Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:73774731-78834790

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472 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
Gm34960 5 73797525 to 73804674 7149 - lncRNA gene predicted gene, 34960
Cpgi15965 5 73822272 to 73822603 331 CpG island CpG island 15965
1700019F05Rik 5 73912896 to 73920421 7525 + lincRNA gene RIKEN cDNA 1700019F05 gene
D5B6CS40 5 73914563 to 73914732 169 DNA segment DNA segment, Chr 5, B6CS 40
D5Jcs309 5 73941688 to 73941910 222 DNA segment DNA segment, Chr 5, John C. Schimenti 309
Tssr46660 5 73946379 to 73946389 10 + TSS region transcription start site region 46660
C78283 5 73946381 to 73948376 1995 + lincRNA gene expressed sequence C78283
Tssr46661 5 73946902 to 73946909 7 + TSS region transcription start site region 46661
Tssr46662 5 73972814 to 73972817 3 + TSS region transcription start site region 46662
D5Jcs310 5 73990150 to 73990397 247 DNA segment DNA segment, Chr 5, John C. Schimenti 310
Usp46 5 73998726 to 74068411 69685 - protein coding gene ubiquitin specific peptidase 46
Tssr1509 5 74009028 to 74009042 14 - TSS region transcription start site region 1509
Tssr51374 5 74009169 to 74009189 20 - TSS region transcription start site region 51374
Tssr51375 5 74009425 to 74009465 40 - TSS region transcription start site region 51375
Usp46os1 5 74013381 to 74015335 1954 + antisense lncRNA gene ubiquitin specific peptidase 46, opposite strand 1
Tssr46663 5 74014195 to 74014209 14 + TSS region transcription start site region 46663
Tssr46664 5 74014211 to 74014226 15 + TSS region transcription start site region 46664
Tssr1510 5 74029210 to 74029221 11 - TSS region transcription start site region 1510
Tssr51376 5 74029238 to 74029262 24 - TSS region transcription start site region 51376
Cpgi15966 5 74032215 to 74032709 494 CpG island CpG island 15966
Tssr46665 5 74032264 to 74032273 9 + TSS region transcription start site region 46665
Usp46os2 5 74035742 to 74043285 7543 + lncRNA gene ubiquitin specific peptidase 46, opposite strand 2
Gm43417 5 74048299 to 74053505 5206 - unclassified gene predicted gene 43417
Gm43415 5 74060038 to 74060787 749 + unclassified gene predicted gene 43415
Tssr51377 5 74065662 to 74065675 13 - TSS region transcription start site region 51377
Tssr51378 5 74065736 to 74065758 22 - TSS region transcription start site region 51378
Cpgi15967 5 74067855 to 74068937 1082 CpG island CpG island 15967
Tssr51379 5 74068336 to 74068350 14 - TSS region transcription start site region 51379
Tssr51380 5 74068361 to 74068438 77 - TSS region transcription start site region 51380
Gm43416 5 74092137 to 74093151 1014 - unclassified gene predicted gene 43416
Cpgi15968 5 74092801 to 74093557 756 CpG island CpG island 15968
Tssr46666 5 74093061 to 74093072 11 + TSS region transcription start site region 46666
Tssr46667 5 74093075 to 74093100 25 + TSS region transcription start site region 46667
Dancr 5 74093083 to 74094336 1253 + lncRNA gene differentiation antagonizing non-protein coding RNA
Tssr46668 5 74093112 to 74093129 17 + TSS region transcription start site region 46668
Tssr46669 5 74093132 to 74093139 7 + TSS region transcription start site region 46669
Snora26 5 74093530 to 74093650 120 + snoRNA gene small nucleolar RNA, H/ACA box 26
Cpgi15969 5 74126426 to 74126672 246 CpG island CpG island 15969
Gm32002 5 74160683 to 74165284 4601 + lncRNA gene predicted gene, 32002
A330058E17Rik 5 74172161 to 74176050 3889 - unclassified gene RIKEN cDNA A330058E17 gene
Cpgi15970 5 74194675 to 74195946 1271 CpG island CpG island 15970
Tssr46670 5 74195281 to 74195294 13 + TSS region transcription start site region 46670
Rasl11b 5 74195326 to 74199477 4151 + protein coding gene RAS-like, family 11, member B
D5Buc50 5 74202136 to 74202410 274 DNA segment DNA segment, Chr 5, Bucan 50
Scfd2 5 74204816 to 74531742 326926 - protein coding gene Sec1 family domain containing 2
D5Buc51 5 74236964 to 74237184 220 DNA segment DNA segment, Chr 5, Bucan 51
Gm42599 5 74249148 to 74249616 468 - unclassified gene predicted gene 42599
