Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:75640206-78550220

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295 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
Kit 5 75574987 to 75656722 81735 + protein coding gene KIT proto-oncogene receptor tyrosine kinase
Tssr46709 5 75640938 to 75640967 29 + TSS region transcription start site region 46709
Tssr46710 5 75642466 to 75642467 1 + TSS region transcription start site region 46710
Tssr46711 5 75648578 to 75648585 7 + TSS region transcription start site region 46711
Gm32558 5 75675252 to 75688199 12947 + lncRNA gene predicted gene, 32558
Gm43101 5 75727605 to 75735967 8362 + lincRNA gene predicted gene 43101
Cpgi15986 5 75734774 to 75735006 232 CpG island CpG island 15986
Tssr46712 5 75734818 to 75734835 17 + TSS region transcription start site region 46712
Tssr46713 5 75734840 to 75734856 16 + TSS region transcription start site region 46713
Gm43102 5 75737882 to 75740205 2323 + unclassified gene predicted gene 43102
Gm43100 5 75753556 to 75758886 5330 - lincRNA gene predicted gene 43100
Tssr51404 5 75828478 to 75828491 13 - TSS region transcription start site region 51404
Tssr46714 5 75830441 to 75830452 11 + TSS region transcription start site region 46714
Tssr46715 5 75830455 to 75830471 16 + TSS region transcription start site region 46715
Tssr46716 5 75830550 to 75830587 37 + TSS region transcription start site region 46716
Gm19590 5 75833035 to 75835645 2610 - lincRNA gene predicted gene, 19590
Tssr51405 5 75835241 to 75835256 15 - TSS region transcription start site region 51405
Cpgi15987 5 75835568 to 75835819 251 CpG island CpG island 15987
Tssr51406 5 75835617 to 75835626 9 - TSS region transcription start site region 51406
Tssr51407 5 75835641 to 75835652 11 - TSS region transcription start site region 51407
Tssr51408 5 75835676 to 75835697 21 - TSS region transcription start site region 51408
Tssr51409 5 75835816 to 75835825 9 - TSS region transcription start site region 51409
Tssr51410 5 75835833 to 75835842 9 - TSS region transcription start site region 51410
Tssr51411 5 75835877 to 75835887 10 - TSS region transcription start site region 51411
Tssr51412 5 75835933 to 75835940 7 - TSS region transcription start site region 51412
Gm38180 5 75846089 to 75848210 2121 + unclassified gene predicted gene, 38180
Gm28865 5 75849238 to 75852958 3720 - lincRNA gene predicted gene 28865
Gm25374 5 75909827 to 75909927 100 + miRNA gene predicted gene, 25374
Kdr 5 75932827 to 75978458 45631 - protein coding gene kinase insert domain protein receptor
Tssr51413 5 75933663 to 75933667 4 - TSS region transcription start site region 51413
Cpgi15988 5 75933747 to 75934049 302 CpG island CpG island 15988
Tssr51414 5 75940790 to 75940794 4 - TSS region transcription start site region 51414
Tssr51415 5 75967668 to 75967707 39 - TSS region transcription start site region 51415
Gm32727 5 75974502 to 76013212 38710 + lncRNA gene predicted gene, 32727
Cpgi15989 5 75977582 to 75978787 1205 CpG island CpG island 15989
Tssr51416 5 75978447 to 75978463 16 - TSS region transcription start site region 51416
Tssr51417 5 75979215 to 75979221 6 - TSS region transcription start site region 51417
Tssr46717 5 75981222 to 75981245 23 + TSS region transcription start site region 46717
D5Mit307 5 76000267 to 76000386 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 307
Gm24738 5 76006319 to 76006441 122 - rRNA gene predicted gene, 24738
Tssr46718 5 76016385 to 76016393 8 + TSS region transcription start site region 46718
Gm32780 5 76043098 to 76055899 12801 + lincRNA gene predicted gene, 32780
D5Mit202 5 76056430 to 76056578 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 202
Gm6051 5 76060412 to 76060763 351 - pseudogene predicted gene 6051
Cpgi15990 5 76139926 to 76140977 1051 CpG island CpG island 15990
Srd5a3 5 76140273 to 76155503 15230 + protein coding gene steroid 5 alpha-reductase 3
Tssr46719 5 76140298 to 76140317 19 + TSS region transcription start site region 46719
Tssr46720 5 76140711 to 76140725 14 + TSS region transcription start site region 46720
Gm33832 5 76141835 to 76147678 5843 - lncRNA gene predicted gene, 33832
