Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:5616311-7008991

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfap69 5 5579278 to 5664239 84961 - protein coding gene cilia and flagella associated protein 69
n-TUtca1 5 5627681 to 5627751 70 + tRNA gene nuclear encoded tRNA selenocysteine 1 (anticodon TCA)
Tssr1417 5 5644794 to 5644795 1 + TSS region transcription start site region 1417
Tssr50059 5 5663207 to 5663221 14 - TSS region transcription start site region 50059
Tssr50060 5 5663263 to 5663294 31 - TSS region transcription start site region 50060
Cpgi15523 5 5663755 to 5664386 631 CpG island CpG island 15523
Tssr50061 5 5664176 to 5664181 5 - TSS region transcription start site region 50061
Tssr50062 5 5664183 to 5664192 9 - TSS region transcription start site region 50062
Tssr50063 5 5664196 to 5664253 57 - TSS region transcription start site region 50063
Gm40262 5 5664289 to 5716533 52244 + lncRNA gene predicted gene, 40262
Steap2 5 5664829 to 5694568 29739 - protein coding gene six transmembrane epithelial antigen of prostate 2
D5Mit417 5 5692220 to 5692365 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 417
Cpgi15524 5 5693614 to 5694706 1092 CpG island CpG island 15524
Tssr50064 5 5694024 to 5694109 85 - TSS region transcription start site region 50064
Tssr50065 5 5694269 to 5694312 43 - TSS region transcription start site region 50065
Tssr50066 5 5694436 to 5694447 11 - TSS region transcription start site region 50066
Tssr50067 5 5694480 to 5694491 11 - TSS region transcription start site region 50067
Tssr50068 5 5694499 to 5694539 40 - TSS region transcription start site region 50068
Tssr50069 5 5694559 to 5694581 22 - TSS region transcription start site region 50069
Gm43219 5 5696858 to 5698794 1936 + unclassified gene predicted gene 43219
Steap1 5 5736322 to 5749317 12995 - protein coding gene six transmembrane epithelial antigen of the prostate 1
Gm46900 5 5743074 to 5749621 6547 + protein coding gene predicted gene, 46900
Cpgi15525 5 5748778 to 5749881 1103 CpG island CpG island 15525
Tssr50070 5 5749285 to 5749315 30 - TSS region transcription start site region 50070
Tssr50071 5 5749317 to 5749340 23 - TSS region transcription start site region 50071
Tssr45093 5 5754765 to 5754768 3 + TSS region transcription start site region 45093
Gm26825 5 5781530 to 5783636 2106 + lincRNA gene predicted gene, 26825
Gm15459 5 5781615 to 5783555 1940 - pseudogene predicted gene 15459
Tssr50072 5 5783443 to 5783477 34 - TSS region transcription start site region 50072
Tssr50073 5 5783629 to 5783638 9 - TSS region transcription start site region 50073
Gm38697 5 5798197 to 5799942 1745 + pseudogene predicted gene, 38697
Gm5984 5 5806872 to 5810573 3701 + lncRNA gene predicted gene 5984
Tssr45094 5 5890985 to 5890986 1 + TSS region transcription start site region 45094
Gm23838 5 6014863 to 6015024 161 - snRNA gene predicted gene, 23838
Tssr1418 5 6104286 to 6104287 1 - TSS region transcription start site region 1418
Gm42718 5 6311311 to 6313991 2680 - pseudogene predicted gene 42718
Gm42719 5 6358836 to 6359190 354 + pseudogene predicted gene 42719
D5Mit385 5 6409897 to 6409998 101 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 385
Gm24686 5 6410438 to 6410530 92 + snRNA gene predicted gene, 24686
Gm40263 5 6414399 to 6427065 12666 + lincRNA gene predicted gene, 40263
Gm3203 5 6426844 to 6429232 2388 - pseudogene predicted gene 3203
Bwq13 5 6556176 to 6556323 147 QTL body weight QTL 13
D5Mit123 5 6556176 to 6556323 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 123
Gm43324 5 6646520 to 6646808 288 - pseudogene predicted gene 43324
Gm5714 5 6748894 to 6749448 554 - pseudogene predicted gene 5714
Zfp804b 5 6769030 to 7344378 575348 - protein coding gene zinc finger protein 804B
Tssr1419 5 6818536 to 6818540 4 + TSS region transcription start site region 1419
Tssr45095 5 6951726 to 6951734 8 + TSS region transcription start site region 45095