Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:69885417-72165633

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit83 5 69890511 to 69890660 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 83
Tssr46599 5 69919093 to 69919099 6 + TSS region transcription start site region 46599
Gm23661 5 69919095 to 69919181 86 + snRNA gene predicted gene, 23661
Gm43139 5 69931525 to 69931808 283 - pseudogene predicted gene 43139
Tssr46600 5 70086573 to 70086576 3 + TSS region transcription start site region 46600
D5Mit304 5 70149513 to 70149635 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 304
Tssr1505 5 70176569 to 70176570 1 + TSS region transcription start site region 1505
Gm23067 5 70186785 to 70186846 61 - snRNA gene predicted gene, 23067
D5Dcr69 5 70374534 to 70374629 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 69
Gm26072 5 70550841 to 70550947 106 - snRNA gene predicted gene, 26072
Gm42652 5 70553608 to 70554221 613 - pseudogene predicted gene 42652
Gm42653 5 70561265 to 70564103 2838 + unclassified gene predicted gene 42653
D5Buc6 5 70651551 to 70651764 213 DNA segment DNA segment, Chr 5, Bucan 6
D5Buc7 5 70719575 to 70719781 206 DNA segment DNA segment, Chr 5, Bucan 7
D5Buc8 5 70741664 to 70741857 193 DNA segment DNA segment, Chr 5, Bucan 8
Gabrg1 5 70751047 to 70842617 91570 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
D5Buc9 5 70758873 to 70759076 203 DNA segment DNA segment, Chr 5, Bucan 9
Tssr51274 5 70842292 to 70842338 46 - TSS region transcription start site region 51274
Tssr51275 5 70842347 to 70842370 23 - TSS region transcription start site region 51275
Tssr51276 5 70842373 to 70842388 15 - TSS region transcription start site region 51276
D5Buc10 5 70855054 to 70855207 153 DNA segment DNA segment, Chr 5, Bucan 10
D5Buc12 5 70866416 to 70866593 177 DNA segment DNA segment, Chr 5, Bucan 12
D5Buc11 5 70876045 to 70876201 156 DNA segment DNA segment, Chr 5, Bucan 11
D5Buc13 5 70895506 to 70895688 182 DNA segment DNA segment, Chr 5, Bucan 13
D5Buc14 5 70923019 to 70923170 151 DNA segment DNA segment, Chr 5, Bucan 14
Gabra2 5 70959997 to 71095849 135852 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2
Tssr51277 5 70960464 to 70960466 2 - TSS region transcription start site region 51277
Tssr51278 5 70960502 to 70960546 44 - TSS region transcription start site region 51278
D5Buc15 5 70982114 to 70982328 214 DNA segment DNA segment, Chr 5, Bucan 15
D5Buc16 5 71025404 to 71025552 148 DNA segment DNA segment, Chr 5, Bucan 16
D5Buc17 5 71025417 to 71025633 216 DNA segment DNA segment, Chr 5, Bucan 17
D5Buc18 5 71038993 to 71039216 223 DNA segment DNA segment, Chr 5, Bucan 18
D5Buc19 5 71072845 to 71073067 222 DNA segment DNA segment, Chr 5, Bucan 19
Cpgi15938 5 71095138 to 71096514 1376 CpG island CpG island 15938
Tssr51279 5 71095740 to 71095758 18 - TSS region transcription start site region 51279
Tssr51280 5 71095765 to 71095862 97 - TSS region transcription start site region 51280
Tssr51281 5 71095927 to 71095965 38 - TSS region transcription start site region 51281
Cox7b2 5 71442824 to 71548205 105381 - protein coding gene cytochrome c oxidase subunit 7B2
D5Buc47 5 71445714 to 71445916 202 DNA segment DNA segment, Chr 5, Bucan 47
Tssr51282 5 71502656 to 71502659 3 - TSS region transcription start site region 51282
Tssr51283 5 71548190 to 71548260 70 - TSS region transcription start site region 51283
Gabra4 5 71569749 to 71658308 88559 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
D5Buc33 5 71641126 to 71642304 1178 DNA segment DNA segment, Chr 5, Bucan 33
Cpgi15939 5 71657460 to 71658452 992 CpG island CpG island 15939
Tssr51284 5 71657886 to 71657899 13 - TSS region transcription start site region 51284
Tssr51285 5 71657913 to 71657953 40 - TSS region transcription start site region 51285
Tssr1506 5 71657919 to 71657921 2 + TSS region transcription start site region 1506
Tssr51286 5 71657958 to 71657989 31 - TSS region transcription start site region 51286
Tssr46601 5 71658040 to 71658058 18 + TSS region transcription start site region 46601
Tssr46602 5 71658061 to 71658088 27 + TSS region transcription start site region 46602
Tssr51287 5 71658091 to 71658115 24 - TSS region transcription start site region 51287
Gabrb1 5 71658113 to 72149037 490924 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
Gm38562 5 71680268 to 71699824 19556 - antisense lncRNA gene predicted gene, 38562
Tssr46603 5 71699894 to 71699903 9 + TSS region transcription start site region 46603
Tssr46604 5 71699918 to 71699949 31 + TSS region transcription start site region 46604
Tssr46605 5 71699956 to 71699973 17 + TSS region transcription start site region 46605
Tssr46606 5 71699977 to 71699997 20 + TSS region transcription start site region 46606
Cpgi15940 5 71700356 to 71701256 900 CpG island CpG island 15940
Tssr46607 5 71729192 to 71729195 3 + TSS region transcription start site region 46607
C230036F13Rik 5 71748247 to 71751717 3470 unclassified gene RIKEN cDNA C230036F13 gene
D5Buc46 5 71804342 to 71804599 257 DNA segment DNA segment, Chr 5, Bucan 46
D5Mit355 5 71895202 to 71895305 103 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 355
D5Buc38 5 71937438 to 71937738 300 DNA segment DNA segment, Chr 5, Bucan 38
D5Buc37 5 71937624 to 71937798 174 DNA segment DNA segment, Chr 5, Bucan 37
D5Buc35 5 71962875 to 71963070 195 DNA segment DNA segment, Chr 5, Bucan 35
Gm15617 5 72032718 to 72033488 770 - pseudogene predicted gene 15617
Tssr46608 5 72047127 to 72047139 12 + TSS region transcription start site region 46608
Gm15616 5 72047205 to 72047579 374 + pseudogene predicted gene 15616
D5Buc28 5 72082374 to 72082629 255 DNA segment DNA segment, Chr 5, Bucan 28
D5Buc34 5 72097304 to 72097551 247 DNA segment DNA segment, Chr 5, Bucan 34
D5Buc32 5 72126624 to 72126809 185 DNA segment DNA segment, Chr 5, Bucan 32
Cpgi15941 5 72136459 to 72136830 371 CpG island CpG island 15941
D5Buc29 5 72141444 to 72141718 274 DNA segment DNA segment, Chr 5, Bucan 29
D5Buc30e 5 72141807 to 72141970 163 DNA segment DNA segment, Chr 5, Bucan 30 expressed
C030009O12Rik 5 72146379 to 72149034 2655 unclassified gene RIKEN cDNA C030009O12 gene
D5Buc27 5 72150386 to 72151000 614 DNA segment DNA segment, Chr 5, Bucan 27
Commd8 5 72156576 to 72168183 11607 - protein coding gene COMM domain containing 8
Tssr51288 5 72159786 to 72159801 15 - TSS region transcription start site region 51288
Tssr51289 5 72163061 to 72163076 15 - TSS region transcription start site region 51289
Tssr51290 5 72165134 to 72165138 4 - TSS region transcription start site region 51290