Gm33938 5 76158260 to 76169219 10959 - lncRNA gene predicted gene, 33938
Tssr51418 5 76182490 to 76182498 8 - TSS region transcription start site region 51418
Tssr51419 5 76182507 to 76182523 16 - TSS region transcription start site region 51419
Cpgi15991 5 76183506 to 76184584 1078 CpG island CpG island 15991
Tssr1513 5 76183804 to 76183829 25 - TSS region transcription start site region 1513
Tmem165 5 76183880 to 76209244 25364 + protein coding gene transmembrane protein 165
Tssr46721 5 76183915 to 76183970 55 + TSS region transcription start site region 46721
Apc-ps1 5 76196625 to 76197094 469 + pseudogene adenomatosis polyposis coli, pseudogene 1
Tssr46722 5 76205863 to 76205878 15 + TSS region transcription start site region 46722
Clock 5 76209868 to 76304792 94924 - protein coding gene circadian locomotor output cycles kaput
Tssr51420 5 76231300 to 76231303 3 - TSS region transcription start site region 51420
Ube2n-ps1 5 76232612 to 76233070 458 - pseudogene ubiquitin-conjugating enzyme E2N, pseudogene 1
Gm43658 5 76297600 to 76301775 4175 - unclassified gene predicted gene 43658
Cpgi15992 5 76303546 to 76305383 1837 CpG island CpG island 15992
Tssr51421 5 76304474 to 76304507 33 - TSS region transcription start site region 51421
Tssr51422 5 76304518 to 76304551 33 - TSS region transcription start site region 51422
Tssr51423 5 76304731 to 76304790 59 - TSS region transcription start site region 51423
Gm7467 5 76304882 to 76305532 650 + antisense lncRNA gene predicted gene 7467
Tssr51424 5 76304956 to 76304993 37 - TSS region transcription start site region 51424
Pdcl2 5 76312116 to 76331156 19040 - protein coding gene phosducin-like 2
Tssr51425 5 76331088 to 76331099 11 - TSS region transcription start site region 51425
Tssr51426 5 76331102 to 76331142 40 - TSS region transcription start site region 51426
Tssr51427 5 76331150 to 76331161 11 - TSS region transcription start site region 51427
Tssr46723 5 76331184 to 76331197 13 + TSS region transcription start site region 46723
4930432L08Rik 5 76332539 to 76341890 9351 + unclassified non-coding RNA gene RIKEN cDNA 4930432L08 gene
Nmu 5 76333495 to 76363777 30282 - protein coding gene neuromedin U
Gm34175 5 76342586 to 76347729 5143 + lncRNA gene predicted gene, 34175
Cpgi15993 5 76363538 to 76364053 515 CpG island CpG island 15993
Tssr51428 5 76363787 to 76363791 4 - TSS region transcription start site region 51428
Gm42666 5 76410354 to 76410505 151 + pseudogene predicted gene 42666
Gm42665 5 76450701 to 76451774 1073 - pseudogene predicted gene 42665
D5Mit112 5 76454954 to 76455133 179 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 112
Lmr3b 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3b
Lmr3d 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3d
Lmr3a 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3a
Lmr3c 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3c
Gm7271 5 76484077 to 76516628 32551 + protein coding gene predicted gene 7271
Cpgi15994 5 76529130 to 76529766 636 CpG island CpG island 15994
Tssr46724 5 76529303 to 76529386 83 + TSS region transcription start site region 46724
Exoc1 5 76529311 to 76570294 40983 + protein coding gene exocyst complex component 1
Cpgi15995 5 76588391 to 76589294 903 CpG island CpG island 15995
Tssr46725 5 76588663 to 76588742 79 + TSS region transcription start site region 46725
Cep135 5 76588698 to 76646466 57768 + protein coding gene centrosomal protein 135
Tssr46726 5 76588787 to 76588803 16 + TSS region transcription start site region 46726
Tssr46727 5 76588815 to 76588837 22 + TSS region transcription start site region 46727
A730089K16Rik 5 76655929 to 76658355 2426 - unclassified gene RIKEN cDNA A730089K16 gene
Cpgi15996 5 76657303 to 76658486 1183 CpG island CpG island 15996
Tssr46728 5 76657649 to 76657669 20 + TSS region transcription start site region 46728
Tssr46729 5 76657673 to 76657722 49 + TSS region transcription start site region 46729
Tssr46730 5 76657727 to 76657732 5 + TSS region transcription start site region 46730
Tssr46731 5 76657753 to 76657764 11 + TSS region transcription start site region 46731