Tssr51381 5 74262684 to 74262707 23 - TSS region transcription start site region 51381
Tssr51382 5 74262710 to 74262722 12 - TSS region transcription start site region 51382
Gm32064 5 74309332 to 74359666 50334 + lncRNA gene predicted gene, 32064
Gm15981 5 74316578 to 74317034 456 - pseudogene predicted gene 15981
Tssr46671 5 74337702 to 74337709 7 + TSS region transcription start site region 46671
Gm15982 5 74356583 to 74358419 1836 - pseudogene predicted gene 15982
6720475M21Rik 5 74367163 to 74369915 2752 - unclassified gene RIKEN cDNA 6720475M21 gene
Tssr46672 5 74386432 to 74386435 3 + TSS region transcription start site region 46672
Tssr51383 5 74395644 to 74395647 3 - TSS region transcription start site region 51383
Tssr46673 5 74402992 to 74402998 6 + TSS region transcription start site region 46673
Tssr51384 5 74405095 to 74405132 37 - TSS region transcription start site region 51384
Gm43167 5 74429500 to 74431105 1605 - unclassified gene predicted gene 43167
D5Jcs311 5 74435247 to 74435470 223 DNA segment DNA segment, Chr 5, John C. Schimenti 311
D5B6CS103 5 74492140 to 74492306 166 DNA segment DNA segment, Chr 5, B6CS 103
Cpgi15971 5 74530771 to 74531935 1164 CpG island CpG island 15971
Tssr51385 5 74531666 to 74531754 88 - TSS region transcription start site region 51385
Cpgi15972 5 74535309 to 74536151 842 CpG island CpG island 15972
Fip1l1 5 74535449 to 74598800 63351 + protein coding gene FIP1 like 1 (S. cerevisiae)
Tssr46674 5 74535466 to 74535524 58 + TSS region transcription start site region 46674
Tssr46675 5 74535535 to 74535558 23 + TSS region transcription start site region 46675
Tssr46676 5 74535641 to 74535691 50 + TSS region transcription start site region 46676
Tssr46677 5 74572493 to 74572510 17 + TSS region transcription start site region 46677
Gm43747 5 74575947 to 74577276 1329 + unclassified gene predicted gene 43747
Tssr46678 5 74581246 to 74581249 3 + TSS region transcription start site region 46678
Tssr46679 5 74581568 to 74581572 4 + TSS region transcription start site region 46679
Lnx1 5 74592447 to 74702912 110465 - protein coding gene ligand of numb-protein X 1
Tssr46680 5 74614502 to 74614503 1 + TSS region transcription start site region 46680
D5Jcs312 5 74626319 to 74626515 196 DNA segment DNA segment, Chr 5, John C. Schimenti 312
Gm32304 5 74647643 to 74658336 10693 + lncRNA gene predicted gene, 32304
Tssr1511 5 74647680 to 74647731 51 + TSS region transcription start site region 1511
Tssr51386 5 74677814 to 74677873 59 - TSS region transcription start site region 51386
Gm15984 5 74702454 to 74719238 16784 + antisense lncRNA gene predicted gene 15984
Tssr51387 5 74702854 to 74702886 32 - TSS region transcription start site region 51387
Tssr51388 5 74702891 to 74702914 23 - TSS region transcription start site region 51388
Tssr51389 5 74702953 to 74702966 13 - TSS region transcription start site region 51389
Tssr51390 5 74711084 to 74711100 16 - TSS region transcription start site region 51390
Gm15985 5 74731516 to 74734451 2935 - lincRNA gene predicted gene 15985
Gm42575 5 74749882 to 74754438 4556 + lincRNA gene predicted gene 42575
D5Jcs313 5 74800044 to 74800225 181 DNA segment DNA segment, Chr 5, John C. Schimenti 313
D5Mit135 5 74815713 to 74815951 238 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 135
Tssr51391 5 74879734 to 74879735 1 - TSS region transcription start site region 51391
Gm17906 5 74883338 to 74884115 777 + pseudogene predicted gene, 17906
Tssr1512 5 74922081 to 74922087 6 + TSS region transcription start site region 1512
Cpgi15973 5 74943983 to 74944321 338 CpG island CpG island 15973
Gm6116 5 74949194 to 74966368 17174 + lincRNA gene predicted gene 6116
D5Jpk5 5 74959351 to 74959459 108 DNA segment DNA segment, Chr 5, Japan, Kominami 5
Tssr46681 5 74979878 to 74979906 28 + TSS region transcription start site region 46681
Tssr51392 5 74983579 to 74983580 1 - TSS region transcription start site region 51392
Gm42577 5 74985856 to 74989066 3210 - unclassified gene predicted gene 42577
Tssr51393 5 75004344 to 75004354 10 - TSS region transcription start site region 51393
