
Gm43057 5 86767141 to 86783033 15892 - lincRNA gene predicted gene 43057
Tssr51546 5 86783107 to 86783118 11 - TSS region transcription start site region 51546
Tssr51547 5 86783169 to 86783178 9 - TSS region transcription start site region 51547
Tssr51548 5 86783202 to 86783213 11 - TSS region transcription start site region 51548
Tssr51549 5 86795223 to 86795229 6 - TSS region transcription start site region 51549
Cpgi16027 5 86803911 to 86804927 1016 CpG island CpG island 16027
Tssr51550 5 86803993 to 86804006 13 - TSS region transcription start site region 51550
Tssr46846 5 86804192 to 86804208 16 + TSS region transcription start site region 46846
Tssr46847 5 86804214 to 86804276 62 + TSS region transcription start site region 46847
Ythdc1 5 86804221 to 86836659 32438 + protein coding gene YTH domain containing 1
Tssr46848 5 86804281 to 86804297 16 + TSS region transcription start site region 46848
Tssr46849 5 86804304 to 86804319 15 + TSS region transcription start site region 46849
Tssr46850 5 86804339 to 86804344 5 + TSS region transcription start site region 46850
Tssr46851 5 86804360 to 86804367 7 + TSS region transcription start site region 46851
Tssr46852 5 86804382 to 86804393 11 + TSS region transcription start site region 46852
Tssr46853 5 86804508 to 86804517 9 + TSS region transcription start site region 46853
Tssr51551 5 86804784 to 86804813 29 - TSS region transcription start site region 51551
Tssr46854 5 86816761 to 86816765 4 + TSS region transcription start site region 46854
Tssr46855 5 86833267 to 86833276 9 + TSS region transcription start site region 46855
Gm21461 5 86860657 to 86863506 2849 - pseudogene predicted gene, 21461