C530008M17Rik 5 76657779 to 76873554 215775 + protein coding gene RIKEN cDNA C530008M17 gene
Tssr51429 5 76658310 to 76658336 26 - TSS region transcription start site region 51429
Tssr51430 5 76658337 to 76658361 24 - TSS region transcription start site region 51430
Tssr51431 5 76658363 to 76658392 29 - TSS region transcription start site region 51431
Tssr46732 5 76677234 to 76677270 36 + TSS region transcription start site region 46732
Tssr46733 5 76677274 to 76677279 5 + TSS region transcription start site region 46733
Tssr46734 5 76677295 to 76677305 10 + TSS region transcription start site region 46734
Mdq16 5 76686563 to 76686563 0 QTL mammary ductal QTL 16
Gm7494 5 76742073 to 76742513 440 - pseudogene predicted gene 7494
Gm34369 5 76774789 to 76777408 2619 - lncRNA gene predicted gene, 34369
Tssr46735 5 76809873 to 76809889 16 + TSS region transcription start site region 46735
Tssr46736 5 76809964 to 76810010 46 + TSS region transcription start site region 46736
Tssr46737 5 76810012 to 76810057 45 + TSS region transcription start site region 46737
Tssr46738 5 76822354 to 76822418 64 + TSS region transcription start site region 46738
Tssr46739 5 76822473 to 76822481 8 + TSS region transcription start site region 46739
Tssr46740 5 76822493 to 76822504 11 + TSS region transcription start site region 46740
Tssr46741 5 76822524 to 76822541 17 + TSS region transcription start site region 46741
Tssr46742 5 76822557 to 76822571 14 + TSS region transcription start site region 46742
Tssr46743 5 76840597 to 76840637 40 + TSS region transcription start site region 46743
Tssr46744 5 76855050 to 76855061 11 + TSS region transcription start site region 46744
Tssr46745 5 76855490 to 76855491 1 + TSS region transcription start site region 46745
Cpgi15997 5 76856400 to 76858715 2315 CpG island CpG island 15997
Tssr46746 5 76856650 to 76856666 16 + TSS region transcription start site region 46746
Tssr46747 5 76856753 to 76856770 17 + TSS region transcription start site region 46747
Tssr51432 5 76858566 to 76858582 16 - TSS region transcription start site region 51432
Tssr46748 5 76858724 to 76858738 14 + TSS region transcription start site region 46748
Tssr46749 5 76858740 to 76858752 12 + TSS region transcription start site region 46749
Aasdh 5 76873659 to 76905514 31855 - protein coding gene aminoadipate-semialdehyde dehydrogenase
Cpgi15998 5 76876121 to 76876579 458 CpG island CpG island 15998
D5Mit306 5 76882159 to 76882252 93 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 306
Cpgi15999 5 76905103 to 76905977 874 CpG island CpG island 15999
Tssr51433 5 76905379 to 76905393 14 - TSS region transcription start site region 51433
Tssr51434 5 76905441 to 76905459 18 - TSS region transcription start site region 51434
Tssr51435 5 76905463 to 76905507 44 - TSS region transcription start site region 51435
Ppat 5 76913249 to 76951578 38329 - protein coding gene phosphoribosyl pyrophosphate amidotransferase
Tssr46750 5 76928344 to 76928376 32 + TSS region transcription start site region 46750
2310040G07Rik 5 76928368 to 76947758 19390 + antisense lncRNA gene RIKEN cDNA 2310040G07 gene
Gm42102 5 76931520 to 76938146 6626 + protein coding gene predicted gene, 42102
Cpgi16000 5 76950790 to 76952015 1225 CpG island CpG island 16000
Tssr51436 5 76951160 to 76951174 14 - TSS region transcription start site region 51436
Tssr51437 5 76951178 to 76951198 20 - TSS region transcription start site region 51437
Tssr51438 5 76951207 to 76951232 25 - TSS region transcription start site region 51438
Paics 5 76951308 to 76967507 16199 + protein coding gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
Tssr46751 5 76951325 to 76951363 38 + TSS region transcription start site region 46751
Tssr46752 5 76951383 to 76951394 11 + TSS region transcription start site region 46752
Tssr51439 5 76951560 to 76951589 29 - TSS region transcription start site region 51439
Tssr46753 5 76951627 to 76951638 11 + TSS region transcription start site region 46753
Tssr46754 5 76951716 to 76951795 79 + TSS region transcription start site region 46754
Tssr46755 5 76951799 to 76951811 12 + TSS region transcription start site region 46755
