Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:75043578-76253585

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chic2 5 75005004 to 75044641 39637 - protein coding gene cysteine-rich hydrophobic domain 2
Cpgi15974 5 75043785 to 75045006 1221 CpG island CpG island 15974
Tssr51397 5 75044413 to 75044424 11 - TSS region transcription start site region 51397
Tssr51398 5 75044463 to 75044500 37 - TSS region transcription start site region 51398
Tssr51399 5 75044562 to 75044662 100 - TSS region transcription start site region 51399
Tssr51400 5 75044673 to 75044695 22 - TSS region transcription start site region 51400
Tssr51401 5 75044697 to 75044708 11 - TSS region transcription start site region 51401
Gm18593 5 75048489 to 75050035 1546 + pseudogene predicted gene, 18593
Cpgi15975 5 75067029 to 75067605 576 CpG island CpG island 15975
Cpgi15976 5 75071115 to 75071338 223 CpG island CpG island 15976
Cpgi15977 5 75075273 to 75076673 1400 CpG island CpG island 15977
Tssr46682 5 75075590 to 75075597 7 + TSS region transcription start site region 46682
Gsx2 5 75075601 to 75077893 2292 + protein coding gene GS homeobox 2
Cpgi15978 5 75076973 to 75077387 414 CpG island CpG island 15978
Cpgi15979 5 75085053 to 75085287 234 CpG island CpG island 15979
Gm2040 5 75108635 to 75108923 288 + pseudogene predicted gene 2040
Tssr46683 5 75110304 to 75110351 47 + TSS region transcription start site region 46683
Gm19583 5 75110321 to 75147107 36786 + lincRNA gene predicted gene, 19583
Tssr51402 5 75119744 to 75119747 3 - TSS region transcription start site region 51402
Olfr1401-ps1 5 75141349 to 75141558 209 - pseudogene olfactory receptor 1401, pseudogene 1
Cpgi15980 5 75148568 to 75148866 298 CpG island CpG island 15980
Cpgi15981 5 75151221 to 75151684 463 CpG island CpG island 15981
Tssr46684 5 75151380 to 75151400 20 + TSS region transcription start site region 46684
Tssr46685 5 75152159 to 75152186 27 + TSS region transcription start site region 46685
Tssr46686 5 75152274 to 75152297 23 + TSS region transcription start site region 46686
Pdgfra 5 75152292 to 75198215 45923 + protein coding gene platelet derived growth factor receptor, alpha polypeptide
Tssr46687 5 75152316 to 75152367 51 + TSS region transcription start site region 46687
Cpgi15982 5 75152801 to 75153962 1161 CpG island CpG island 15982
Gm42802 5 75153055 to 75153653 598 - antisense lncRNA gene predicted gene 42802
Tssr46688 5 75153522 to 75153541 19 + TSS region transcription start site region 46688
Tssr46689 5 75153581 to 75153609 28 + TSS region transcription start site region 46689
D5Mit201 5 75154687 to 75154796 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 201
Dshv2 5 75154687 to 97871944 22717257 QTL dorsal hippocampal volume 2
Ph 5 75154687 to 75169980 15293 heritable phenotypic marker patch deletion region
Gm42803 5 75154885 to 75155335 450 - unclassified gene predicted gene 42803
Tssr46690 5 75155437 to 75155480 43 + TSS region transcription start site region 46690
Cpgi15983 5 75155791 to 75156858 1067 CpG island CpG island 15983
Tssr46691 5 75155871 to 75155886 15 + TSS region transcription start site region 46691
Tssr46692 5 75155892 to 75155919 27 + TSS region transcription start site region 46692
Tssr46693 5 75155947 to 75155956 9 + TSS region transcription start site region 46693
Tssr46694 5 75163794 to 75163805 11 + TSS region transcription start site region 46694
D5Mit235 5 75169841 to 75169980 139 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 235
Ahl7 5 75169841 to 75169980 139 QTL age related hearing loss 7