Chic2 5 75005004 to 75044641 39637 - protein coding gene cysteine-rich hydrophobic domain 2
Gm42576 5 75020236 to 75023081 2845 - unclassified gene predicted gene 42576
Tssr51394 5 75025023 to 75025026 3 - TSS region transcription start site region 51394
Tssr51395 5 75043183 to 75043201 18 - TSS region transcription start site region 51395
Tssr51396 5 75043257 to 75043263 6 - TSS region transcription start site region 51396
Cpgi15974 5 75043785 to 75045006 1221 CpG island CpG island 15974
Tssr51397 5 75044413 to 75044424 11 - TSS region transcription start site region 51397
Tssr51398 5 75044463 to 75044500 37 - TSS region transcription start site region 51398
Tssr51399 5 75044562 to 75044662 100 - TSS region transcription start site region 51399
Tssr51400 5 75044673 to 75044695 22 - TSS region transcription start site region 51400
Tssr51401 5 75044697 to 75044708 11 - TSS region transcription start site region 51401
Gm18593 5 75048489 to 75050035 1546 + pseudogene predicted gene, 18593
Cpgi15975 5 75067029 to 75067605 576 CpG island CpG island 15975
Cpgi15976 5 75071115 to 75071338 223 CpG island CpG island 15976
Cpgi15977 5 75075273 to 75076673 1400 CpG island CpG island 15977
Tssr46682 5 75075590 to 75075597 7 + TSS region transcription start site region 46682
Gsx2 5 75075601 to 75077893 2292 + protein coding gene GS homeobox 2
Cpgi15978 5 75076973 to 75077387 414 CpG island CpG island 15978
Cpgi15979 5 75085053 to 75085287 234 CpG island CpG island 15979
Gm2040 5 75108635 to 75108923 288 + pseudogene predicted gene 2040
Tssr46683 5 75110304 to 75110351 47 + TSS region transcription start site region 46683
Gm19583 5 75110321 to 75147107 36786 + lincRNA gene predicted gene, 19583
Tssr51402 5 75119744 to 75119747 3 - TSS region transcription start site region 51402
Olfr1401-ps1 5 75141349 to 75141558 209 - pseudogene olfactory receptor 1401, pseudogene 1
Cpgi15980 5 75148568 to 75148866 298 CpG island CpG island 15980
Cpgi15981 5 75151221 to 75151684 463 CpG island CpG island 15981
Tssr46684 5 75151380 to 75151400 20 + TSS region transcription start site region 46684
Tssr46685 5 75152159 to 75152186 27 + TSS region transcription start site region 46685
Tssr46686 5 75152274 to 75152297 23 + TSS region transcription start site region 46686
Pdgfra 5 75152292 to 75198215 45923 + protein coding gene platelet derived growth factor receptor, alpha polypeptide
Tssr46687 5 75152316 to 75152367 51 + TSS region transcription start site region 46687
Cpgi15982 5 75152801 to 75153962 1161 CpG island CpG island 15982
Gm42802 5 75153055 to 75153653 598 - antisense lncRNA gene predicted gene 42802
Tssr46688 5 75153522 to 75153541 19 + TSS region transcription start site region 46688
Tssr46689 5 75153581 to 75153609 28 + TSS region transcription start site region 46689
Dshv2 5 75154687 to 97871944 22717257 QTL dorsal hippocampal volume 2
D5Mit201 5 75154687 to 75154796 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 201
Ph 5 75154687 to 75169980 15293 heritable phenotypic marker patch deletion region
Gm42803 5 75154885 to 75155335 450 - unclassified gene predicted gene 42803
Tssr46690 5 75155437 to 75155480 43 + TSS region transcription start site region 46690
Cpgi15983 5 75155791 to 75156858 1067 CpG island CpG island 15983
Tssr46691 5 75155871 to 75155886 15 + TSS region transcription start site region 46691
Tssr46692 5 75155892 to 75155919 27 + TSS region transcription start site region 46692
Tssr46693 5 75155947 to 75155956 9 + TSS region transcription start site region 46693
Tssr46694 5 75163794 to 75163805 11 + TSS region transcription start site region 46694
D5Mit235 5 75169841 to 75169980 139 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 235
Ahl7 5 75169841 to 75169980 139 QTL age related hearing loss 7
Mir7025 5 75176831 to 75176904 73 + miRNA gene microRNA 7025
Tssr46695 5 75180088 to 75180108 20 + TSS region transcription start site region 46695
Tssr46696 5 75180110 to 75180126 16 + TSS region transcription start site region 46696
Tssr46697 5 75180134 to 75180138 4 + TSS region transcription start site region 46697
Tssr46698 5 75180182 to 75180193 11 + TSS region transcription start site region 46698