Tssr46756 5 76965939 to 76965942 3 + TSS region transcription start site region 46756
Tssr51440 5 76971483 to 76971487 4 - TSS region transcription start site region 51440
Cpgi16001 5 76974357 to 76975284 927 CpG island CpG island 16001
Tssr51441 5 76974593 to 76974636 43 - TSS region transcription start site region 51441
Tssr46757 5 76974692 to 76974727 35 + TSS region transcription start site region 46757
Srp72 5 76974701 to 76999935 25234 + protein coding gene signal recognition particle 72
Tssr46758 5 76995770 to 76995789 19 + TSS region transcription start site region 46758
Tssr46759 5 76995828 to 76995842 14 + TSS region transcription start site region 46759
Tssr46760 5 76995849 to 76995860 11 + TSS region transcription start site region 46760
Tssr46761 5 76995871 to 76995884 13 + TSS region transcription start site region 46761
Tssr46762 5 76998201 to 76998235 34 + TSS region transcription start site region 46762
Tssr46763 5 77001450 to 77001461 11 + TSS region transcription start site region 46763
Tssr46764 5 77001463 to 77001470 7 + TSS region transcription start site region 46764
Tssr46765 5 77001510 to 77001518 8 + TSS region transcription start site region 46765
Tssr46766 5 77001547 to 77001595 48 + TSS region transcription start site region 46766
Tssr46767 5 77001750 to 77001756 6 + TSS region transcription start site region 46767
Cpgi16002 5 77002729 to 77003063 334 CpG island CpG island 16002
Arl9 5 77004055 to 77010606 6551 + protein coding gene ADP-ribosylation factor-like 9
1700112J05Rik 5 77006449 to 77018863 12414 - lincRNA gene RIKEN cDNA 1700112J05 gene
D5Buc52 5 77007833 to 77007940 107 DNA segment DNA segment, Chr 5, Bucan 52
Cpgi16003 5 77015765 to 77016500 735 CpG island CpG island 16003
Tssr51442 5 77015929 to 77015940 11 - TSS region transcription start site region 51442
Tssr46768 5 77015982 to 77015995 13 + TSS region transcription start site region 46768
Tssr46769 5 77016023 to 77016054 31 + TSS region transcription start site region 46769
Thegl 5 77016023 to 77061529 45506 + protein coding gene theg spermatid protein like
Tssr51443 5 77018840 to 77018853 13 - TSS region transcription start site region 51443
Tssr51444 5 77018857 to 77018867 10 - TSS region transcription start site region 51444
Pwgrq15 5 77027976 to 97510356 20482380 QTL post-weaning growth rate QTL 15
Ogrq2 5 77027976 to 97510356 20482380 QTL overall growth rate QTL 2
Tssr46770 5 77037010 to 77037043 33 + TSS region transcription start site region 46770
Tssr46771 5 77037045 to 77037072 27 + TSS region transcription start site region 46771
Tssr46772 5 77037076 to 77037087 11 + TSS region transcription start site region 46772
Cpgi16004 5 77061349 to 77061611 262 CpG island CpG island 16004
Hopx 5 77086988 to 77115121 28133 - protein coding gene HOP homeobox
Cpgi16005 5 77094655 to 77095669 1014 CpG island CpG island 16005
Tssr51445 5 77095018 to 77095039 21 - TSS region transcription start site region 51445
Tssr51446 5 77095150 to 77095161 11 - TSS region transcription start site region 51446
Tssr51447 5 77095174 to 77095185 11 - TSS region transcription start site region 51447
Tssr51448 5 77095206 to 77095220 14 - TSS region transcription start site region 51448
Tssr51449 5 77095225 to 77095275 50 - TSS region transcription start site region 51449
Tssr1514 5 77095276 to 77095277 1 - TSS region transcription start site region 1514
Tssr51450 5 77095279 to 77095290 11 - TSS region transcription start site region 51450
Tssr46773 5 77097453 to 77097460 7 + TSS region transcription start site region 46773
Listr1 5 77098234 to 77098356 122 QTL listeriosis resistance 1
D5Mit357 5 77098234 to 77098356 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 357
Hopxos 5 77098830 to 77102313 3483 + antisense lncRNA gene HOP homeobox, opposite strand
Tssr46774 5 77098860 to 77098875 15 + TSS region transcription start site region 46774
Cpgi16006 5 77114815 to 77115042 227 CpG island CpG island 16006
Tssr51451 5 77114872 to 77114886 14 - TSS region transcription start site region 51451
Tssr51452 5 77114910 to 77114922 12 - TSS region transcription start site region 51452