Mir7025 5 75176831 to 75176904 73 + miRNA gene microRNA 7025
Tssr46695 5 75180088 to 75180108 20 + TSS region transcription start site region 46695
Tssr46696 5 75180110 to 75180126 16 + TSS region transcription start site region 46696
Tssr46697 5 75180134 to 75180138 4 + TSS region transcription start site region 46697
Tssr46698 5 75180182 to 75180193 11 + TSS region transcription start site region 46698
Cpgi15984 5 75195042 to 75195321 279 CpG island CpG island 15984
Tssr46699 5 75203722 to 75203726 4 + TSS region transcription start site region 46699
Gm42799 5 75246443 to 75246770 327 + pseudogene predicted gene 42799
Gm18345 5 75342443 to 75343832 1389 + pseudogene predicted gene, 18345
Gm22084 5 75372041 to 75372145 104 - snRNA gene predicted gene, 22084
Tssr46700 5 75378947 to 75378970 23 + TSS region transcription start site region 46700
Gm42800 5 75387775 to 75399372 11597 - lincRNA gene predicted gene 42800
D5Dcr49 5 75439833 to 75439928 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 49
D5Dcr50 5 75480119 to 75480214 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 50
Gm24502 5 75561046 to 75561150 104 - snRNA gene predicted gene, 24502
Tssr51403 5 75569911 to 75569918 7 - TSS region transcription start site region 51403
Cpgi15985 5 75574450 to 75576068 1618 CpG island CpG island 15985
Tssr46701 5 75574986 to 75575001 15 + TSS region transcription start site region 46701
Kit 5 75574987 to 75656722 81735 + protein coding gene KIT proto-oncogene receptor tyrosine kinase
l5H1 5 75574987 to 98277030 22702043 heritable phenotypic marker lethal, Chr 5, Harwell 1
Tssr46702 5 75576094 to 75576101 7 + TSS region transcription start site region 46702
Tssr46703 5 75590325 to 75590334 9 + TSS region transcription start site region 46703
Tssr46704 5 75600310 to 75600349 39 + TSS region transcription start site region 46704
Tssr46705 5 75601574 to 75601578 4 + TSS region transcription start site region 46705
Tssr46706 5 75609389 to 75609398 9 + TSS region transcription start site region 46706
Tssr46707 5 75627429 to 75627432 3 + TSS region transcription start site region 46707
Tssr46708 5 75632635 to 75632640 5 + TSS region transcription start site region 46708
Tssr46709 5 75640938 to 75640967 29 + TSS region transcription start site region 46709
Tssr46710 5 75642466 to 75642467 1 + TSS region transcription start site region 46710
Tssr46711 5 75648578 to 75648585 7 + TSS region transcription start site region 46711
Gm32558 5 75675252 to 75688199 12947 + lncRNA gene predicted gene, 32558
Gm43101 5 75727605 to 75735967 8362 + lincRNA gene predicted gene 43101
Cpgi15986 5 75734774 to 75735006 232 CpG island CpG island 15986
Tssr46712 5 75734818 to 75734835 17 + TSS region transcription start site region 46712
Tssr46713 5 75734840 to 75734856 16 + TSS region transcription start site region 46713
Gm43102 5 75737882 to 75740205 2323 + unclassified gene predicted gene 43102
Gm43100 5 75753556 to 75758886 5330 - lincRNA gene predicted gene 43100
Tssr51404 5 75828478 to 75828491 13 - TSS region transcription start site region 51404
Tssr46714 5 75830441 to 75830452 11 + TSS region transcription start site region 46714
Tssr46715 5 75830455 to 75830471 16 + TSS region transcription start site region 46715
Tssr46716 5 75830550 to 75830587 37 + TSS region transcription start site region 46716
Gm19590 5 75833035 to 75835645 2610 - lincRNA gene predicted gene, 19590
Tssr51405 5 75835241 to 75835256 15 - TSS region transcription start site region 51405
Cpgi15987 5 75835568 to 75835819 251 CpG island CpG island 15987
