Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:65883519-66213523

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rhoh 5 65861403 to 65896700 35297 + protein coding gene ras homolog family member H
Tssr46506 5 65885733 to 65885737 4 + TSS region transcription start site region 46506
Tssr51144 5 65910520 to 65910544 24 - TSS region transcription start site region 51144
Tssr46507 5 65910660 to 65910677 17 + TSS region transcription start site region 46507
Gm32474 5 65911127 to 65913845 2718 - lncRNA gene predicted gene, 32474
Gm43769 5 65911624 to 65915946 4322 + unclassified gene predicted gene 43769
Tssr51145 5 65911853 to 65911862 9 - TSS region transcription start site region 51145
Tssr51146 5 65912324 to 65912349 25 - TSS region transcription start site region 51146
Tssr51147 5 65912368 to 65912392 24 - TSS region transcription start site region 51147
Gm32556 5 65914033 to 65919746 5713 - lncRNA gene predicted gene, 32556
Tssr51148 5 65918199 to 65918204 5 - TSS region transcription start site region 51148
Tssr51149 5 65926823 to 65926826 3 - TSS region transcription start site region 51149
Tssr51150 5 65929245 to 65929258 13 - TSS region transcription start site region 51150
Tssr1496 5 65934712 to 65934717 5 + TSS region transcription start site region 1496
Tssr46508 5 65934894 to 65934902 8 + TSS region transcription start site region 46508
Tssr46509 5 65934910 to 65934921 11 + TSS region transcription start site region 46509
Chrna9 5 65934921 to 65977326 42405 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 9
Tssr46510 5 65934922 to 65935006 84 + TSS region transcription start site region 46510
Tssr51151 5 65935657 to 65935660 3 - TSS region transcription start site region 51151
4930480C01Rik 5 65951305 to 65952205 900 + lncRNA gene RIKEN cDNA 4930480C01 gene
Tssr46511 5 65955637 to 65955646 9 + TSS region transcription start site region 46511
Tssr46512 5 65955653 to 65955664 11 + TSS region transcription start site region 46512
Tssr46513 5 65955673 to 65955680 7 + TSS region transcription start site region 46513
Tssr46514 5 65955697 to 65955704 7 + TSS region transcription start site region 46514
Gm43771 5 65963851 to 65965428 1577 + unclassified gene predicted gene 43771
Tssr46515 5 65966948 to 65966952 4 + TSS region transcription start site region 46515
Tssr46516 5 65967346 to 65967381 35 + TSS region transcription start site region 46516
Tssr46517 5 65967384 to 65967401 17 + TSS region transcription start site region 46517
Tssr51152 5 65975648 to 65975688 40 - TSS region transcription start site region 51152
Tssr46518 5 65975850 to 65975866 16 + TSS region transcription start site region 46518
Tssr46519 5 65975882 to 65975893 11 + TSS region transcription start site region 46519
Tssr46520 5 65975978 to 65975989 11 + TSS region transcription start site region 46520
9130230L23Rik 5 65987928 to 66004285 16357 - protein coding gene RIKEN cDNA 9130230L23 gene
Gm25952 5 65989045 to 65989118 73 + miRNA gene predicted gene, 25952
Tssr51153 5 65990157 to 65990182 25 - TSS region transcription start site region 51153
Tssr51154 5 65991234 to 65991246 12 - TSS region transcription start site region 51154
Tssr46521 5 65991491 to 65991511 20 + TSS region transcription start site region 46521
Tssr51155 5 66001327 to 66001347 20 - TSS region transcription start site region 51155
Tssr51156 5 66001356 to 66001390 34 - TSS region transcription start site region 51156
Tssr51157 5 66003601 to 66003605 4 - TSS region transcription start site region 51157
Tssr51158 5 66004278 to 66004291 13 - TSS region transcription start site region 51158
Gm40310 5 66008325 to 66010377 2052 - lncRNA gene predicted gene, 40310
Rbm47 5 66016549 to 66151954 135405 - protein coding gene RNA binding motif protein 47
Tssr51159 5 66017618 to 66017622 4 - TSS region transcription start site region 51159
Tssr51160 5 66018560 to 66018575 15 - TSS region transcription start site region 51160
Tssr51161 5 66019005 to 66019009 4 - TSS region transcription start site region 51161
Cpgi15903 5 66019170 to 66019462 292 CpG island CpG island 15903
Tssr51162 5 66019266 to 66019293 27 - TSS region transcription start site region 51162
Tssr51163 5 66019422 to 66019434 12 - TSS region transcription start site region 51163
Tssr51164 5 66022701 to 66022723 22 - TSS region transcription start site region 51164
Tssr51165 5 66025063 to 66025090 27 - TSS region transcription start site region 51165
D5Ertd700e 5 66025550 to 66025792 242 DNA segment DNA segment, Chr 5, ERATO Doi 700, expressed
Cpgi15904 5 66026115 to 66027270 1155 CpG island CpG island 15904