Cpgi15984 5 75195042 to 75195321 279 CpG island CpG island 15984
Tssr46699 5 75203722 to 75203726 4 + TSS region transcription start site region 46699
Gm42799 5 75246443 to 75246770 327 + pseudogene predicted gene 42799
Gm18345 5 75342443 to 75343832 1389 + pseudogene predicted gene, 18345
Gm22084 5 75372041 to 75372145 104 - snRNA gene predicted gene, 22084
Tssr46700 5 75378947 to 75378970 23 + TSS region transcription start site region 46700
Gm42800 5 75387775 to 75399372 11597 - lincRNA gene predicted gene 42800
D5Dcr49 5 75439833 to 75439928 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 49
D5Dcr50 5 75480119 to 75480214 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 50
Gm24502 5 75561046 to 75561150 104 - snRNA gene predicted gene, 24502
Tssr51403 5 75569911 to 75569918 7 - TSS region transcription start site region 51403
Cpgi15985 5 75574450 to 75576068 1618 CpG island CpG island 15985
Tssr46701 5 75574986 to 75575001 15 + TSS region transcription start site region 46701
Kit 5 75574987 to 75656722 81735 + protein coding gene KIT proto-oncogene receptor tyrosine kinase
l5H1 5 75574987 to 98277030 22702043 heritable phenotypic marker lethal, Chr 5, Harwell 1
Tssr46702 5 75576094 to 75576101 7 + TSS region transcription start site region 46702
Tssr46703 5 75590325 to 75590334 9 + TSS region transcription start site region 46703
Tssr46704 5 75600310 to 75600349 39 + TSS region transcription start site region 46704
Tssr46705 5 75601574 to 75601578 4 + TSS region transcription start site region 46705
Tssr46706 5 75609389 to 75609398 9 + TSS region transcription start site region 46706
Tssr46707 5 75627429 to 75627432 3 + TSS region transcription start site region 46707
Tssr46708 5 75632635 to 75632640 5 + TSS region transcription start site region 46708
Tssr46709 5 75640938 to 75640967 29 + TSS region transcription start site region 46709
Tssr46710 5 75642466 to 75642467 1 + TSS region transcription start site region 46710
Tssr46711 5 75648578 to 75648585 7 + TSS region transcription start site region 46711
Gm32558 5 75675252 to 75688199 12947 + lncRNA gene predicted gene, 32558
Gm43101 5 75727605 to 75735967 8362 + lincRNA gene predicted gene 43101
Cpgi15986 5 75734774 to 75735006 232 CpG island CpG island 15986
Tssr46712 5 75734818 to 75734835 17 + TSS region transcription start site region 46712
Tssr46713 5 75734840 to 75734856 16 + TSS region transcription start site region 46713
Gm43102 5 75737882 to 75740205 2323 + unclassified gene predicted gene 43102
Gm43100 5 75753556 to 75758886 5330 - lincRNA gene predicted gene 43100
Tssr51404 5 75828478 to 75828491 13 - TSS region transcription start site region 51404
Tssr46714 5 75830441 to 75830452 11 + TSS region transcription start site region 46714
Tssr46715 5 75830455 to 75830471 16 + TSS region transcription start site region 46715
Tssr46716 5 75830550 to 75830587 37 + TSS region transcription start site region 46716
Gm19590 5 75833035 to 75835645 2610 - lincRNA gene predicted gene, 19590
Tssr51405 5 75835241 to 75835256 15 - TSS region transcription start site region 51405
Cpgi15987 5 75835568 to 75835819 251 CpG island CpG island 15987
Tssr51406 5 75835617 to 75835626 9 - TSS region transcription start site region 51406
Tssr51407 5 75835641 to 75835652 11 - TSS region transcription start site region 51407
Tssr51408 5 75835676 to 75835697 21 - TSS region transcription start site region 51408
Tssr51409 5 75835816 to 75835825 9 - TSS region transcription start site region 51409
Tssr51410 5 75835833 to 75835842 9 - TSS region transcription start site region 51410
Tssr51411 5 75835877 to 75835887 10 - TSS region transcription start site region 51411
Tssr51412 5 75835933 to 75835940 7 - TSS region transcription start site region 51412
Gm38180 5 75846089 to 75848210 2121 + unclassified gene predicted gene, 38180
Gm28865 5 75849238 to 75852958 3720 - lincRNA gene predicted gene 28865
Gm25374 5 75909827 to 75909927 100 + miRNA gene predicted gene, 25374
Kdr 5 75932827 to 75978458 45631 - protein coding gene kinase insert domain protein receptor