Tssr51406 5 75835617 to 75835626 9 - TSS region transcription start site region 51406
Tssr51407 5 75835641 to 75835652 11 - TSS region transcription start site region 51407
Tssr51408 5 75835676 to 75835697 21 - TSS region transcription start site region 51408
Tssr51409 5 75835816 to 75835825 9 - TSS region transcription start site region 51409
Tssr51410 5 75835833 to 75835842 9 - TSS region transcription start site region 51410
Tssr51411 5 75835877 to 75835887 10 - TSS region transcription start site region 51411
Tssr51412 5 75835933 to 75835940 7 - TSS region transcription start site region 51412
Gm38180 5 75846089 to 75848210 2121 + unclassified gene predicted gene, 38180
Gm28865 5 75849238 to 75852958 3720 - lincRNA gene predicted gene 28865
Gm25374 5 75909827 to 75909927 100 + miRNA gene predicted gene, 25374
Kdr 5 75932827 to 75978458 45631 - protein coding gene kinase insert domain protein receptor
Tssr51413 5 75933663 to 75933667 4 - TSS region transcription start site region 51413
Cpgi15988 5 75933747 to 75934049 302 CpG island CpG island 15988
Tssr51414 5 75940790 to 75940794 4 - TSS region transcription start site region 51414
Tssr51415 5 75967668 to 75967707 39 - TSS region transcription start site region 51415
Gm32727 5 75974502 to 76013212 38710 + lncRNA gene predicted gene, 32727
Cpgi15989 5 75977582 to 75978787 1205 CpG island CpG island 15989
Tssr51416 5 75978447 to 75978463 16 - TSS region transcription start site region 51416
Tssr51417 5 75979215 to 75979221 6 - TSS region transcription start site region 51417
Tssr46717 5 75981222 to 75981245 23 + TSS region transcription start site region 46717
D5Mit307 5 76000267 to 76000386 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 307
Gm24738 5 76006319 to 76006441 122 - rRNA gene predicted gene, 24738
Tssr46718 5 76016385 to 76016393 8 + TSS region transcription start site region 46718
Gm32780 5 76043098 to 76055899 12801 + lincRNA gene predicted gene, 32780
D5Mit202 5 76056430 to 76056578 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 202
Gm6051 5 76060412 to 76060763 351 - pseudogene predicted gene 6051
Cpgi15990 5 76139926 to 76140977 1051 CpG island CpG island 15990
Srd5a3 5 76140273 to 76155503 15230 + protein coding gene steroid 5 alpha-reductase 3
Tssr46719 5 76140298 to 76140317 19 + TSS region transcription start site region 46719
Tssr46720 5 76140711 to 76140725 14 + TSS region transcription start site region 46720
Gm33832 5 76141835 to 76147678 5843 - lncRNA gene predicted gene, 33832
Gm33938 5 76158260 to 76169219 10959 - lncRNA gene predicted gene, 33938
Tssr51418 5 76182490 to 76182498 8 - TSS region transcription start site region 51418
Tssr51419 5 76182507 to 76182523 16 - TSS region transcription start site region 51419
Cpgi15991 5 76183506 to 76184584 1078 CpG island CpG island 15991
Tssr1513 5 76183804 to 76183829 25 - TSS region transcription start site region 1513
Tmem165 5 76183880 to 76209244 25364 + protein coding gene transmembrane protein 165
Tssr46721 5 76183915 to 76183970 55 + TSS region transcription start site region 46721
Apc-ps1 5 76196625 to 76197094 469 + pseudogene adenomatosis polyposis coli, pseudogene 1
Tssr46722 5 76205863 to 76205878 15 + TSS region transcription start site region 46722
Clock 5 76209868 to 76304792 94924 - protein coding gene circadian locomotor output cycles kaput
Tssr51420 5 76231300 to 76231303 3 - TSS region transcription start site region 51420
Ube2n-ps1 5 76232612 to 76233070 458 - pseudogene ubiquitin-conjugating enzyme E2N, pseudogene 1
Cia27 5 119880564 to 75154687 -44725877 QTL collagen induced arthritis QTL 27