Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:72556062-72896371

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfxl1 5 72513301 to 72559684 46383 - protein coding gene nuclear transcription factor, X-box binding-like 1
Tssr51312 5 72556283 to 72556316 33 - TSS region transcription start site region 51312
Cpgi15945 5 72558938 to 72560000 1062 CpG island CpG island 15945
Tssr51313 5 72559614 to 72559691 77 - TSS region transcription start site region 51313
D5Mit152 5 72560395 to 72560492 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 152
Gm34144 5 72572174 to 72572432 258 + pseudogene predicted gene, 34144
Zar1 5 72577113 to 72581362 4249 - protein coding gene zygote arrest 1
Cpgi15946 5 72580243 to 72581289 1046 CpG island CpG island 15946
Gm5868 5 72581639 to 72587550 5911 - protein coding gene predicted gene 5868
Cpgi15947 5 72586830 to 72587603 773 CpG island CpG island 15947
Tssr51314 5 72587544 to 72587555 11 - TSS region transcription start site region 51314
Tssr46614 5 72602805 to 72602810 5 + TSS region transcription start site region 46614
Cnga1 5 72603696 to 72642752 39056 - protein coding gene cyclic nucleotide gated channel alpha 1
Tssr51315 5 72616775 to 72616784 9 - TSS region transcription start site region 51315
Tssr51316 5 72617382 to 72617391 9 - TSS region transcription start site region 51316
Gm5297 5 72626858 to 72628028 1170 - pseudogene predicted gene 5297
Tssr51317 5 72627937 to 72627942 5 - TSS region transcription start site region 51317
Tssr46615 5 72635004 to 72635038 34 + TSS region transcription start site region 46615
Tssr51318 5 72636206 to 72636218 12 - TSS region transcription start site region 51318
Tssr51319 5 72636227 to 72636236 9 - TSS region transcription start site region 51319
Tssr51320 5 72642725 to 72642749 24 - TSS region transcription start site region 51320
Tssr51321 5 72642758 to 72642766 8 - TSS region transcription start site region 51321
Tssr46616 5 72644409 to 72644418 9 + TSS region transcription start site region 46616
4933408A14Rik 5 72644410 to 72646552 2142 + lincRNA gene RIKEN cDNA 4933408A14 gene
Cpgi15948 5 72647330 to 72648388 1058 CpG island CpG island 15948
Tssr51322 5 72647667 to 72647683 16 - TSS region transcription start site region 51322
Tssr46617 5 72647779 to 72647801 22 + TSS region transcription start site region 46617
Nipal1 5 72647796 to 72671078 23282 + protein coding gene NIPA-like domain containing 1
Tssr46618 5 72647810 to 72647853 43 + TSS region transcription start site region 46618
D5Buc48 5 72651840 to 72652095 255 DNA segment DNA segment, Chr 5, Bucan 48
Tssr51323 5 72675285 to 72675286 1 - TSS region transcription start site region 51323
Txk 5 72695978 to 72752777 56799 - protein coding gene TXK tyrosine kinase
Gm43717 5 72726062 to 72726371 309 + pseudogene predicted gene 43717
Tssr51324 5 72736540 to 72736575 35 - TSS region transcription start site region 51324
Tssr51325 5 72736598 to 72736610 12 - TSS region transcription start site region 51325
D5Nds2 5 72750852 to 72751015 163 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 2
Tssr51326 5 72752732 to 72752762 30 - TSS region transcription start site region 51326
Tssr51327 5 72752763 to 72752784 21 - TSS region transcription start site region 51327
Tssr51328 5 72752788 to 72752797 9 - TSS region transcription start site region 51328
Tec 5 72755716 to 72868483 112767 - protein coding gene tec protein tyrosine kinase
Tssr51329 5 72763712 to 72763734 22 - TSS region transcription start site region 51329
Tssr51330 5 72763743 to 72763779 36 - TSS region transcription start site region 51330
Tssr51331 5 72763790 to 72763803 13 - TSS region transcription start site region 51331
Tssr51332 5 72774943 to 72774954 11 - TSS region transcription start site region 51332
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
D5Mit134 5 72775341 to 72775450 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 134
Tssr46619 5 72803097 to 72803100 3 + TSS region transcription start site region 46619
Gm43499 5 72809968 to 72812074 2106 - unclassified gene predicted gene 43499
Tssr51333 5 72813023 to 72813070 47 - TSS region transcription start site region 51333
Tssr51334 5 72813954 to 72813966 12 - TSS region transcription start site region 51334
Tssr51335 5 72840497 to 72840502 5 - TSS region transcription start site region 51335
Tssr51336 5 72846430 to 72846469 39 - TSS region transcription start site region 51336
Tssr51337 5 72852775 to 72852782 7 - TSS region transcription start site region 51337
Cpgi15949 5 72868023 to 72868820 797 CpG island CpG island 15949
Tssr51338 5 72868431 to 72868451 20 - TSS region transcription start site region 51338
Tssr51339 5 72868471 to 72868474 3 - TSS region transcription start site region 51339
Tssr46620 5 72875879 to 72875884 5 + TSS region transcription start site region 46620