D5Mit258 5 66042304 to 66042428 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 258
Tssr51166 5 66042641 to 66042645 4 - TSS region transcription start site region 51166
Tssr51167 5 66048519 to 66048523 4 - TSS region transcription start site region 51167
Tssr51168 5 66050357 to 66050369 12 - TSS region transcription start site region 51168
Tssr51169 5 66052753 to 66052775 22 - TSS region transcription start site region 51169
Tssr46522 5 66053125 to 66053136 11 + TSS region transcription start site region 46522
Tssr46523 5 66053138 to 66053149 11 + TSS region transcription start site region 46523
Tssr51170 5 66054499 to 66054561 62 - TSS region transcription start site region 51170
Gm43775 5 66069501 to 66072895 3394 - unclassified gene predicted gene 43775
Cpgi15905 5 66069581 to 66069954 373 CpG island CpG island 15905
Tssr1497 5 66069967 to 66069984 17 - TSS region transcription start site region 1497
D5Dcr46 5 66075450 to 66075547 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 46
Gm43323 5 66080209 to 66084466 4257 - unclassified gene predicted gene 43323
D5Ertd77e 5 66080244 to 66080473 229 DNA segment DNA segment, Chr 5, ERATO Doi 77, expressed
Tssr51171 5 66080971 to 66081009 38 - TSS region transcription start site region 51171
Tssr51172 5 66081803 to 66081816 13 - TSS region transcription start site region 51172
Tssr1498 5 66082304 to 66082311 7 - TSS region transcription start site region 1498
D5Dcr47 5 66083904 to 66084000 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 47
Tssr51173 5 66084696 to 66084700 4 - TSS region transcription start site region 51173
D5Ertd163e 5 66096020 to 66096229 209 DNA segment DNA segment, Chr 5, ERATO Doi 163, expressed
Tssr46524 5 66106214 to 66106232 18 + TSS region transcription start site region 46524
Tssr51174 5 66122647 to 66122658 11 - TSS region transcription start site region 51174
Tssr51175 5 66131968 to 66131999 31 - TSS region transcription start site region 51175
Tssr51176 5 66132132 to 66132157 25 - TSS region transcription start site region 51176
Tssr51177 5 66133711 to 66133745 34 - TSS region transcription start site region 51177
Tssr51178 5 66136078 to 66136091 13 - TSS region transcription start site region 51178
Tssr51179 5 66142456 to 66142463 7 - TSS region transcription start site region 51179
Tssr51180 5 66142943 to 66142965 22 - TSS region transcription start site region 51180
Tssr51181 5 66145745 to 66145746 1 - TSS region transcription start site region 51181
Tssr51182 5 66146803 to 66146814 11 - TSS region transcription start site region 51182
Tssr51183 5 66147562 to 66147584 22 - TSS region transcription start site region 51183
Cpgi15906 5 66150669 to 66151686 1017 CpG island CpG island 15906
Tssr51184 5 66150672 to 66150707 35 - TSS region transcription start site region 51184
Tssr46525 5 66150785 to 66150810 25 + TSS region transcription start site region 46525
Tssr51185 5 66150906 to 66150960 54 - TSS region transcription start site region 51185
Tssr51186 5 66151188 to 66151197 9 - TSS region transcription start site region 51186
Gm26725 5 66151212 to 66174945 23733 + antisense lncRNA gene predicted gene, 26725
Tssr51187 5 66151305 to 66151308 3 - TSS region transcription start site region 51187
Tssr51188 5 66151332 to 66151343 11 - TSS region transcription start site region 51188
Tssr51189 5 66151362 to 66151375 13 - TSS region transcription start site region 51189
Tssr51190 5 66151391 to 66151400 9 - TSS region transcription start site region 51190
Tssr51191 5 66151530 to 66151541 11 - TSS region transcription start site region 51191
Tssr51192 5 66151648 to 66151681 33 - TSS region transcription start site region 51192
Tssr51193 5 66151684 to 66151695 11 - TSS region transcription start site region 51193
Tssr51194 5 66151719 to 66151728 9 - TSS region transcription start site region 51194
Tssr51195 5 66151857 to 66151866 9 - TSS region transcription start site region 51195
Tssr51196 5 66151903 to 66151962 59 - TSS region transcription start site region 51196
Gm22929 5 66164556 to 66164662 106 - snRNA gene predicted gene, 22929
1700126H18Rik 5 66166607 to 66191335 24728 - antisense lncRNA gene RIKEN cDNA 1700126H18 gene
Gm40311 5 66171692 to 66172207 515 - lncRNA gene predicted gene, 40311
Tssr51197 5 66173051 to 66173058 7 - TSS region transcription start site region 51197
Gm43772 5 66174965 to 66175343 378 - pseudogene predicted gene 43772
Tssr46526 5 66195577 to 66195585 8 + TSS region transcription start site region 46526
Tssr46527 5 66195599 to 66195608 9 + TSS region transcription start site region 46527
Gm15794 5 66197878 to 66198911 1033 - pseudogene predicted gene 15794